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Homology
BLAST of mRNA_S-dermatodea_contig8035.16220.1 vs. uniprot
Match: D8LUB2_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUB2_ECTSI) HSP 1 Score: 149 bits (375), Expect = 8.590e-34 Identity = 182/504 (36.11%), Postives = 229/504 (45.44%), Query Frame = 1
Query: 274 SAGLAGASLLQLASAAVGDFAAP-------RAAQTPPER-------TWPKDKLSKDSWDPAPASNATPEDEHDGLRPGTEDFGADPPRRRASYAAPSLSSEALSLNAALETSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVPLPL-PSLESLLENAPRSHLKRQRD-GIA--EPYDMDVDQQPXXXXXXXXXXXXPAALEGGGLARPVFRGDEMPGVTENGGDDGAGKTPHQGADCDGSRDTSSSSGAAASGQHRPFAGAKRLFSGPGG------------GQRWGAGEQVWKNTSAP---TTGYVTSRLKPDWRSPGLASVGRAASFDEAREATDRQGLGAGNDGKPRRASAFVTHGSALSPVVTEMGRRDSAIEPRKAPV---RRHHFHDLLSAQTPFRSVTAYGAGAGIDRSRSLAHIPGNPDARIEEGREMDLHDRQAPASGGIPSWNAPAGGEWIPSGSGARGAGAQDSRPSGLTSNLSRKTQFHVMPATAAY 1677
S GLAGASLLQLA A ++P AA +PP W + PA A P ++ A+P RRAS+ AP+++ + L+T ++P PL PS++SLL++ P LKRQRD G A +PYD XXXXXXXXXXXXP + G ARP G V+ + + G+ +G + RD SS + AS Q R LFSGP G+R +VW +P TTGYVTS +WR G+A++GRAASFDEAR A + G+ + + KPRRASAFVTHGSAL P V EM RRDSA E R P R H+ DLLSA RSVTA+ G S +LAH PDA IEE +A A G PSG G RP + + + FHVMPATA +
Sbjct: 146 SVGLAGASLLQLAGGAESSASSPAPTGTGQNAANSPPPEGATAGGGPWISGNQMRGGGLPAGADEQQPPAS---VQQKHAPAAAEPRTRRASFNAPAVAPIIQPVLPDLKTQHTRRS----------------------------SMPAPLLPSVQSLLDDIPHGGLKRQRDEGRARQQPYDTXXXXXXXXXXXXXXXXXXPPE-DAAGFARP---GPAHVAVSGSAAEKRGGR---EGRVDESGRDASSVAADGASAQARTPKKTTSLFSGPAXXXXXXXXXXXXDGER-ATRRKVWNPHQSPPSSTTGYVTSSPAMNWRRDGVATLGRAASFDEARLAERKSGMQSEDSSKPRRASAFVTHGSALPPRVIEMHRRDSAYETRTVPAGAGRVAHYSDLLSANASSRSVTAFNGRPGYSPSLTLAH----PDAVIEE---------EAVAGAAAAGQREDGAGAGAPSGGG---------RPP-MPGSRAAARMFHVMPATAVF 587
BLAST of mRNA_S-dermatodea_contig8035.16220.1 vs. uniprot
Match: A0A6H5JV53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV53_9PHAE) HSP 1 Score: 145 bits (365), Expect = 2.000e-32 Identity = 149/357 (41.74%), Postives = 176/357 (49.30%), Query Frame = 1
