mRNA_S-dermatodea_contig8106.16301.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8106.16301.1
Unique NamemRNA_S-dermatodea_contig8106.16301.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8106.16301.1 vs. uniprot
Match: D8LRP2_ECTSI (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP2_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 5.420e-22
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    1 MGRLMRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAIRYVLLCISRTANASRALDL 192
            MGRL+RIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAI +VL   S+   +++  DL
Sbjct:    1 MGRLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLSDL 64
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BLAST of mRNA_S-dermatodea_contig8106.16301.1 vs. uniprot
Match: K8YUL1_NANGC (Regulator of chromosome condensation-like protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YUL1_NANGC)

HSP 1 Score: 87.0 bits (214), Expect = 5.250e-21
Identity = 42/64 (65.62%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 MGRLMRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAIRYVLLCISRTANASRALDL 192
            MGRL R+  ENFKSY GTQ+IGPF+DFTA+IGPNG+GKSNLMDAI +VL   SR   +S+  +L
Sbjct:    1 MGRLERVTLENFKSYPGTQVIGPFRDFTAIIGPNGSGKSNLMDAISFVLGVQSRQLRSSQMKEL 64
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BLAST of mRNA_S-dermatodea_contig8106.16301.1 vs. uniprot
Match: A0A835ZAW7_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAW7_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 7.920e-20
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:    1 MGRLMRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAIRYVLLCISRTANASRALDL 192
            MGRL+RIE ENFKSYAG+Q IGPF+DFTAVIGPNGAGKSNLMDAI +VL   SR   + +  DL
Sbjct:   12 MGRLVRIELENFKSYAGSQTIGPFRDFTAVIGPNGAGKSNLMDAISFVLGVQSRHLRSQKLEDL 75
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BLAST of mRNA_S-dermatodea_contig8106.16301.1 vs. uniprot
Match: A0A1Y1XR24_9FUNG (SMC_N domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XR24_9FUNG)

HSP 1 Score: 82.4 bits (202), Expect = 2.360e-19
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 MGRLMRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAIRYVLLC 153
            MG+L+R+E ENFKSY G Q+IGPF  FT+VIGPNGAGKSNLMDAI +VL C
Sbjct:    1 MGKLIRLELENFKSYKGRQLIGPFYTFTSVIGPNGAGKSNLMDAISFVLWC 51
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BLAST of mRNA_S-dermatodea_contig8106.16301.1 vs. uniprot
Match: A0A482SNL3_9ARCH (Chromosome segregation protein SMC n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNL3_9ARCH)

HSP 1 Score: 87.8 bits (216), Expect = 9.550e-19
Identity = 42/64 (65.62%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 MGRLMRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAIRYVLLCISRTANASRALDL 192
            MGRL+++E ENFKSYAGTQ+IGPF DFT +IGPNGAGKSNLMDAI +VL   S+   ++   DL
Sbjct:    1 MGRLLQLELENFKSYAGTQVIGPFYDFTCIIGPNGAGKSNLMDAISFVLGLQSKQLRSTNLKDL 64
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BLAST of mRNA_S-dermatodea_contig8106.16301.1 vs. uniprot
Match: A0A4D9CMM9_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMM9_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.780e-18
Identity = 42/64 (65.62%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 MGRLMRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAIRYVLLCISRTANASRALDL 192
            MGRL R+  ENFKSY GTQ+IGPF+DFTA+IGPNG+GKSNLMDAI +VL   SR   +S+  +L
Sbjct:    1 MGRLERVTLENFKSYPGTQVIGPFRDFTAIIGPNGSGKSNLMDAISFVLGVQSRQLRSSQMKEL 64
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BLAST of mRNA_S-dermatodea_contig8106.16301.1 vs. uniprot
Match: A0A183HPE9_9BILA (SMC_N domain-containing protein n=1 Tax=Onchocerca flexuosa TaxID=387005 RepID=A0A183HPE9_9BILA)

HSP 1 Score: 79.0 bits (193), Expect = 6.180e-18
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 MGRLMRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAIRYVL 147
            MGRL  +E ENFKSY G QI+GPFK FTA+IGPNG+GKSNLMDA+ +VL
Sbjct:   10 MGRLHTLELENFKSYRGNQIVGPFKQFTAIIGPNGSGKSNLMDAMCFVL 58
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BLAST of mRNA_S-dermatodea_contig8106.16301.1 vs. uniprot
Match: SMC1_SCHPO (Structural maintenance of chromosomes protein 1 n=1 Tax=Schizosaccharomyces pombe (strain 972 / ATCC 24843) TaxID=284812 RepID=SMC1_SCHPO)

HSP 1 Score: 85.5 bits (210), Expect = 6.200e-18
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 MGRLMRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAIRYVL 147
            MGRL+R+E ENFKSY G QIIGPF+DFT++IGPNGAGKSNLMDAI +VL
Sbjct:    1 MGRLLRLEVENFKSYRGHQIIGPFEDFTSIIGPNGAGKSNLMDAISFVL 49
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BLAST of mRNA_S-dermatodea_contig8106.16301.1 vs. uniprot
Match: A0A7S1YS26_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YS26_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 7.410e-18
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:   19 IEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAIRYVLLCISRTANASRALDL 192
            +E ENFKSYAGTQ IGPF DFT+VIGPNG+GKSNLMDAI +VL   SR   +S+  DL
Sbjct:   23 LELENFKSYAGTQRIGPFHDFTSVIGPNGSGKSNLMDAISFVLGVQSRDLRSSQMKDL 80
[Close]
BLAST of mRNA_S-dermatodea_contig8106.16301.1 vs. uniprot
Match: K3WJ16_GLOUD (Structural maintenance of chromosomes protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJ16_GLOUD)

