mRNA_S-dermatodea_contig80695.16251.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig80695.16251.1
Unique NamemRNA_S-dermatodea_contig80695.16251.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig80695.16251.1 vs. uniprot
Match: D8LD80_ECTSI (KH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD80_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 3.540e-18
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    1 SRAIGRIAGQGGKTRHAIENATRTRIIVAEQKVHILGSFGNIKV 132
            SRAIGRIAGQGGKTRHAIENATRTRIIVA+QKVHILGSF NIKV
Sbjct:  168 SRAIGRIAGQGGKTRHAIENATRTRIIVADQKVHILGSFSNIKV 211
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BLAST of mRNA_S-dermatodea_contig80695.16251.1 vs. uniprot
Match: A0A7S2XZF6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZF6_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 6.630e-16
Identity = 36/44 (81.82%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 SRAIGRIAGQGGKTRHAIENATRTRIIVAEQKVHILGSFGNIKV 132
            SRAIGRIAGQ GKTRHAIENATRTR++VA+Q++HILGSF NI+V
Sbjct:  156 SRAIGRIAGQDGKTRHAIENATRTRVVVADQRIHILGSFANIRV 199
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BLAST of mRNA_S-dermatodea_contig80695.16251.1 vs. uniprot
Match: A0A7S3PRC7_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PRC7_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 9.600e-16
Identity = 37/44 (84.09%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 SRAIGRIAGQGGKTRHAIENATRTRIIVAEQKVHILGSFGNIKV 132
            SRAIGRIAGQGGKTR AIENATRTRI++A+QK+HILGSF NIK+
Sbjct:  158 SRAIGRIAGQGGKTRFAIENATRTRIVLADQKIHILGSFQNIKI 201
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BLAST of mRNA_S-dermatodea_contig80695.16251.1 vs. uniprot
Match: A0A2R5GT26_9STRA (Pre-rRNA-processing protein pno1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GT26_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.020e-15
Identity = 36/44 (81.82%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    1 SRAIGRIAGQGGKTRHAIENATRTRIIVAEQKVHILGSFGNIKV 132
            SRAIGRIAGQGGKT++AIENATRTRI+VA+Q++HILGSF NIK+
Sbjct:  162 SRAIGRIAGQGGKTKYAIENATRTRIVVADQRIHILGSFQNIKI 205
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BLAST of mRNA_S-dermatodea_contig80695.16251.1 vs. uniprot
Match: W7T9Z3_9STRA (Rna-binding protein pno1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T9Z3_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 3.580e-15
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 SRAIGRIAGQGGKTRHAIENATRTRIIVAEQKVHILGSFGNIK 129
            SRAIGRIAGQ GKTR AIENATRTRI+VA+Q VHILGSF NIK
Sbjct:   82 SRAIGRIAGQAGKTRFAIENATRTRIVVADQHVHILGSFANIK 124
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BLAST of mRNA_S-dermatodea_contig80695.16251.1 vs. uniprot
Match: A0A835ZET5_9STRA (RNA-binding protein PNO1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZET5_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.000e-15
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 SRAIGRIAGQGGKTRHAIENATRTRIIVAEQKVHILGSFGNIKV 132
            SRAIGR+AGQ GKTRHAIENATRTR+IVA+ ++HILGSF NI+V
Sbjct:  163 SRAIGRVAGQDGKTRHAIENATRTRVIVADHRIHILGSFANIRV 206
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BLAST of mRNA_S-dermatodea_contig80695.16251.1 vs. uniprot
Match: B8C5R0_THAPS (KH domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5R0_THAPS)

HSP 1 Score: 72.8 bits (177), Expect = 1.360e-14
Identity = 32/43 (74.42%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 SRAIGRIAGQGGKTRHAIENATRTRIIVAEQKVHILGSFGNIK 129
            SRAIGR+AGQ GKTR AIENATRTR+++A+Q++H+LGS+GNIK
Sbjct:  133 SRAIGRVAGQDGKTRFAIENATRTRVVIADQRIHLLGSYGNIK 175
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BLAST of mRNA_S-dermatodea_contig80695.16251.1 vs. uniprot
Match: A0A6T5QRH5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5QRH5_HETAK)

HSP 1 Score: 73.2 bits (178), Expect = 1.370e-14
Identity = 34/44 (77.27%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 SRAIGRIAGQGGKTRHAIENATRTRIIVAEQKVHILGSFGNIKV 132
            SRAIGR+AGQ GKTR+AIENATRTRI+VA+Q++HILGS+ NI+V
Sbjct:  155 SRAIGRVAGQDGKTRYAIENATRTRIVVADQRIHILGSYANIRV 198
[Close]
BLAST of mRNA_S-dermatodea_contig80695.16251.1 vs. uniprot
Match: A0A2D4BJV4_PYTIN (RNA-binding protein PNO1-like protein n=4 Tax=Pythium TaxID=4797 RepID=A0A2D4BJV4_PYTIN)

