mRNA_S-dermatodea_contig80580.16244.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig80580.16244.1
Unique NamemRNA_S-dermatodea_contig80580.16244.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig80580.16244.1 vs. uniprot
Match: D8LTB9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTB9_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.210e-16
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 AFSCILCCFETHLKAVAKTIAANFGFLYNAKGRAIFLV 114
            AFSCILCCFETHLK VAKTIAANFGFLYNAKGRA+FL+
Sbjct:   95 AFSCILCCFETHLKVVAKTIAANFGFLYNAKGRAVFLI 132
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BLAST of mRNA_S-dermatodea_contig80580.16244.1 vs. uniprot
Match: A0A836CFZ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFZ2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 6.940e-12
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 AFSCILCCFETHLKAVAKTIAANFGFLYNAKGRAIFLV 114
            AF+CILCCFETH+  +A   A+NFGFLYNAKGRA+FL+
Sbjct:   41 AFACILCCFETHISFIASLAASNFGFLYNAKGRALFLL 78
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BLAST of mRNA_S-dermatodea_contig80580.16244.1 vs. uniprot
Match: A0A482T2R9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T2R9_9ARCH)

HSP 1 Score: 63.2 bits (152), Expect = 3.860e-11
Identity = 25/37 (67.57%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    4 FSCILCCFETHLKAVAKTIAANFGFLYNAKGRAIFLV 114
            FSC+LCCFETHLK V+K IA NFGF+Y+AK R++F++
Sbjct:   27 FSCLLCCFETHLKQVSKIIAMNFGFMYSAKSRSLFMI 63
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BLAST of mRNA_S-dermatodea_contig80580.16244.1 vs. uniprot
Match: A0A7S2WC07_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WC07_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.140e-10
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    4 FSCILCCFETHLKAVAKTIAANFGFLYNAKGRAIFLVL 117
            F C++CCFETHLK V+  IA NFGF+YNAKGR IF++L
Sbjct:  132 FGCLVCCFETHLKQVSIIIADNFGFMYNAKGRFIFMIL 169
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BLAST of mRNA_S-dermatodea_contig80580.16244.1 vs. uniprot
Match: W7TT71_9STRA (Golgi apparatus membrane protein TVP15 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TT71_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.010e-9
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 AFSCILCCFETHLKAVAKTIAANFGFLYNAKGRAIFLV 114
            AFSC+LCCFE +L+ VAK IA NFGFLY+AK RA FL+
Sbjct:  124 AFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLI 161
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BLAST of mRNA_S-dermatodea_contig80580.16244.1 vs. uniprot
Match: A0A7S2MMX0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MMX0_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 5.290e-9
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    4 FSCILCCFETHLKAVAKTIAANFGFLYNAKGRAIFLVL 117
            F C+ CC+ETHLK V+  IA NFGFLYNAK R +F++L
Sbjct:  131 FGCLFCCYETHLKQVSVFIADNFGFLYNAKARCLFMML 168
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig80580.16244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LTB9_ECTSI1.210e-1692.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CFZ2_9STRA6.940e-1271.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482T2R9_9ARCH3.860e-1167.57Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2WC07_9STRA2.140e-1068.42Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7TT71_9STRA1.010e-971.05Golgi apparatus membrane protein TVP15 n=1 Tax=Nan... [more]
A0A7S2MMX0_9STRA5.290e-963.16Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig80580contigS-dermatodea_contig80580:120..239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue7.5e-13
Seed eggNOG ortholog2880.D8LTB9
EggNOG free text desc.COPI associated protein
EggNOG OGs28NJZ@1,2SB3I@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionGolgi apparatus membrane protein TVP15
Ec32 orthologEc-12_005990.1
Exons1
Model size120
Cds size120
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925316.9796915-CDS-S-dermatodea_contig80580:119..2391622925316.9796915-CDS-S-dermatodea_contig80580:119..239Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80580 120..239 -
1694079850.6794164-CDS-S-dermatodea_contig80580:119..2391694079850.6794164-CDS-S-dermatodea_contig80580:119..239Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80580 120..239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig80580.16244.1prot_S-dermatodea_contig80580.16244.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig80580 120..239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig80580.16244.1

>prot_S-dermatodea_contig80580.16244.1 ID=prot_S-dermatodea_contig80580.16244.1|Name=mRNA_S-dermatodea_contig80580.16244.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=40bp
AFSCILCCFETHLKAVAKTIAANFGFLYNAKGRAIFLVL*
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mRNA from alignment at S-dermatodea_contig80580:120..239-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig80580.16244.1 ID=mRNA_S-dermatodea_contig80580.16244.1|Name=mRNA_S-dermatodea_contig80580.16244.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=120bp|location=Sequence derived from alignment at S-dermatodea_contig80580:120..239- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTTTCTCGTGCATCCTGTGCTGCTTCGAGACGCATCTGAAGGCGGTGGC
GAAGACCATCGCGGCCAACTTCGGCTTCCTCTACAACGCCAAGGGACGGG
CGATATTCCTCGTCTTGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig80580:120..239-

>mRNA_S-dermatodea_contig80580.16244.1 ID=mRNA_S-dermatodea_contig80580.16244.1|Name=mRNA_S-dermatodea_contig80580.16244.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=240bp|location=Sequence derived from alignment at S-dermatodea_contig80580:120..239- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTTTCTCGTGCATCCTGTGCTGCTTCGAGACGCATCTGAAGGCGGTGGC
GAAGACCATCGCGGCCAACTTCGGCTTCCTCTACAACGCCAAGGGACGGG
CGATATTCCTCGTCTTGTGAGCTTTCTCGTGCATCCTGTGCTGCTTCGAG
ACGCATCTGAAGGCGGTGGCGAAGACCATCGCGGCCAACTTCGGCTTCCT
CTACAACGCCAAGGGACGGGCGATATTCCTCGTCTTGTGA
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