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Homology
BLAST of mRNA_S-dermatodea_contig8037.16221.1 vs. uniprot
Match: A0A6H5KPC0_9PHAE (Zinc finger CCCH-type with G patch domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC0_9PHAE) HSP 1 Score: 226 bits (577), Expect = 9.280e-65 Identity = 141/293 (48.12%), Postives = 159/293 (54.27%), Query Frame = 2
Query: 377 ALRNQLATLEEQREQLASLLGDDPQEPLLQLQAELGATIDGI--RRSL---ENGQNSPSLGDANGE---------------------EPEF--VSGDTCLAPRVFDRRRARAVVEAVDAGNGTCLVTWVHPRHKREMACHYWKEVRNCKFSGPDCPFSHGVEVPLADLLPDQPGRKASSAGLPPGSGDGNTGASAGSPGRTSGSEGDNWLGSLGAGSRVLAQYHDRVWYEAAVDGPK-----------SDGLVAVRFKGFEDEGLVSVSADHSHLAPLDYGIDGAEDARGSGG 1138
AL QLA L QREQL +L+GDD PL+ LQ EL IDGI R SL + G+N EP F V G CLAPRVFDRRRARAVVE V++ GTCLVTWVHPR E+ C +WKE R+CKFSGPDCPFSHGVEVPL LLPD G G +WL SL +GSRVLA YHDRVWYEA +GP S L+AVRFKGFE +G VSV AD SHLAPL+ + A + G GG
Sbjct: 6 ALERQLADLRAQREQLVALVGDDSHSPLIPLQEELAVAIDGIIERLSLLREQAGENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPSFPIVVGALCLAPRVFDRRRARAVVEEVESSKGTCLVTWVHPRKHGEIVCRFWKEGRSCKFSGPDCPFSHGVEVPLLGLLPDD------------------------------GGGGSSWLASLRSGSRVLAFYHDRVWYEATAEGPARPAGAGAGAAASSMLLAVRFKGFEADGPVSVPADSSHLAPLEAAVT-APEIHGVGG 267
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1140 |
| Cds size | 804 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8037.16221.1 >prot_S-dermatodea_contig8037.16221.1 ID=prot_S-dermatodea_contig8037.16221.1|Name=mRNA_S-dermatodea_contig8037.16221.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=268bp
MEEHQGPADDMKTDALRNQLATLEEQREQLASLLGDDPQEPLLQLQAELG
ATIDGIRRSLENGQNSPSLGDANGEEPEFVSGDTCLAPRVFDRRRARAVV
EAVDAGNGTCLVTWVHPRHKREMACHYWKEVRNCKFSGPDCPFSHGVEVP
LADLLPDQPGRKASSAGLPPGSGDGNTGASAGSPGRTSGSEGDNWLGSLG
AGSRVLAQYHDRVWYEAAVDGPKSDGLVAVRFKGFEDEGLVSVSADHSHL
