mRNA_S-dermatodea_contig807.16255.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig807.16255.1
Unique NamemRNA_S-dermatodea_contig807.16255.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig807.16255.1 vs. uniprot
Match: A0A6H5JNA9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNA9_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 3.100e-37
Identity = 91/155 (58.71%), Postives = 113/155 (72.90%), Query Frame = 1 
Query:    1 PLTAAQRREAAQKTAFERKKPNPNAEQKLAALRALVNDAEEALGKRKEHPFRRWKVGATVYALKNHSKFLAKELLLPTGKGTDASNCHDEEAEEEEFSDDDKERLAAIEAKKRGKREKLAEQGVLPHEIDAIFDEDEGKRLRRKAKRDA-NAAAK 462
            P+T AQ RE A + A   K+PNPN +QKL  +R +V DA+EA+  R  HPF RWK G TVYALKN ++ L KE +L   KGTDASNCHDEEA+EEEFSDD++E LA   AK++ KR+ LA +GVLP EIDAI   ++  R ++KAKRDA NAAAK
Sbjct:  392 PMTGAQIREEAMRRA-RAKEPNPNNDQKLEEIRKVVADAQEAMLTRDLHPFSRWKTGTTVYALKN-AQMLQKEKILHD-KGTDASNCHDEEADEEEFSDDEQEMLAIARAKEKKKRDDLAMKGVLPDEIDAIIAGEQEMRRQKKAKRDASNAAAK 543
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig807.16255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JNA9_9PHAE3.100e-3758.71Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig807contigS-dermatodea_contig807:8469..9949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_005580.1
Exons3
Model size484
Cds size483
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig807.16255.1prot_S-dermatodea_contig807.16255.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig807 8470..9949 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925317.5677874-CDS-S-dermatodea_contig807:8469..86461622925317.5677874-CDS-S-dermatodea_contig807:8469..8646Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig807 8470..8646 -
1694079851.0353043-CDS-S-dermatodea_contig807:8469..86461694079851.0353043-CDS-S-dermatodea_contig807:8469..8646Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig807 8470..8646 -
1622925317.5779626-CDS-S-dermatodea_contig807:8994..91351622925317.5779626-CDS-S-dermatodea_contig807:8994..9135Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig807 8995..9135 -
1694079851.0440943-CDS-S-dermatodea_contig807:8994..91351694079851.0440943-CDS-S-dermatodea_contig807:8994..9135Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig807 8995..9135 -
1622925317.5888515-CDS-S-dermatodea_contig807:9784..99491622925317.5888515-CDS-S-dermatodea_contig807:9784..9949Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig807 9785..9949 -
1694079851.0561495-CDS-S-dermatodea_contig807:9784..99491694079851.0561495-CDS-S-dermatodea_contig807:9784..9949Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig807 9785..9949 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig807.16255.1

>prot_S-dermatodea_contig807.16255.1 ID=prot_S-dermatodea_contig807.16255.1|Name=mRNA_S-dermatodea_contig807.16255.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=161bp
PLTAAQRREAAQKTAFERKKPNPNAEQKLAALRALVNDAEEALGKRKEHP
FRRWKVGATVYALKNHSKFLAKELLLPTGKGTDASNCHDEEAEEEEFSDD
DKERLAAIEAKKRGKREKLAEQGVLPHEIDAIFDEDEGKRLRRKAKRDAN
AAAKGGGRGRG
