mRNA_S-dermatodea_contig80697.16253.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig80697.16253.1
Unique NamemRNA_S-dermatodea_contig80697.16253.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig80697.16253.1 vs. uniprot
Match: A0A8F0JZU4_9PHAE (Sec-independent protein translocase component TatC n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZU4_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 3.330e-50
Identity = 86/119 (72.27%), Postives = 107/119 (89.92%), Query Frame = 1 
Query:    1 YFILIPAALNFFLFYASEVLEPFLSFNQYFSFVSTLFFSTALVFQLPIIQVLLSLFQVVDPVNMLNCWRPMILFSTILGAILTPSADPITQLLLSSALFFLYFLGTNVALYIKKKKISI 357
            YFILIPAALNFF+FY SEV+EPF SF+QYF+FVS LFFST LVFQ+PI+Q++LSL +++DP+ MLN WRPMIL ST+LGAILTPSADPITQLLLS ALFFLYFLG+ +++ + KK+++I
Sbjct:  142 YFILIPAALNFFIFYGSEVIEPFWSFSQYFNFVSALFFSTGLVFQVPIVQIILSLAKLIDPIKMLNYWRPMILLSTVLGAILTPSADPITQLLLSGALFFLYFLGSLISINLTKKEVTI 260
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BLAST of mRNA_S-dermatodea_contig80697.16253.1 vs. uniprot
Match: A0A0R6LUQ7_UNDPI (Sec-independent protein translocase component n=24 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUQ7_UNDPI)

HSP 1 Score: 168 bits (425), Expect = 6.490e-50
Identity = 86/117 (73.50%), Postives = 105/117 (89.74%), Query Frame = 1 
Query:    1 YFILIPAALNFFLFYASEVLEPFLSFNQYFSFVSTLFFSTALVFQLPIIQVLLSLFQVVDPVNMLNCWRPMILFSTILGAILTPSADPITQLLLSSALFFLYFLGTNVALYIKKKKI 351
            YF+LIPAALNFF+FY SEV+EPF SF QYF+FVSTLFFST LVFQ+PI+Q++LSL +++DP+ MLN WRPMILFSTILGA+LTPSADPITQLLLSSALF LYFLG+  ++ + KK++
Sbjct:  143 YFLLIPAALNFFIFYGSEVIEPFWSFTQYFNFVSTLFFSTGLVFQVPIVQIILSLSKIIDPIKMLNYWRPMILFSTILGAVLTPSADPITQLLLSSALFLLYFLGSITSINLVKKEV 259
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BLAST of mRNA_S-dermatodea_contig80697.16253.1 vs. uniprot
Match: A0A8F0JYG0_9PHAE (Sec-independent protein translocase component TatC n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JYG0_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 9.450e-50
Identity = 89/114 (78.07%), Postives = 104/114 (91.23%), Query Frame = 1 
Query:    1 YFILIPAALNFFLFYASEVLEPFLSFNQYFSFVSTLFFSTALVFQLPIIQVLLSLFQVVDPVNMLNCWRPMILFSTILGAILTPSADPITQLLLSSALFFLYFLGTNVALYIKK 342
            Y++LIPAALNFF+FY+SEVLEPFLSFN+YF+F STLFFSTALVFQLPIIQ+LLS+F+V++P  M+  WR MIL STILGAILTPSADPITQLLLSSALF LY LGTNV++Y+ K
Sbjct:  142 YYLLIPAALNFFIFYSSEVLEPFLSFNEYFNFASTLFFSTALVFQLPIIQILLSVFKVINPRIMIEYWRAMILLSTILGAILTPSADPITQLLLSSALFILYILGTNVSIYLTK 255
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BLAST of mRNA_S-dermatodea_contig80697.16253.1 vs. uniprot
Match: A0A141BSG3_9PHAE (TatC n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSG3_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 2.300e-49
Identity = 85/116 (73.28%), Postives = 104/116 (89.66%), Query Frame = 1 
Query:    1 YFILIPAALNFFLFYASEVLEPFLSFNQYFSFVSTLFFSTALVFQLPIIQVLLSLFQVVDPVNMLNCWRPMILFSTILGAILTPSADPITQLLLSSALFFLYFLGTNVALYIKKKK 348
            YF+LIPAA+NFF+FY SEV+EP  SFNQYF+FVS LFFST LVFQ+PI+Q++LSLF++VDP+ M N WRPMILFSTILGAILTPSADPITQLLLSSALF LYF+G+ +++ + KK+
Sbjct:  143 YFLLIPAAINFFIFYGSEVIEPLWSFNQYFTFVSALFFSTGLVFQVPIVQIILSLFKIVDPIKMFNYWRPMILFSTILGAILTPSADPITQLLLSSALFLLYFIGSLISINLIKKQ 258
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BLAST of mRNA_S-dermatodea_contig80697.16253.1 vs. uniprot
