mRNA_S-dermatodea_contig80799.16271.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig80799.16271.1
Unique NamemRNA_S-dermatodea_contig80799.16271.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig80799.16271.1 vs. uniprot
Match: D7FVY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY1_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.140e-19
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 QCYFIPYEIQDTDECSLAVGQPMRHKCHRSTVCINTLGSYECG 129
            QCY+IPYEI+DTDEC L  G PMRHKCHRSTVCINT+GSYECG
Sbjct:   35 QCYYIPYEIKDTDECRLEEGHPMRHKCHRSTVCINTVGSYECG 77
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BLAST of mRNA_S-dermatodea_contig80799.16271.1 vs. uniprot
Match: A0A7S4MS12_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MS12_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 8.200e-12
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 QCYFIPYEIQDTDECSLAVGQPMRHKCHRSTVCINTLGSYEC 126
            QC+ +P+ I DTDEC+L VG  MRHKC   +VC+NT+GSYEC
Sbjct:  207 QCFDVPFVILDTDECTLPVGHHMRHKCADPSVCVNTIGSYEC 248
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BLAST of mRNA_S-dermatodea_contig80799.16271.1 vs. uniprot
Match: B8BSL1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BSL1_THAPS)

HSP 1 Score: 61.2 bits (147), Expect = 8.910e-10
Identity = 21/42 (50.00%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 QCYFIPYEIQDTDECSLAVGQPMRHKCHRSTVCINTLGSYEC 126
            QC+ +P+ I D +EC++    PM H+CH  ++C+NTLGSYEC
Sbjct:  134 QCFEVPFTILDVNECTVESTHPMAHRCHPPSICVNTLGSYEC 175
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BLAST of mRNA_S-dermatodea_contig80799.16271.1 vs. uniprot
Match: UPI001EB035F1 (adhesion G protein-coupled receptor E2-like isoform X1 n=2 Tax=Marmota monax TaxID=9995 RepID=UPI001EB035F1)

HSP 1 Score: 47.4 bits (111), Expect = 7.030e-5
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:   28 QDTDECSLAVGQPMRHKCHRSTVCINTLGSYEC 126
            QD DECS       +H+CH+ST+C NTLGSY+C
Sbjct:  120 QDVDECSSG-----QHQCHQSTICTNTLGSYQC 147
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BLAST of mRNA_S-dermatodea_contig80799.16271.1 vs. uniprot
Match: A0A8C6D9K9_MOSMO (Adhesion G protein-coupled receptor E2 n=2 Tax=Moschus moschiferus TaxID=68415 RepID=A0A8C6D9K9_MOSMO)

HSP 1 Score: 47.0 bits (110), Expect = 9.610e-5
Identity = 19/33 (57.58%), Postives = 23/33 (69.70%), Query Frame = 1 
Query:   28 QDTDECSLAVGQPMRHKCHRSTVCINTLGSYEC 126
            +D DECS       RH+CH STVC+NT+GSY C
Sbjct:  137 RDVDECSSG-----RHRCHNSTVCVNTVGSYTC 164
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig80799.16271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FVY1_ECTSI1.140e-1983.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4MS12_9STRA8.200e-1261.90Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
B8BSL1_THAPS8.910e-1050.00Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
UPI001EB035F17.030e-557.58adhesion G protein-coupled receptor E2-like isofor... [more]
A0A8C6D9K9_MOSMO9.610e-557.58Adhesion G protein-coupled receptor E2 n=2 Tax=Mos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig80799contigS-dermatodea_contig80799:491..622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue2.3e-15
Seed eggNOG ortholog2880.D7FVY1
KEGG koko:K05120
EggNOG free text desc.calcium ion binding
EggNOG OGsKOG1217@1,KOG1217@2759
Ec32 ortholog descriptionEGF-like calcium-binding domain
Ec32 orthologEc-01_002580.1
EC2.7.10.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko01020,ko04050
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925318.6164508-CDS-S-dermatodea_contig80799:490..6221622925318.6164508-CDS-S-dermatodea_contig80799:490..622Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80799 491..622 +
1694079851.7215862-CDS-S-dermatodea_contig80799:490..6221694079851.7215862-CDS-S-dermatodea_contig80799:490..622Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80799 491..622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig80799.16271.1prot_S-dermatodea_contig80799.16271.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig80799 491..622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig80799.16271.1

>prot_S-dermatodea_contig80799.16271.1 ID=prot_S-dermatodea_contig80799.16271.1|Name=mRNA_S-dermatodea_contig80799.16271.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=44bp
QCYFIPYEIQDTDECSLAVGQPMRHKCHRSTVCINTLGSYECG*
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mRNA from alignment at S-dermatodea_contig80799:491..622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig80799.16271.1 ID=mRNA_S-dermatodea_contig80799.16271.1|Name=mRNA_S-dermatodea_contig80799.16271.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at S-dermatodea_contig80799:491..622+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGTGCTACTTCATCCCCTACGAGATCCAAGACACGGACGAGTGCAGCCT
CGCGGTTGGTCAGCCGATGCGCCACAAGTGCCACCGTAGCACCGTGTGCA
TCAACACGCTTGGGAGCTATGAGTGCGGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig80799:491..622+

>mRNA_S-dermatodea_contig80799.16271.1 ID=mRNA_S-dermatodea_contig80799.16271.1|Name=mRNA_S-dermatodea_contig80799.16271.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at S-dermatodea_contig80799:491..622+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGTGCTACTTCATCCCCTACGAGATCCAAGACACGGACGAGTGCAGCCT
CGCGGTTGGTCAGCCGATGCGCCACAAGTGCCACCGTAGCACCGTGTGCA
TCAACACGCTTGGGAGCTATGAGTGCGGGTGACAGTGCTACTTCATCCCC
TACGAGATCCAAGACACGGACGAGTGCAGCCTCGCGGTTGGTCAGCCGAT
GCGCCACAAGTGCCACCGTAGCACCGTGTGCATCAACACGCTTGGGAGCT
ATGAGTGCGGGTGA
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