mRNA_S-dermatodea_contig811.16305.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig811.16305.1
Unique NamemRNA_S-dermatodea_contig811.16305.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig811.16305.1 vs. uniprot
Match: A0A6H5KL95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL95_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 8.980e-25
Identity = 48/67 (71.64%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 PQRACDYTTYTPESLGGPGLDGMGLWTDDRKMSPSALYNSLMHVQGVLTAAGRWKEAFPVLAVLEHV 201
            PQR CDY ++TPE+LGGPGL+ +GLW DDR++S S+L  SLMHVQGVL AAG +KEAFPV AVLEHV
Sbjct: 2229 PQRECDYASFTPETLGGPGLESLGLWIDDRRLSVSSLSLSLMHVQGVLVAAGCYKEAFPVQAVLEHV 2295
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BLAST of mRNA_S-dermatodea_contig811.16305.1 vs. uniprot
Match: D7FND2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FND2_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 5.810e-24
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 PQRACDYTTYTPESLGGPGLDGMGLWTDDRKMSPSALYNSLMHVQGVLTAAGRWKEAFPVLAVLEH 198
            PQR CDY ++TPESLGGPGL+ +GLW DDR++S S+L  SLMHVQGVL AAG ++EAFPV AVLEH
Sbjct: 2344 PQRECDYASFTPESLGGPGLESLGLWLDDRRLSVSSLSLSLMHVQGVLMAAGCYEEAFPVQAVLEH 2409
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig811.16305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KL95_9PHAE8.980e-2571.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FND2_ECTSI5.810e-2471.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig811contigS-dermatodea_contig811:187..387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue3.7e-20
Seed eggNOG ortholog2880.D7FND2
Preferred nameC12orf55
KEGG koko:K20478
GOsGO:0000003,GO:0001539,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007276,GO:0007283,GO:0008150,GO:0009987,GO:0016043,GO:0019953,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0032501,GO:0032504,GO:0032838,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0048232,GO:0048609,GO:0048870,GO:0051179,GO:0051674,GO:0051704,GO:0060271,GO:0060285,GO:0060294,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.cilium movement involved in cell motility
EggNOG OGs28NU0@1,2QVDY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_001260.1
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925321.5788698-CDS-S-dermatodea_contig811:186..3871622925321.5788698-CDS-S-dermatodea_contig811:186..387Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig811 187..387 +
1694079853.8862698-CDS-S-dermatodea_contig811:186..3871694079853.8862698-CDS-S-dermatodea_contig811:186..387Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig811 187..387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig811.16305.1prot_S-dermatodea_contig811.16305.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig811 187..387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig811.16305.1

>prot_S-dermatodea_contig811.16305.1 ID=prot_S-dermatodea_contig811.16305.1|Name=mRNA_S-dermatodea_contig811.16305.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=67bp
PQRACDYTTYTPESLGGPGLDGMGLWTDDRKMSPSALYNSLMHVQGVLTA
AGRWKEAFPVLAVLEHV
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mRNA from alignment at S-dermatodea_contig811:187..387+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig811.16305.1 ID=mRNA_S-dermatodea_contig811.16305.1|Name=mRNA_S-dermatodea_contig811.16305.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at S-dermatodea_contig811:187..387+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCAGAGGGCGTGCGATTATACCACCTACACTCCGGAATCCCTTGGGGG
GCCGGGGTTGGACGGGATGGGACTTTGGACGGACGACCGCAAGATGTCTC
CTTCAGCTCTCTACAACTCCCTAATGCATGTTCAGGGAGTCCTGACGGCG
GCGGGGAGGTGGAAGGAGGCTTTTCCGGTTCTGGCGGTATTGGAACATGT
G
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Coding sequence (CDS) from alignment at S-dermatodea_contig811:187..387+

>mRNA_S-dermatodea_contig811.16305.1 ID=mRNA_S-dermatodea_contig811.16305.1|Name=mRNA_S-dermatodea_contig811.16305.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at S-dermatodea_contig811:187..387+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCAGAGGGCGTGCGATTATACCACCTACACTCCGGAATCCCTTGGGGG
GCCGGGGTTGGACGGGATGGGACTTTGGACGGACGACCGCAAGATGTCTC
CTTCAGCTCTCTACAACTCCCTAATGCATGTTCAGGGAGTCCTGACGGCG
GCGGGGAGGTGGAAGGAGGCTTTTCCGGTTCTGGCGGTATTGGAACATGT
GCCCCAGAGGGCGTGCGATTATACCACCTACACTCCGGAATCCCTTGGGG
GGCCGGGGTTGGACGGGATGGGACTTTGGACGGACGACCGCAAGATGTCT
CCTTCAGCTCTCTACAACTCCCTAATGCATGTTCAGGGAGTCCTGACGGC
GGCGGGGAGGTGGAAGGAGGCTTTTCCGGTTCTGGCGGTATTGGAACATG
TG
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