Match: A0A7U1AQM0_9PHAE (Sec-independent protein translocase component TatC n=4 Tax=Laminariales TaxID=2886 RepID=A0A7U1AQM0_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 1.490e-48
Identity = 84/117 (71.79%), Postives = 104/117 (88.89%), Query Frame = 1 
Query:    1 YFILIPAALNFFLFYASEVLEPFLSFNQYFSFVSTLFFSTALVFQLPIIQVLLSLFQVVDPVNMLNCWRPMILFSTILGAILTPSADPITQLLLSSALFFLYFLGTNVALYIKKKKI 351
            YF+LIPAALNFF+FY +EV+EPF SF QYF+FVSTLFFST LVFQ+PI+Q++LSL ++VDP+ MLN WRPMILFSTILGA+LTPSADPITQLLLS ALF LYFLG+  ++ + K+++
Sbjct:  143 YFLLIPAALNFFIFYGAEVIEPFWSFTQYFNFVSTLFFSTGLVFQVPIVQIILSLSKIVDPIKMLNYWRPMILFSTILGAVLTPSADPITQLLLSGALFLLYFLGSITSINLVKREV 259
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BLAST of mRNA_S-dermatodea_contig80697.16253.1 vs. uniprot
Match: A0A8F0F9L1_9PHAE (Sec-independent protein translocase component TatC n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9L1_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 1.260e-47
Identity = 86/116 (74.14%), Postives = 103/116 (88.79%), Query Frame = 1 
Query:    1 YFILIPAALNFFLFYASEVLEPFLSFNQYFSFVSTLFFSTALVFQLPIIQVLLSLFQVVDPVNMLNCWRPMILFSTILGAILTPSADPITQLLLSSALFFLYFLGTNVALYIKKKK 348
            YF+LIPAALNFF+FY SEV+EPF SF QYF+FVSTLFFST LVFQ+PI+QV+LSL +++DP  ML+ WRPMILFSTILGAILTPSADPITQLLL+ ALFFLYFLG+  ++ + KK+
Sbjct:  143 YFLLIPAALNFFIFYGSEVVEPFWSFTQYFNFVSTLFFSTGLVFQVPIVQVILSLSRLIDPKKMLDYWRPMILFSTILGAILTPSADPITQLLLAGALFFLYFLGSITSINLIKKE 258
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BLAST of mRNA_S-dermatodea_contig80697.16253.1 vs. uniprot
Match: A0A2R4QPY8_9PHAE (Sec-independent protein translocase component TatC n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPY8_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 2.530e-47
Identity = 85/117 (72.65%), Postives = 101/117 (86.32%), Query Frame = 1 
Query:    1 YFILIPAALNFFLFYASEVLEPFLSFNQYFSFVSTLFFSTALVFQLPIIQVLLSLFQVVDPVNMLNCWRPMILFSTILGAILTPSADPITQLLLSSALFFLYFLGTNVALYIKKKKI 351
            YF+LIPAALNFF+FY SEV+EP  SFNQYF+FVS LFFST LVFQ+PI+QV+LSL +++DP+ M N WRPMILFSTILGA+LTPSADPITQLLLSSALF LY LG+  ++ + KK I
Sbjct:  143 YFLLIPAALNFFVFYGSEVIEPLWSFNQYFNFVSALFFSTGLVFQVPIVQVILSLSKIIDPIKMFNYWRPMILFSTILGAVLTPSADPITQLLLSSALFLLYILGSITSINLIKKPI 259
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BLAST of mRNA_S-dermatodea_contig80697.16253.1 vs. uniprot
Match: A0A2I4Q2T2_9PHAE (Sec-independent protein translocase component TatC n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2T2_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 1.980e-46
Identity = 82/114 (71.93%), Postives = 98/114 (85.96%), Query Frame = 1 
Query:    1 YFILIPAALNFFLFYASEVLEPFLSFNQYFSFVSTLFFSTALVFQLPIIQVLLSLFQVVDPVNMLNCWRPMILFSTILGAILTPSADPITQLLLSSALFFLYFLGTNVALYIKK 342
            YFILIPAALNFF+FY+SEVLEPFLSF +Y++FV++LF ST LVFQLPI+Q++ S   +++P  MLN WRPMIL STILGAILTPSADPITQLLLS ALF LYFLGT  ++Y+ K
Sbjct:  143 YFILIPAALNFFIFYSSEVLEPFLSFEEYYNFVASLFISTGLVFQLPIVQIIFSFANIINPTQMLNLWRPMILLSTILGAILTPSADPITQLLLSLALFLLYFLGTTTSIYLTK 256
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BLAST of mRNA_S-dermatodea_contig80697.16253.1 vs. uniprot
Match: A0A5A4MKB0_9PHAE (Sec-independent periplasmic protein translocase n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MKB0_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 1.030e-44
