prot_S-dermatodea_contig8079.16268.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8079.16268.1
Unique Nameprot_S-dermatodea_contig8079.16268.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length120
Homology
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BLAST of mRNA_S-dermatodea_contig8079.16268.1 vs. uniprot
Match: A0A6H5L4D5_9PHAE (PFU domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4D5_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 4.830e-37
Identity = 71/119 (59.66%), Postives = 84/119 (70.59%), Query Frame = 0 
Query:   11 DVPEFFLCAALEGHEGDVRSLAVGARHLYSGARDNAVMAWELDKNGHIGGIHRSPSAKTPLPDWVNALTVRQ--GESEVVVGGCKDGGIYVMEWKGGIEAS--------GGEKRLVVEK 119
            D+PEF LCAAL GH GDVRSLAVG R+LYSGARD+ VMAW LD++GHI G H +P+A+  LPDWVNAL V+   G  EV+VGGCKDGGIY + W+ G  A         G   +LVV K
Sbjct:   32 DIPEFSLCAALVGHTGDVRSLAVGKRNLYSGARDSVVMAWPLDEDGHIDGTHVAPAAQVTLPDWVNALAVKSPAGGEEVIVGGCKDGGIYAVGWEEGGPAXXXXXXXXXGNGAKLVVRK 150
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8079.16268.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4D5_9PHAE4.830e-3759.66PFU domain-containing protein n=2 Tax=Ectocarpus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 11..116
e-value: 1.3E-8
score: 35.8
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 38..52
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 21..60
score: 9.257
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 21..53
score: 9.606
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 19..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8079contigS-dermatodea_contig8079:5517..7952 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8079.16268.1mRNA_S-dermatodea_contig8079.16268.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8079 5517..7952 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8079.16268.1 ID=prot_S-dermatodea_contig8079.16268.1|Name=mRNA_S-dermatodea_contig8079.16268.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=120bp
AANLSAEGRDDVPEFFLCAALEGHEGDVRSLAVGARHLYSGARDNAVMAW
ELDKNGHIGGIHRSPSAKTPLPDWVNALTVRQGESEVVVGGCKDGGIYVM
EWKGGIEASGGEKRLVVEK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
IPR036322WD40_repeat_dom_sf