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mRNA from alignment at S-dermatodea_contig807:8469..9949-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig807.16255.1 ID=mRNA_S-dermatodea_contig807.16255.1|Name=mRNA_S-dermatodea_contig807.16255.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1481bp|location=Sequence derived from alignment at S-dermatodea_contig807:8469..9949- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGCTGACCGCGGCCCAGAGGCGCGAGGCGGCGCAAAAAACGGCATTCGA
GAGGAAGAAACCGAATCCTAACGCCGAGCAGAAGCTCGCCGCCCTGCGTG
CGTTGGTCAATGATGCCGAGGAGGCCCTGGGAAAACGAAAAGAGCATCCG
TTCCGCCGTTGGAAGGTGGGTGCTGGGCGGGCGCGGCGCATGGAGTCGCA
GGTCGTTGATTCGTCAATCGTGTCGGGTGGACCATGGCTGGGTTTGGGGT
GAAGGTCGCTCACTTGATTGACAGCGTGTCGGGGGTGGAGGGCTCGTGTT
ATGGTGCGTGCAGTTGGTGGGTGCGGCGAGCGCAGTAGTGTGTTATAGCT
TTTTTGCGGCAGGGAAAGCTAGGGTGCATTATGTAGGTCTACATTTCCTT
TGTCCTATCATACTTATAGGGACGCATAGTGCTGATCCAGCCACGTGTCA
CTTGACGCCCAGGGGGCCTAGTATTGTGAATGCTTGCCGCGAGTCGTTTC
GCCAGCCGCGATCGCCGCGTGAAATGATCGCACGGCGTAGTGGCGTGTTG
ATGAGGGGATGTGGCATTTTTAATACCTTGTTTCTACGCTCTTGCAGGGT
GAGGCGAGGCCCCACGAATCACCCGAAACTAGCACCAAGACGAAACAAAA
AAAAAACGCTTGGAATAAGCAGAAACCACCTTGGCGGTTGCCGGCGTGCT
TTCCAAGTTCCGCCAAAACAATCGCTTGTGCAGGCACCATCGACCGTTGT
TTAAGCCCATATTTCACAAGTGCTAGAAGTGTCACTAATGGCACTCGTCG
CCCCGCGGCCGCAGGTGGGAGCGACTGTTTACGCGCTCAAAAACCACTCC
AAGTTCTTGGCAAAGGAGCTGCTCTTGCCGACTGGTAAAGGGACGGACGC
TTCCAACTGCCACGACGAGGAGGCGGAAGAGGAGGAGTTCTCGGACGATG
ACAAGGTACGCCCATCCGCCATATTTTTGCCTTTTTCGTTGTCGGGACGA
AAAAGACGCAGGCTCGTTCGCGCGCAACTCGTTTTCACCATTGTATTTAA
CCCTACTTCGTGCATACTGGTACGTTTTACAACATAATAGGCGCAGAGCC
TTTCCCTTCCATTAATTAATACCCCCCCCCTTCCGCGAGGTCTATGACGT
AACGACTACAGCATGCACGATCAATGCTTACCCCCCCCCCCCCTCCGCCG
ACCGCATTCTCCGTCGTCTCGAAGACGCGTTGTCAATGGTCTAACAGCTA
AGGCATGCAAAACATGAGTACGCCCCCCCACCCCTATTGTCACCTCTGCG
CAGGAACGTCTGGCCGCTATCGAAGCCAAAAAGCGAGGGAAGCGTGAGAA
ACTGGCCGAGCAGGGCGTCCTTCCACACGAAATTGACGCGATTTTCGACG
AAGACGAGGGAAAACGCCTCCGGCGGAAGGCTAAGAGAGACGCCAACGCC
GCTGCTAAGGGAGGGGGCCGGGGACGCGGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig807:8469..9949-

>mRNA_S-dermatodea_contig807.16255.1 ID=mRNA_S-dermatodea_contig807.16255.1|Name=mRNA_S-dermatodea_contig807.16255.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at S-dermatodea_contig807:8469..9949- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGCTGACCGCGGCCCAGAGGCGCGAGGCGGCGCAAAAAACGGCATTCGA
GAGGAAGAAACCGAATCCTAACGCCGAGCAGAAGCTCGCCGCCCTGCGTG
CGTTGGTCAATGATGCCGAGGAGGCCCTGGGAAAACGAAAAGAGCATCCG
TTCCGCCGTTGGAAGCCGCTGACCGCGGCCCAGAGGCGCGAGGCGGCGCA
AAAAACGGCATTCGAGAGGAAGAAACCGAATCCTAACGCCGAGCAGAAGC
TCGCCGCCCTGCGTGCGTTGGTCAATGATGCCGAGGAGGCCCTGGGAAAA
CGAAAAGAGCATCCGTTCCGCCGTTGGAAGGTGGGAGCGACTGTTTACGC
GCTCAAAAACCACTCCAAGTTCTTGGCAAAGGAGCTGCTCTTGCCGACTG
GTAAAGGGACGGACGCTTCCAACTGCCACGACGAGGAGGCGGAAGAGGAG
GAGTTCTCGGACGATGACAAGGTGGGAGCGACTGTTTACGCGCTCAAAAA
CCACTCCAAGTTCTTGGCAAAGGAGCTGCTCTTGCCGACTGGTAAAGGGA
CGGACGCTTCCAACTGCCACGACGAGGAGGCGGAAGAGGAGGAGTTCTCG
GACGATGACAAGGAACGTCTGGCCGCTATCGAAGCCAAAAAGCGAGGGAA
GCGTGAGAAACTGGCCGAGCAGGGCGTCCTTCCACACGAAATTGACGCGA
TTTTCGACGAAGACGAGGGAAAACGCCTCCGGCGGAAGGCTAAGAGAGAC
GCCAACGCCGCTGCTAAGGGAGGGGGCCGGGGACGCGGGGAACGTCTGGC
CGCTATCGAAGCCAAAAAGCGAGGGAAGCGTGAGAAACTGGCCGAGCAGG
GCGTCCTTCCACACGAAATTGACGCGATTTTCGACGAAGACGAGGGAAAA
CGCCTCCGGCGGAAGGCTAAGAGAGACGCCAACGCCGCTGCTAAGGGAGG
GGGCCGGGGACGCGGG
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