mRNA_S-dermatodea_contig80843.16274.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig80843.16274.1
Unique NamemRNA_S-dermatodea_contig80843.16274.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig80843.16274.1 vs. uniprot
Match: D7FWW4_ECTSI (Protein required for templated centriole assembly n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW4_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 3.180e-12
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 1
Query:   16 KRYLILTYAAEFDRVHYPLPLARVELPAREKLERTIGRLGE 138
            KRYLILTYAAE+DRVHYPLPLA V+ P R++LERTI RL E
Sbjct:  152 KRYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRLRE 192          
BLAST of mRNA_S-dermatodea_contig80843.16274.1 vs. uniprot
Match: K3W5W9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5W9_GLOUD)

HSP 1 Score: 67.4 bits (163), Expect = 5.470e-12
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 1
Query:    1 GGGSGKRYLILTYAAEFDRVHYPLPLARVELPAREKLERTIGRLGE 138
            G  S KRYLILTYA EFDRVHYPLPLA V+ P+ E L+RTI RL +
Sbjct:  151 GAASNKRYLILTYAVEFDRVHYPLPLALVQTPSPEILQRTIRRLRQ 196          
BLAST of mRNA_S-dermatodea_contig80843.16274.1 vs. uniprot
Match: A0A6H5JQA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQA1_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.690e-12
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 1
Query:    4 GGSGKRYLILTYAAEFDRVHYPLPLARVELPAREKLERTIGRLGE 138
            G    RYLILTYAAE+DRVHYPLPLA V+ P R++LERTI RL E
Sbjct:   64 GNCHNRYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRLRE 108          
BLAST of mRNA_S-dermatodea_contig80843.16274.1 vs. uniprot
Match: A0A0P1B0U5_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0U5_PLAHL)

HSP 1 Score: 66.2 bits (160), Expect = 2.090e-11
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 1
Query:   10 SGKRYLILTYAAEFDRVHYPLPLARVELPAREKLERTIGRLGEV 141
            SGKRYLILTYA EFDRVHYPLPL + + P+ E L+RTI RL + 
Sbjct:  121 SGKRYLILTYAVEFDRVHYPLPLTQEQSPSPEVLQRTIRRLSQA 164          
BLAST of mRNA_S-dermatodea_contig80843.16274.1 vs. uniprot
Match: A0A8J5MGL1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MGL1_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 9.660e-11
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 1
Query:    7 GSGKRYLILTYAAEFDRVHYPLPLARVELPAREKLERTIGRLGEV 141
            G+GKRYLILTYA EFDRVHYPLPL +   P+ E L+RTI RL + 
Sbjct:  119 GNGKRYLILTYAVEFDRVHYPLPLIQELSPSPEVLQRTIRRLRQA 163          
BLAST of mRNA_S-dermatodea_contig80843.16274.1 vs. uniprot
Match: A0A8K1FMF0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMF0_PYTOL)

HSP 1 Score: 63.9 bits (154), Expect = 1.360e-10
Identity = 30/42 (71.43%), Postives = 32/42 (76.19%), Query Frame = 1
Query:   16 KRYLILTYAAEFDRVHYPLPLARVELPAREKLERTIGRLGEV 141
            KRYLILTYA EFDRVHYPLPL  VE P  E L+RTI RL + 
Sbjct:  139 KRYLILTYAVEFDRVHYPLPLQLVETPTPETLQRTIRRLRQA 180          
BLAST of mRNA_S-dermatodea_contig80843.16274.1 vs. uniprot
Match: A0A329RWN2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RWN2_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.870e-10
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 1
Query:    7 GSGKRYLILTYAAEFDRVHYPLPLARVELPAREKLERTIGRLGEV 141
            G+GKRYLILTYA EFDRVHYPLPL +   P  E L+RTI RL + 
Sbjct:  119 GNGKRYLILTYAVEFDRVHYPLPLIQELSPPPEVLQRTIRRLRQA 163          
BLAST of mRNA_S-dermatodea_contig80843.16274.1 vs. uniprot
Match: A0A3R7AUF9_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7AUF9_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.520e-10
Identity = 29/44 (65.91%), Postives = 33/44 (75.00%), Query Frame = 1
Query:   10 SGKRYLILTYAAEFDRVHYPLPLARVELPAREKLERTIGRLGEV 141
            + KRYLILTYA EFDRVHYPLPL  VE P+   L+RTI RL + 
Sbjct:   72 NNKRYLILTYAVEFDRVHYPLPLNFVETPSPAMLQRTIRRLKQT 115          
BLAST of mRNA_S-dermatodea_contig80843.16274.1 vs. uniprot
Match: A0A0W8DCY4_PHYNI (MORN repeat-containing protein 3 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DCY4_PHYNI)