Identity = 83/117 (70.94%), Postives = 99/117 (84.62%), Query Frame = 1 
Query:    1 YFILIPAALNFFLFYASEVLEPFLSFNQYFSFVSTLFFSTALVFQLPIIQVLLSLFQVVDPVNMLNCWRPMILFSTILGAILTPSADPITQLLLSSALFFLYFLGTNVALYIKKKKI 351
            YF+L+PAALNFFL Y S+V+EP  SF QYFSFVSTLF S  LVFQ+PIIQV+LS+ +++DPV ML  WRPMILF T+LGAILTPSADPITQLLLSSALFFLYFLG+  ++ +  KK+
Sbjct:  150 YFLLVPAALNFFLLYGSDVVEPLWSFTQYFSFVSTLFVSAGLVFQVPIIQVMLSVSRIIDPVKMLGYWRPMILFCTMLGAILTPSADPITQLLLSSALFFLYFLGSLTSINLINKKL 266
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BLAST of mRNA_S-dermatodea_contig80697.16253.1 vs. uniprot
Match: D1J7B2_ECTSI (Sec-independent periplasmic protein translocase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J7B2_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 1.460e-44
Identity = 82/117 (70.09%), Postives = 98/117 (83.76%), Query Frame = 1 
Query:    1 YFILIPAALNFFLFYASEVLEPFLSFNQYFSFVSTLFFSTALVFQLPIIQVLLSLFQVVDPVNMLNCWRPMILFSTILGAILTPSADPITQLLLSSALFFLYFLGTNVALYIKKKKI 351
            YF+L+PAALNFFL Y S+V+EP  SF QYFSFVSTLF S  LVFQ+PIIQ++LS+ +++DPV ML+CWRPMIL  TILGAILTPSADPITQLLLSSALF LYFLG+  ++ I  K +
Sbjct:  150 YFLLVPAALNFFLIYGSDVVEPLWSFTQYFSFVSTLFVSAGLVFQVPIIQIMLSVSRIIDPVEMLSCWRPMILLCTILGAILTPSADPITQLLLSSALFLLYFLGSITSINIINKNL 266
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig80697.16253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0JZU4_9PHAE3.330e-5072.27Sec-independent protein translocase component TatC... [more]
A0A0R6LUQ7_UNDPI6.490e-5073.50Sec-independent protein translocase component n=24... [more]
A0A8F0JYG0_9PHAE9.450e-5078.07Sec-independent protein translocase component TatC... [more]
A0A141BSG3_9PHAE2.300e-4973.28TatC n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141... [more]
A0A7U1AQM0_9PHAE1.490e-4871.79Sec-independent protein translocase component TatC... [more]
A0A8F0F9L1_9PHAE1.260e-4774.14Sec-independent protein translocase component TatC... [more]
A0A2R4QPY8_9PHAE2.530e-4772.65Sec-independent protein translocase component TatC... [more]
A0A2I4Q2T2_9PHAE1.980e-4671.93Sec-independent protein translocase component TatC... [more]
A0A5A4MKB0_9PHAE1.030e-4470.94Sec-independent periplasmic protein translocase n=... [more]
D1J7B2_ECTSI1.460e-4470.09Sec-independent periplasmic protein translocase n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig80697contigS-dermatodea_contig80697:425..784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.5
Seed ortholog evalue3.2e-35
Seed eggNOG ortholog2880.D1J7B2
Preferred nametatC
KEGG koko:K02634,ko:K03118
KEGG TC2.A.64
KEGG Pathwayko00195,ko01100,ko03060,ko03070,map00195,map01100,map03060,map03070
KEGG ModuleM00162,M00336
GOsGO:0000003,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006810,GO:0006886,GO:0006996,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009566,GO:0009567,GO:0009579,GO:0009657,GO:0009668,GO:0009977,GO:0009987,GO:0010027,GO:0015031,GO:0015291,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0019953,GO:0022414,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0031360,GO:0031361,GO:0031976,GO:0031984,GO:0032991,GO:0033036,GO:0033281,GO:0034357,GO:0034613,GO:0042651,GO:0042886,GO:0042887,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043235,GO:0043953,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0055035,GO:0055085,GO:0061024,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0098796,GO:0098797,GO:1904680