HSP 1 Score: 85.1 bits (209), Expect = 8.470e-18
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 MGRLMRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAIRYVLLCISRTANASRALDL 192
            MGR+ RIE ENFKSY G  +IGPFK FTAVIGPNG+GKSNLMDAI +VL   SR   +++  DL
Sbjct:    1 MGRIARIEVENFKSYGGAHVIGPFKRFTAVIGPNGSGKSNLMDAISFVLGVNSRQLRSNQLKDL 64
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8106.16301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRP2_ECTSI5.420e-2276.56Structural maintenance of chromosomes protein n=1 ... [more]
K8YUL1_NANGC5.250e-2165.63Regulator of chromosome condensation-like protein ... [more]
A0A835ZAW7_9STRA7.920e-2071.88Structural maintenance of chromosomes protein n=1 ... [more]
A0A1Y1XR24_9FUNG2.360e-1974.51SMC_N domain-containing protein n=1 Tax=Basidiobol... [more]
A0A482SNL3_9ARCH9.550e-1965.63Chromosome segregation protein SMC n=1 Tax=archaeo... [more]
A0A4D9CMM9_9STRA1.780e-1865.63Structural maintenance of chromosomes protein n=1 ... [more]
A0A183HPE9_9BILA6.180e-1873.47SMC_N domain-containing protein n=1 Tax=Onchocerca... [more]
SMC1_SCHPO6.200e-1879.59Structural maintenance of chromosomes protein 1 n=... [more]
A0A7S1YS26_9STRA7.410e-1868.97Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
K3WJ16_GLOUD8.470e-1865.63Structural maintenance of chromosomes protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8106contigS-dermatodea_contig8106:5636..5827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue3.3e-18
Seed eggNOG ortholog2880.D8LRP2
Preferred namesmc1
KEGG koko:K06636
KEGG Pathwayko04110,ko04111,ko04113,ko04114,map04110,map04111,map04113,map04114
GOsGO:0000793,GO:0000819,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008150,GO:0008278,GO:0009507,GO:0009536,GO:0009987,GO:0016043,GO:0022402,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0051276,GO:0071840,GO:0098813
EggNOG free text desc.sister chromatid cohesion
EggNOG OGsCOG1196@1,KOG0018@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925321.1664438-CDS-S-dermatodea_contig8106:5635..58271622925321.1664438-CDS-S-dermatodea_contig8106:5635..5827Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8106 5636..5827 +
1694079853.5899484-CDS-S-dermatodea_contig8106:5635..58271694079853.5899484-CDS-S-dermatodea_contig8106:5635..5827Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8106 5636..5827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8106.16301.1prot_S-dermatodea_contig8106.16301.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8106 5636..5827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8106.16301.1

>prot_S-dermatodea_contig8106.16301.1 ID=prot_S-dermatodea_contig8106.16301.1|Name=mRNA_S-dermatodea_contig8106.16301.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=64bp
MGRLMRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAIRYVLL
CISRTANASRALDL
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mRNA from alignment at S-dermatodea_contig8106:5636..5827+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8106.16301.1 ID=mRNA_S-dermatodea_contig8106.16301.1|Name=mRNA_S-dermatodea_contig8106.16301.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=192bp|location=Sequence derived from alignment at S-dermatodea_contig8106:5636..5827+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGCGACTCATGAGAATCGAGGCGGAAAACTTCAAGTCCTACGCTGG
AACTCAGATCATCGGCCCTTTCAAGGACTTCACGGCGGTGATAGGGCCCA
ACGGCGCCGGGAAATCCAACCTCATGGACGCCATCAGGTATGTTCTGTTG
TGCATCTCCCGCACGGCCAACGCAAGTCGCGCACTCGATCTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8106:5636..5827+

>mRNA_S-dermatodea_contig8106.16301.1 ID=mRNA_S-dermatodea_contig8106.16301.1|Name=mRNA_S-dermatodea_contig8106.16301.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at S-dermatodea_contig8106:5636..5827+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGCGACTCATGAGAATCGAGGCGGAAAACTTCAAGTCCTACGCTGG
AACTCAGATCATCGGCCCTTTCAAGGACTTCACGGCGGTGATAGGGCCCA
ACGGCGCCGGGAAATCCAACCTCATGGACGCCATCAGGTATGTTCTGTTG
TGCATCTCCCGCACGGCCAACGCAAGTCGCGCACTCGATCTCATGGGGCG
ACTCATGAGAATCGAGGCGGAAAACTTCAAGTCCTACGCTGGAACTCAGA
TCATCGGCCCTTTCAAGGACTTCACGGCGGTGATAGGGCCCAACGGCGCC
GGGAAATCCAACCTCATGGACGCCATCAGGTATGTTCTGTTGTGCATCTC
CCGCACGGCCAACGCAAGTCGCGCACTCGATCTC
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