APLDYGIDGAEDARGSGG back to topmRNA from alignment at S-dermatodea_contig8037:2002..7297+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig8037.16221.1 ID=mRNA_S-dermatodea_contig8037.16221.1|Name=mRNA_S-dermatodea_contig8037.16221.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5296bp|location=Sequence derived from alignment at S-dermatodea_contig8037:2002..7297+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTCCTCGTCGCTCACGCTTTGCTTTGCTTTCACGTGCGGGCTGTGCTAG
GGCGCGCGTGATTGGTGTGCTCGGCGTCCCACGTGAGCGTTTCTCTGCGC
TGTTAGAGCAGTAGCTTTCAGCAGGAGCGAACGAGCTCGCTCTTATCACG
AAGCGACTATCGTACATAGGATATGTCGATGAAAACGCGTATACATACTT
GTAGTTGAACATAAACGCGAATATAATACTGGTTAGGTTGTGCCGCGATT
TTAGGAGAACAGAACAAGCGCAGCAGCAGCGACGCGGCCCATCATCAGAG
CCCACGTATAGAGCATAGACCACAGGTACCCAGCATGGAGGAACACCAGG
GCCCAGCTGATGACATGAAGACCGACGCTCTGAGAAATCAGCTGGCGACC
CTGGAGGAGCAGAGGGAGCAACTGGCCTCACTGCTCGGCGATGATCCCCA
GGAACCTCTGCTACAGCTGCAGGTACGATACTGCTGTATGCGTTCTCTAT
GATTTTCACGGATCCTGATGTGCCCGAATCAGCATGGATCATGGTGTTCG
GTTCATGTGAACATGCTGCAGCCGAGCGAGTGCCACGTGCCAAGACGCTC
TTAACACTGCTATGGCCCATTCTACTGCTGTATGGCTGCACGCATGCATG
ACATACGTTTTGTTTCTGTGCATACGCTCGACGGGTATGCACGTGTGCAC
AGCAGTTTAGCGCTGTTCGACAAGCAAAATAAACACGTTTTGAGTTTTTA
CAAGTGAATAAGTGTACAGTAACTTCTTCAGTGCTGTTATCATACTGTTG
TGTACTGCTGCTGTGTACTGCTGTCCGAGTTTCGCCGCTCGCTGGCTAAC
GAACGCCCTCTACAATCTACAGCAGTATCAGAAGTATCATAGCAGCTCTC
GCATACTATAGTTATGATGTCAACGGGTATCTACTCGCACACAACACAGC
AGTACAGTTGTTCAGGACAGCGAAGGTACTGTACTGGTATGATAAGATAG
GAGGTCAGTCTCACTCGAGATCACGCCGCAGTGTACGTAGGTGCCGTCAG
ATTTCGCTTATAATATTATATTCTAAATGCAACATGCTGCAATATGAGCT
GGAACATGGTATGCATACTGTAATAGTACAGGTATATACTGTAGGAACGT
TTTTGGTCCGTTGGTGCTTCCTCGTCTTGGTGTGCGTCGTTCTGTTGCGT
CGTTCTTCTATGTACATGTGTATCATACATATCATACAATACCATTCACA
AGAGTCTTATCATATACAGTACCTGGTACAGCACAGTACCGGCCCGCTCG
TAAGGAACTGAAAATCAGGCTCAGCCTGAGTTTCTCATATGCGGCGAACA
CTATTACATACCTGGTAGGGTTTAGTGTAGCACTTGGCGCACCCCTCATA
TCGTTTTCAAAAATCGCAGGCTGATTTTCTTACAGGCGCGCGTCTCTTAT
GAGCGGGCCGGTACTGTTTGTACACAGCAGTAGTGCATCATGTCTCATCT
TGTCTTCGATTCCTCGATTTATCATCTGACTCTACGAGCGGGATCGGCAA
CCATTGGCGGGCCGGTCGGTTGCACCTATCGTATTTTAAGCAAGTGTCAT
GACTACAATCAATAACAAATAAAAAGTAAATCAATCTATCAATTCAAGGT
