mRNA_S-dermatodea_contig8045.16228.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8045.16228.1
Unique NamemRNA_S-dermatodea_contig8045.16228.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8045.16228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8045contigS-dermatodea_contig8045:4250..4736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size489
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925315.8862484-CDS-S-dermatodea_contig8045:4249..45971622925315.8862484-CDS-S-dermatodea_contig8045:4249..4597Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8045 4250..4597 +
1694079849.9666388-CDS-S-dermatodea_contig8045:4249..45971694079849.9666388-CDS-S-dermatodea_contig8045:4249..4597Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8045 4250..4597 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925315.8962312-UTR-S-dermatodea_contig8045:4597..47361622925315.8962312-UTR-S-dermatodea_contig8045:4597..4736Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8045 4598..4736 +
1694079849.9768655-UTR-S-dermatodea_contig8045:4597..47361694079849.9768655-UTR-S-dermatodea_contig8045:4597..4736Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8045 4598..4736 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8045.16228.1prot_S-dermatodea_contig8045.16228.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8045 4250..4597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8045.16228.1

>prot_S-dermatodea_contig8045.16228.1 ID=prot_S-dermatodea_contig8045.16228.1|Name=mRNA_S-dermatodea_contig8045.16228.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=116bp
VCVFFFFFAKNRLTTSRKGRDGHTRKCTTAQAGYVRGPGLLSAKSLPSTS
RYVEEIRATDWASILLYLFDVEYVPGRCTPIKQAQHAPLRVMKEAFHAAG
VFMVGAGRGPATIRS*
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mRNA from alignment at S-dermatodea_contig8045:4250..4736+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8045.16228.1 ID=mRNA_S-dermatodea_contig8045.16228.1|Name=mRNA_S-dermatodea_contig8045.16228.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=487bp|location=Sequence derived from alignment at S-dermatodea_contig8045:4250..4736+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGTGTGTTTTTTTTTTTTTTTTTGCGAAAAATCGCCTCACTACGAGTAG
AAAAGGCCGTGACGGCCACACACGCAAGTGCACTACCGCGCAAGCAGGCT
ATGTACGCGGCCCAGGGTTACTATCTGCCAAATCACTTCCTTCTACCTCA
CGCTATGTCGAGGAGATAAGAGCCACCGATTGGGCATCCATACTACTGTA
CCTGTTCGATGTAGAATACGTTCCCGGCCGGTGCACCCCAATAAAACAAG
CTCAACACGCCCCGCTAAGGGTCATGAAAGAGGCATTCCATGCGGCAGGA
GTATTCATGGTTGGTGCGGGTAGAGGGCCGGCCACCATCCGCAGCTAGCT
ATTCTTATGGCCGCTTTGGAGGACAACGAGAAATGCGCATGCTGCTGTTT
TTTTTTTGTGTGGTGTGCTGAGAGAGCCGACTACACAGCCATGGAATTTT
TTGCTTGTCCGTTCGAGTTTCGAGGGGTTTGCAGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8045:4250..4736+

>mRNA_S-dermatodea_contig8045.16228.1 ID=mRNA_S-dermatodea_contig8045.16228.1|Name=mRNA_S-dermatodea_contig8045.16228.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at S-dermatodea_contig8045:4250..4736+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGTGTGTTTTTTTTTTTTTTTTTGCGAAAAATCGCCTCACTACGAGTAG
AAAAGGCCGTGACGGCCACACACGCAAGTGCACTACCGCGCAAGCAGGCT
ATGTACGCGGCCCAGGGTTACTATCTGCCAAATCACTTCCTTCTACCTCA
CGCTATGTCGAGGAGATAAGAGCCACCGATTGGGCATCCATACTACTGTA
CCTGTTCGATGTAGAATACGTTCCCGGCCGGTGCACCCCAATAAAACAAG
CTCAACACGCCCCGCTAAGGGTCATGAAAGAGGCATTCCATGCGGCAGGA
GTATTCATGGTTGGTGCGGGTAGAGGGCCGGCCACCATCCGCAGCTAGGT
GTGTGTTTTTTTTTTTTTTTTTGCGAAAAATCGCCTCACTACGAGTAGAA
AAGGCCGTGACGGCCACACACGCAAGTGCACTACCGCGCAAGCAGGCTAT
GTACGCGGCCCAGGGTTACTATCTGCCAAATCACTTCCTTCTACCTCACG
CTATGTCGAGGAGATAAGAGCCACCGATTGGGCATCCATACTACTGTACC
TGTTCGATGTAGAATACGTTCCCGGCCGGTGCACCCCAATAAAACAAGCT
CAACACGCCCCGCTAAGGGTCATGAAAGAGGCATTCCATGCGGCAGGAGT
ATTCATGGTTGGTGCGGGTAGAGGGCCGGCCACCATCCGCAGCTAG
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