Query: 682 LPSLESLLENAPRSHLKRQR-DGIA--EPYDMDVDQQPXXXXXXXXXXXXPAALEGGGLARP--VFRGDEMPGVTENGGDDGAGKTPHQGADCDGSRDTSSSSGAAASGQHRPFAGAKRLFSGPGG--------------GQRWGAGEQVWKNTSAP---TTGYVTSRLKPDWRSPGLASVGRAASFDEAREATDRQGLGAGNDGKPRRASAFVTHGSALSPVVTEMGRRDSAIEPRKAPV---RRHHFHDLLSAQTPFRSVTAYGAGAGIDRSRSLAHIPGNPDARIEEGREMDLHDRQAPASGGIPSWNAPAGGEWIPSGSGARGAGAQDSRPSGLTSNLSRKTQFHVMPATAAY 1677
LPS++SLL++ PR LKRQR +G A +PYD D D XXXXXXXXXX P + G ARP PG + GG +G G D G RD SS + AS Q R LFSGP G+R +VW +P TTGYVTS +WR G+A++GR ASFDEAR + G+ + + KPRRASAFV HGSAL P V EM RRDSA E R P R H+ DLLSA RSVTA+ G S LA PDA IEE E A S AP+GG RP S L+ + FHVMPATA +
Sbjct: 292 LPSVQSLLDDIPRGGLKRQRNEGRARQQPYDTDADSATSXXXXXXXXXXGPPE-DTAGFARPGPAHVAASGPGAEKGGGREG-------GVDESG-RDPSSVAADGASAQARTPNKTSSLFSGPVAAXXXXXXXXXQQQDGER-ATRRKVWNPHQSPPSITTGYVTSSPAMNWRRDGVATLGRVASFDEARMVAIKSGMQSEDSSKPRRASAFVAHGSALPPRVIEMHRRDSAYETRTVPGGAGREPHYSDLLSANASSRSVTAFNGCPGYSPSLMLAQ----PDAVIEE--EAAAGXXXAGQSEDGVGAGAPSGGR----------------RPPVPGSRLAAR-MFHVMPATAVF 615
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1950 |
| Cds size | 1950 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8035.16220.1 >prot_S-dermatodea_contig8035.16220.1 ID=prot_S-dermatodea_contig8035.16220.1|Name=mRNA_S-dermatodea_contig8035.16220.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=650bp
PLIASQGQRSQFCSAHKQEGQVDVCNRRCQHPGCSKRPCFGLRGQRPCFC GSHRTPQMVDVISHKCGYPGCSHPTGYEANRVRSKFCEKHKSAGLAGASL LQLASAAVGDFAAPRAAQTPPERTWPKDKLSKDSWDPAPASNATPEDEHD GLRPGTEDFGADPPRRRASYAAPSLSSEALSLNAALETSSPRRRASYAAP SVSGPGSPLTKAVLAAVPQRRSTVPLPLPSLESLLENAPRSHLKRQRDGI AEPYDMDVDQQPPPPSSTSALAAAPAALEGGGLARPVFRGDEMPGVTENG GDDGAGKTPHQGADCDGSRDTSSSSGAAASGQHRPFAGAKRLFSGPGGGQ RWGAGEQVWKNTSAPTTGYVTSRLKPDWRSPGLASVGRAASFDEAREATD RQGLGAGNDGKPRRASAFVTHGSALSPVVTEMGRRDSAIEPRKAPVRRHH FHDLLSAQTPFRSVTAYGAGAGIDRSRSLAHIPGNPDARIEEGREMDLHD RQAPASGGIPSWNAPAGGEWIPSGSGARGAGAQDSRPSGLTSNLSRKTQF HVMPATAAYLTLGSQPPQDESSSAGVGASAGAESDAPAAGDQQQRRWSVR DTAPVLSDQDSRQFVPAWGASMEEAKAAEEDGGARDNVGAAVGSGMGPSR back to topmRNA from alignment at S-dermatodea_contig8035:6614..9128- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig8035.16220.1 ID=mRNA_S-dermatodea_contig8035.16220.1|Name=mRNA_S-dermatodea_contig8035.16220.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2515bp|location=Sequence derived from alignment at S-dermatodea_contig8035:6614..9128- (Saccorhiza dermatodea SderLu1190fm monoicous) CCCCTCATTGCCTCGCAGGGACAAAGGTCGCAGTTCTGCAGCGCTCACAA