TTGTGGAGACCTGCATCTTATTTTCTCGTACAGCACTATTTTCTTTTCTG
ACCGTATTTTTCCCTTCGTTCTTTTGCGCACCGCACCCCAACCACAAATC
GGGTCGGACTTGTTGTTGGCACACATGTTCCTATGATAGGATAGGCTTTC
TTTTCCGAGGTCCGTCTGTGGTCACAAGGGACCATCCCATCTCTCCCCGG
TTCTCACCTTTGATTTTTGTCGCGGATGCATTGGGTTCGGCACTCCCACA
GCTCGCCGATTTCTCGGATTTTTTCCTACTCACGCTCTCCCGGTTTCCGC
GGCGGAGGTAGAGAAACATGTAAATATTGCCTCTGCCGGGATTCGAAACC
GGGTCCTCCGCTTACTGGGCTGGTGGTCAACCAGTTCAACCAGTTCAACC
ACGGGGCGCCCTTAGCCTTGTGAAAATTGACCAAATCAATCAACTCTAAT
ACCAAGTATTCTATTTAGCGCCTGCGCGTTTGGTGTTTGCCGCTAACCAT
CACACGCAAGAAGTAGGAAGCGCATCGGGGAGGAAACCGCGAGAAGGACA
AATCGCAGGTCACAACAGCAGTACTTGTACACGTCTCGGGATCGATTGAT
TTATGTTGATATTTATTATCACACATACGGTCGACCGGTCCGCGAAATGA
TTGCCACGCGTCGTGGCCTGATAAGAGTATCATAGCGAGAAACCGAAAAA
CCAGCGGAAATCTTACACCAGCTGCTTGTGCGTTGGACAATCAAGGAATT
CAATGTGCCCTTTTCTCGTGCTATCCAAGTTTGCTCTGTCGCTTCCCTTG
GGGTGACCCCGAGGCACTCACTCGCTGCAACGCAAAGGGCCTTTGTTTTT
TTCGACTTGTCTCATGGGCACTGTGTTGTAAGCAAAGTCCGAGAAATCGG
TGAGCTGCGGGAGTGCCGAAACCAATGCGCGAAAATTAACAAAGTTGAGA
ACCGGGGGGGGGTGGGATGATCCCTTGTGTGACCACAGACGGACCTCGGA
AAGGCCGGTCTATCATACTAATATTAGCATGTTTGGGAGAAAAAAAAAAC
TCCTGTATTTCGATACTAAGAACAACTCGACAGTAGTACCGCCCGGCGAC
ATCGGCCGGTCAAATCGCAGCTTGACGCGGTAGTTCAAGCCAAGAAATGA
TATCGGCAGGCGCGGCTGGGTCCTCCGGTTCCTGGACTTGGCGAAGGCTG
TTGATACCCACGGCCAATCAACGTGCAAGTATAAGCAATGTATGCTCTGC
TGTTGAGCACTCAATTTCACGCCGTTCAGGTTATATATACAGCCTTCACG
ATGCCAACTCGATATTCTACTTTTGACCTCAAGGCTCAAATGTCTGAGCC
AAAAAAAAAACTAGCAACTCCCAAGCACGGACCGACCAGGACCAACCTGC
TTCCCCATCGGTTAGGAGTCAGGAGTACGGTACGGTTCGACGTCATCGGG
AAATAAACGGGGGAAAAACAAGTGTTGGGTTTCGGGTTTGAGGGCGCGAA
GAAGTCGACAAGTTCTTAGAACACAGGCCTCGGGGTGTATTTCCGGCACA
TTTCGGCCGTACCGTGTCTGCCAACTACTGTGGATCTGGTGGCGTAGGAG
GCTCTGGCGACGTGGCGCCCATATGTTTTGTTTGGGAAGAACACGAGCGG
CCTGATGTCATGCTATGAGTTCGTGTGGGTGCATGCACGTGTACAGTAGT
AGCGTATGTAAACGGTGTCAAACGGGGACTTCGCAACCGATCGATTGCAC
TTCCGTGTACTGGAAAACTTGTTGGTTGACACGCGCTTTTGCTTATGACT
TAGTGGGTAGCCACGGCCACCCCCGTGTGAGGTGTGCGTTGGCAGGACGA
TATGCCGACGGAACGCGACACGGAGGTCGAACGCGGTCGAGCTACTGCTG