EggNOG free text desc.protein transport by the Tat complex
EggNOG OGs2QVCB@2759,COG0805@1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194,ko02044
Hectar predicted targeting categorysignal peptide
Exons1
Model size360
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925317.53588-CDS-S-dermatodea_contig80697:424..7841622925317.53588-CDS-S-dermatodea_contig80697:424..784Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80697 425..784 -
1694079851.0209925-CDS-S-dermatodea_contig80697:424..7841694079851.0209925-CDS-S-dermatodea_contig80697:424..784Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80697 425..784 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig80697.16253.1prot_S-dermatodea_contig80697.16253.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig80697 425..784 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig80697.16253.1

>prot_S-dermatodea_contig80697.16253.1 ID=prot_S-dermatodea_contig80697.16253.1|Name=mRNA_S-dermatodea_contig80697.16253.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=120bp
YFILIPAALNFFLFYASEVLEPFLSFNQYFSFVSTLFFSTALVFQLPIIQ
VLLSLFQVVDPVNMLNCWRPMILFSTILGAILTPSADPITQLLLSSALFF
LYFLGTNVALYIKKKKISI*
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mRNA from alignment at S-dermatodea_contig80697:425..784-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig80697.16253.1 ID=mRNA_S-dermatodea_contig80697.16253.1|Name=mRNA_S-dermatodea_contig80697.16253.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at S-dermatodea_contig80697:425..784- (Saccorhiza dermatodea SderLu1190fm monoicous)
TATTTTATTTTAATTCCTGCCGCTTTAAATTTTTTTCTTTTTTATGCCTC
AGAAGTTTTAGAGCCTTTTTTATCGTTTAATCAATATTTTAGTTTTGTTT
CTACTTTATTTTTTAGTACAGCACTTGTTTTTCAACTACCGATTATTCAA
GTTCTTTTAAGTTTATTTCAAGTAGTTGACCCAGTAAATATGCTAAATTG
TTGGCGTCCTATGATATTATTTTCTACAATTTTAGGTGCAATATTAACCC
CTTCTGCGGATCCTATAACACAACTATTATTATCAAGTGCCTTATTTTTT
TTATATTTTTTAGGAACTAATGTCGCACTATATATTAAAAAAAAGAAAAT
AAGTATTTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig80697:425..784-

>mRNA_S-dermatodea_contig80697.16253.1 ID=mRNA_S-dermatodea_contig80697.16253.1|Name=mRNA_S-dermatodea_contig80697.16253.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at S-dermatodea_contig80697:425..784- (Saccorhiza dermatodea SderLu1190fm monoicous)
TATTTTATTTTAATTCCTGCCGCTTTAAATTTTTTTCTTTTTTATGCCTC
AGAAGTTTTAGAGCCTTTTTTATCGTTTAATCAATATTTTAGTTTTGTTT
CTACTTTATTTTTTAGTACAGCACTTGTTTTTCAACTACCGATTATTCAA
GTTCTTTTAAGTTTATTTCAAGTAGTTGACCCAGTAAATATGCTAAATTG
TTGGCGTCCTATGATATTATTTTCTACAATTTTAGGTGCAATATTAACCC
CTTCTGCGGATCCTATAACACAACTATTATTATCAAGTGCCTTATTTTTT
TTATATTTTTTAGGAACTAATGTCGCACTATATATTAAAAAAAAGAAAAT
AAGTATTTAATATTTTATTTTAATTCCTGCCGCTTTAAATTTTTTTCTTT
TTTATGCCTCAGAAGTTTTAGAGCCTTTTTTATCGTTTAATCAATATTTT
AGTTTTGTTTCTACTTTATTTTTTAGTACAGCACTTGTTTTTCAACTACC
GATTATTCAAGTTCTTTTAAGTTTATTTCAAGTAGTTGACCCAGTAAATA
TGCTAAATTGTTGGCGTCCTATGATATTATTTTCTACAATTTTAGGTGCA
ATATTAACCCCTTCTGCGGATCCTATAACACAACTATTATTATCAAGTGC
CTTATTTTTTTTATATTTTTTAGGAACTAATGTCGCACTATATATTAAAA
AAAAGAAAATAAGTATTTAA
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