HSP 1 Score: 62.4 bits (150), Expect = 4.650e-10
Identity = 29/44 (65.91%), Postives = 33/44 (75.00%), Query Frame = 1
Query:   10 SGKRYLILTYAAEFDRVHYPLPLARVELPAREKLERTIGRLGEV 141
            +GKRYLILTYA EFDRVHYPLPL     P+ E L+RTI RL + 
Sbjct:  121 TGKRYLILTYAVEFDRVHYPLPLTHEVSPSPEVLQRTIRRLRQA 164          
BLAST of mRNA_S-dermatodea_contig80843.16274.1 vs. uniprot
Match: A0A2P4XEK5_9STRA (Viable flagellar protein number 3 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XEK5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.760e-10
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1
Query:   10 SGKRYLILTYAAEFDRVHYPLPLARVELPAREKLERTIGRLGE 138
            +GKRYLILTYA EFDRVHYPLPL +   P+ E L+RTI RL +
Sbjct:  115 NGKRYLILTYAVEFDRVHYPLPLTQEISPSAEVLQRTIRRLRQ 157          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig80843.16274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWW4_ECTSI3.180e-1278.05Protein required for templated centriole assembly ... [more]
K3W5W9_GLOUD5.470e-1269.57Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6H5JQA1_9PHAE5.690e-1271.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0P1B0U5_PLAHL2.090e-1168.18Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A8J5MGL1_9STRA9.660e-1166.67Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A8K1FMF0_PYTOL1.360e-1071.43Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A329RWN2_9STRA1.870e-1066.67Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A3R7AUF9_9STRA3.520e-1065.91Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A0W8DCY4_PHYNI4.650e-1065.91MORN repeat-containing protein 3 n=1 Tax=Phytophth... [more]
A0A2P4XEK5_9STRA4.760e-1067.44Viable flagellar protein number 3 n=1 Tax=Phytopht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig80843contigS-dermatodea_contig80843:212..364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue5.8e-10
Seed eggNOG ortholog2880.D7FWW4
Preferred nameCCDC61
KEGG koko:K16755
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0015630,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464
EggNOG OGs28IZ0@1,2QRAS@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925318.7794282-CDS-S-dermatodea_contig80843:211..3641622925318.7794282-CDS-S-dermatodea_contig80843:211..364Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80843 212..364 +
1694079851.8072853-CDS-S-dermatodea_contig80843:211..3641694079851.8072853-CDS-S-dermatodea_contig80843:211..364Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80843 212..364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig80843.16274.1prot_S-dermatodea_contig80843.16274.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig80843 212..364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig80843.16274.1

>prot_S-dermatodea_contig80843.16274.1 ID=prot_S-dermatodea_contig80843.16274.1|Name=mRNA_S-dermatodea_contig80843.16274.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=51bp
GGGSGKRYLILTYAAEFDRVHYPLPLARVELPAREKLERTIGRLGEVRWW
*
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mRNA from alignment at S-dermatodea_contig80843:212..364+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig80843.16274.1 ID=mRNA_S-dermatodea_contig80843.16274.1|Name=mRNA_S-dermatodea_contig80843.16274.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at S-dermatodea_contig80843:212..364+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTGGCGGCAGCGGCAAGCGGTACCTTATACTGACCTACGCGGCGGAGTT TGACCGAGTCCATTACCCGCTTCCCCTGGCGCGCGTGGAGTTGCCGGCGA GGGAAAAGCTGGAGCGGACGATTGGCAGGCTCGGGGAGGTGAGGTGGTGG TGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig80843:212..364+

>mRNA_S-dermatodea_contig80843.16274.1 ID=mRNA_S-dermatodea_contig80843.16274.1|Name=mRNA_S-dermatodea_contig80843.16274.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at S-dermatodea_contig80843:212..364+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTGGCGGCAGCGGCAAGCGGTACCTTATACTGACCTACGCGGCGGAGTT
TGACCGAGTCCATTACCCGCTTCCCCTGGCGCGCGTGGAGTTGCCGGCGA
GGGAAAAGCTGGAGCGGACGATTGGCAGGCTCGGGGAGGTGAGGTGGTGG
TGAGGTGGCGGCAGCGGCAAGCGGTACCTTATACTGACCTACGCGGCGGA
GTTTGACCGAGTCCATTACCCGCTTCCCCTGGCGCGCGTGGAGTTGCCGG
CGAGGGAAAAGCTGGAGCGGACGATTGGCAGGCTCGGGGAGGTGAGGTGG
TGGTGA
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