TGCCTGTCGCTGCTGTGTTTTCGCTTTTATTAAAACAAAAATCGCTCCAC
ACAAACATCAAGTTGTTTGGCATCAGACAGCATCCATGTCTAAAATCGAT
ATACACAATCGGTCATTGGTGCATTAACATATCGTACGCACGGTACAAAT
ACATGCCACTACGCCGAGTACTGTAGCCGTAGAACCTGCCCTTCTCCTAA
CCGCCGGAAAAAACGAAGAAATTGTAATGGCTCCCATCTCACAATACACT
GACTGCGTACGTTGTCACTCTTTCGAGCAGGCGGAGCTGGGTGCTACGAT
CGACGGCATCCGCCGGAGTCTGGAAAACGGGCAAAACTCGCCTTCCCTTG
GCGACGCTAATGGCGAGGAGCCTGAGTTCGTATCGGGCGACACGTGCCTC
GCTCCCCGCGTTTTCGATCGGCGACGCGCGCGGGCGGTGGTGGAGGCGGT
GGACGCTGGCAACGGCACGTGTCTCGTTACCTGGGTGCATCCTCGGCATA
AACGGGAGATGGCCTGCCACTATTGGAAGGAGGTTAGGAGTGGGAATGGG
GGGAGGGAGCCGTTAGTTTCCCGTGTGTGTGTGTGTGGGGGGGGGTGCCG
TAGACGTAAAATTTCAGTGGCTGTCGATAGTAGGAGGCCGCCTTTGCCCT
TCGGGCGTGTCTCTTGGGCAGGGAACAACGGATGTTGCCCTTCCATGGCT
CAATCAAGCGCGAGTCGGATAGGTTTTTCGGAGACTCTAGGAGCAGCGTC
AGAAGTGCCGCAGGAAGGTTGCTTGCTTTCCGAACGCTTCTCTGGATTGC
GGGGGGGGGTCCTTGCGTCAGGGGCGCAATCGTTCCCACCTGTGCCATCC
ATCCGCCCACGAAGAACGCTTAAGAGCCGAAGGAATTTTCCGAAGTGTGC
ACACTTCCGGCCATCGACTGCCAAGAGGCCATCAGTAGTAAGTATTCTCC
CGCGATTAACACGCTGCAACACGCAATAGTCCTATCTTTGTAGAGTAGCG
CGAAACGGCTGGAGCTGTGCACGCATCTCTTTTTTCCACCGCACACACGC
CGGTATCTGTAACAACACCACACCCCACCACCCACCCCCCCCCCCCCAAC
CCCACCCACCCAACCACCCAAACNNNNNNNNNNCCGCGTTGAAACCCCTG
CAAAACCCAATAGGCCTATTTTTGTAGGGGGGCGCGAAACGGGGGGGGCT
GGGCCCGCATTTCTTTTTTCCCCCCCCCACACGCCGGTATCTGTCCCCCC
CCCCCCCCCCCCCTCCTCCCCCCGACCTTTGCCGTGCTCGCACCATTGCT
GTTGCACCGTTAAAATCTCTGCCGACGAGAAGGTGAGAAATTGTAAGTTT
TCCGGGCCGGACTGCCCGTTTTCCCACGGAGTTGAAGTTCCTTTAGCCGA
CCTGCTGCCCGACCAACCCGGCCGGAAGGCTTCCAGCGCGGGATTGCCTC
CGGGGTCGGGGGATGGCAACACAGGAGCTTCGGCGGGTTCGCCGGGAAGA
ACCAGCGGCAGCGAAGGAGACAACTGGCTGGGTAGCTTGGGTGCCGGCTC
TCGAGTGCTCGCGCAGTATCACGACCGGGTGTGGTACGAGGCGGCCGTGG
ACGGCCCCAAGTCTGACGGGCTTGTAGCGGTGCGCTTCAAGGGTTTCGAA
GACGAAGGCTTGGTGTCCGTTTCAGCCGACCATTCACACCTGGCGCCGCT