HSP 1 Score: 73.2 bits (178), Expect = 1.450e-14
Identity = 34/43 (79.07%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 SRAIGRIAGQGGKTRHAIENATRTRIIVAEQKVHILGSFGNIK 129
            SRAIGR+AGQ GKT++AIENATRTRI++A+QK+HILGSF NIK
Sbjct:  159 SRAIGRVAGQDGKTKYAIENATRTRIVLADQKIHILGSFANIK 201
[Close]
BLAST of mRNA_S-dermatodea_contig80695.16251.1 vs. uniprot
Match: A0A8J9S7D6_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S7D6_PHATR)

HSP 1 Score: 71.2 bits (173), Expect = 1.590e-14
Identity = 34/44 (77.27%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 SRAIGRIAGQGGKTRHAIENATRTRIIVAEQKVHILGSFGNIKV 132
            SRAIGRIAGQ GKTR AIENATRTRI+VA+Q+VH+LGS+ N++V
Sbjct:   71 SRAIGRIAGQDGKTRFAIENATRTRIVVADQRVHLLGSYANLRV 114
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig80695.16251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD80_ECTSI3.540e-1895.45KH domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S2XZF6_9STRA6.630e-1681.82Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3PRC7_9STRA9.600e-1684.09Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A2R5GT26_9STRA1.020e-1581.82Pre-rRNA-processing protein pno1 n=1 Tax=Hondaea f... [more]
W7T9Z3_9STRA3.580e-1586.05Rna-binding protein pno1 n=2 Tax=Monodopsidaceae T... [more]
A0A835ZET5_9STRA4.000e-1579.55RNA-binding protein PNO1-like protein n=1 Tax=Trib... [more]
B8C5R0_THAPS1.360e-1474.42KH domain-containing protein n=1 Tax=Thalassiosira... [more]
A0A6T5QRH5_HETAK1.370e-1477.27Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2D4BJV4_PYTIN1.450e-1479.07RNA-binding protein PNO1-like protein n=4 Tax=Pyth... [more]
A0A8J9S7D6_PHATR1.590e-1477.27Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig80695contigS-dermatodea_contig80695:512..643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue3.4e-14
Seed eggNOG ortholog2880.D8LD80
Preferred namePNO1
KEGG koko:K11884
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022607,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034471,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043248,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0051082,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.RNA binding
EggNOG OGsCOG1094@1,KOG3273@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03051
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925317.4479117-CDS-S-dermatodea_contig80695:511..6431622925317.4479117-CDS-S-dermatodea_contig80695:511..643Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80695 512..643 +
1694079850.9827523-CDS-S-dermatodea_contig80695:511..6431694079850.9827523-CDS-S-dermatodea_contig80695:511..643Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80695 512..643 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig80695.16251.1prot_S-dermatodea_contig80695.16251.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig80695 512..643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig80695.16251.1

>prot_S-dermatodea_contig80695.16251.1 ID=prot_S-dermatodea_contig80695.16251.1|Name=mRNA_S-dermatodea_contig80695.16251.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=44bp
SRAIGRIAGQGGKTRHAIENATRTRIIVAEQKVHILGSFGNIKV
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mRNA from alignment at S-dermatodea_contig80695:512..643+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig80695.16251.1 ID=mRNA_S-dermatodea_contig80695.16251.1|Name=mRNA_S-dermatodea_contig80695.16251.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at S-dermatodea_contig80695:512..643+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTCGTGCGATCGGGCGTATCGCCGGGCAAGGCGGAAAGACGAGACACGC
GATCGAGAACGCCACGCGAACGCGAATCATTGTGGCCGAGCAGAAGGTTC
ACATCCTTGGGTCCTTCGGTAACATCAAGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig80695:512..643+

>mRNA_S-dermatodea_contig80695.16251.1 ID=mRNA_S-dermatodea_contig80695.16251.1|Name=mRNA_S-dermatodea_contig80695.16251.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at S-dermatodea_contig80695:512..643+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTCGTGCGATCGGGCGTATCGCCGGGCAAGGCGGAAAGACGAGACACGC
GATCGAGAACGCCACGCGAACGCGAATCATTGTGGCCGAGCAGAAGGTTC
ACATCCTTGGGTCCTTCGGTAACATCAAGGTGAGTCGTGCGATCGGGCGT
ATCGCCGGGCAAGGCGGAAAGACGAGACACGCGATCGAGAACGCCACGCG
AACGCGAATCATTGTGGCCGAGCAGAAGGTTCACATCCTTGGGTCCTTCG
GTAACATCAAGGTG
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