CGACTACGGCATCGACGGGGCAGAGGACGCTCGCGGCAGTGGCGGC back to topCoding sequence (CDS) from alignment at S-dermatodea_contig8037:2002..7297+ >mRNA_S-dermatodea_contig8037.16221.1 ID=mRNA_S-dermatodea_contig8037.16221.1|Name=mRNA_S-dermatodea_contig8037.16221.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1608bp|location=Sequence derived from alignment at S-dermatodea_contig8037:2002..7297+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGGAACACCAGGGCCCAGCTGATGACATGAAGACCGACGCTCTGAG
AAATCAGCTGGCGACCCTGGAGGAGCAGAGGGAGCAACTGGCCTCACTGC
TCGGCGATGATCCCCAGGAACCTCTGCTACAGCTGCAGATGGAGGAACAC
CAGGGCCCAGCTGATGACATGAAGACCGACGCTCTGAGAAATCAGCTGGC
GACCCTGGAGGAGCAGAGGGAGCAACTGGCCTCACTGCTCGGCGATGATC
CCCAGGAACCTCTGCTACAGCTGCAGGCGGAGCTGGGTGCTACGATCGAC
GGCATCCGCCGGAGTCTGGAAAACGGGCAAAACTCGCCTTCCCTTGGCGA
CGCTAATGGCGAGGAGCCTGAGTTCGTATCGGGCGACACGTGCCTCGCTC
CCCGCGTTTTCGATCGGCGACGCGCGCGGGCGGTGGTGGAGGCGGTGGAC
GCTGGCAACGGCACGTGTCTCGTTACCTGGGTGCATCCTCGGCATAAACG
GGAGATGGCCTGCCACTATTGGAAGGAGGCGGAGCTGGGTGCTACGATCG
ACGGCATCCGCCGGAGTCTGGAAAACGGGCAAAACTCGCCTTCCCTTGGC
GACGCTAATGGCGAGGAGCCTGAGTTCGTATCGGGCGACACGTGCCTCGC
TCCCCGCGTTTTCGATCGGCGACGCGCGCGGGCGGTGGTGGAGGCGGTGG
ACGCTGGCAACGGCACGTGTCTCGTTACCTGGGTGCATCCTCGGCATAAA
CGGGAGATGGCCTGCCACTATTGGAAGGAGGTGAGAAATTGTAAGTTTTC
CGGGCCGGACTGCCCGTTTTCCCACGGAGTTGAAGTTCCTTTAGCCGACC
TGCTGCCCGACCAACCCGGCCGGAAGGCTTCCAGCGCGGGATTGCCTCCG
GGGTCGGGGGATGGCAACACAGGAGCTTCGGCGGGTTCGCCGGGAAGAAC
CAGCGGCAGCGAAGGAGACAACTGGCTGGGTAGCTTGGGTGCCGGCTCTC
GAGTGCTCGCGCAGTATCACGACCGGGTGTGGTACGAGGCGGCCGTGGAC
GGCCCCAAGTCTGACGGGCTTGTAGCGGTGCGCTTCAAGGGTTTCGAAGA
CGAAGGCTTGGTGTCCGTTTCAGCCGACCATTCACACCTGGCGCCGCTCG
ACTACGGCATCGACGGGGCAGAGGACGCTCGCGGCAGTGGCGGCGTGAGA
AATTGTAAGTTTTCCGGGCCGGACTGCCCGTTTTCCCACGGAGTTGAAGT
TCCTTTAGCCGACCTGCTGCCCGACCAACCCGGCCGGAAGGCTTCCAGCG
CGGGATTGCCTCCGGGGTCGGGGGATGGCAACACAGGAGCTTCGGCGGGT
TCGCCGGGAAGAACCAGCGGCAGCGAAGGAGACAACTGGCTGGGTAGCTT
GGGTGCCGGCTCTCGAGTGCTCGCGCAGTATCACGACCGGGTGTGGTACG
AGGCGGCCGTGGACGGCCCCAAGTCTGACGGGCTTGTAGCGGTGCGCTTC
AAGGGTTTCGAAGACGAAGGCTTGGTGTCCGTTTCAGCCGACCATTCACA
CCTGGCGCCGCTCGACTACGGCATCGACGGGGCAGAGGACGCTCGCGGCA
GTGGCGGC back to top
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