GCAGGAGGGGCAGGTGGACGTGTGCAACAGACGCTGCCAGCACCCCGGGT
GCTCGAAGCGCCCATGCTTCGGCCTACGCGGGCAGCGGCCTTGCTTCTGC
GGGTCCCACCGGACGCCGCAGATGGTGGACGTCATCAGCCACAAGTGCGG
CTACCCTGGCTGCAGCCATCCTACAGGCTACGAGGCCAATCGAGTACGGT
CCAAGTTCTGCGGTGAGCAAAGCACACAAATTGTAGATCGTGTGTCGCAT
TTTTGACTTGTTTTTCTCGTGTGCCTCTTGGGCCGTAGGTGAGGTATGTA
CGTAAATAGTGTTGTGTATGGTGCCAGGTATTGTCGTGCTGTATGCTGGT
ACATGCCTCCAGTGACTGCGCGGTTCGACGAGCCCTGGGCATGTCGGTGG
GGTGACGTTTCTTCGGAATGGACGGGGCGATCCCGGCCCGCTAACTTTCC
GCTCGAATTGGTACGAGCAGGAAGGATATCCAAGGTGAAGGGAAGAGGCG
TGATGCCGCCCCTCGTATCGGCCCCGAGCCGTCCGTCACAGCCGCGTGTG
CCCCGCCGTTCAGCCCTTTATTTGCTCGGTGGTTGGGTTGACCGCCGAGA
CCATCCGCTTTCCGCGCGCCCTTCCCTCGCTCCCCTGCCATCGACCGTGC
ACAACAGAAAAGCACAAGTCGGCGGGACTGGCCGGCGCATCGCTTCTCCA
ACTCGCCAGCGCTGCCGTCGGAGACTTCGCCGCCCCGCGCGCTGCGCAGA
CCCCGCCGGAGCGGACATGGCCAAAGGACAAGCTCTCGAAAGACTCTTGG
GATCCCGCTCCGGCATCCAACGCTACGCCCGAGGACGAGCACGACGGCTT
GCGGCCCGGGACGGAGGATTTCGGCGCGGACCCCCCCCGGCGTCGAGCGA
GCTATGCGGCGCCGTCACTCTCGAGCGAGGCGCTCTCTCTCAACGCCGCG
CTAGAGACCAGCTCCCCGCGGCGCCGCGCGAGCTACGCCGCGCCCTCTGT
CTCCGGGCCGGGTTCGCCCCTCACCAAGGCGGTGCTGGCGGCGGTTCCGC
AGCGGAGGTCCACGGTGCCCTTGCCGTTGCCGTCGCTGGAGTCCCTCCTC
GAGAACGCCCCTCGGAGCCACCTGAAGCGCCAGCGCGATGGAATCGCCGA
GCCGTACGACATGGACGTGGACCAGCAACCACCGCCCCCGTCATCGACGT
CGGCTTTGGCGGCGGCCCCGGCGGCCCTGGAAGGGGGCGGTCTTGCCCGC
CCCGTGTTCCGTGGCGACGAGATGCCCGGTGTGACGGAGAATGGCGGCGA
CGATGGTGCAGGGAAGACTCCCCATCAGGGGGCTGACTGCGACGGGAGTC
GCGATACTTCCTCGTCCTCGGGTGCCGCTGCGTCCGGGCAGCACCGACCG
TTCGCTGGGGCCAAGAGACTATTTTCTGGCCCGGGGGGGGGGCAGAGGTG
GGGGGCCGGTGAACAGGTTTGGAAGAACACCTCGGCACCGACCACGGGGT
ACGTGACTTCGCGTCTCAAGCCGGACTGGAGATCGCCTGGGCTGGCCTCG
GTGGGGAGGGCCGCGTCGTTCGACGAAGCGAGGGAGGCGACGGACAGGCA
GGGGCTGGGCGCCGGGAATGACGGAAAGCCGCGCCGCGCCTCGGCCTTTG
TTACCCACGGCAGCGCGCTCTCCCCCGTGGTGACGGAGATGGGAAGGAGA
GACTCGGCGATCGAACCACGCAAGGCGCCGGTCCGCAGGCACCACTTCCA
TGACCTCCTGTCGGCACAAACCCCCTTCCGCTCCGTTACCGCCTACGGCG
CCGGCGCCGGCATCGATCGCTCCCGGTCGCTGGCGCATATCCCAGGGAAC
CCGGACGCTAGAATTGAGGAGGGGCGGGAGATGGATCTGCACGACCGGCA
AGCGCCCGCCTCCGGTGGCATCCCGTCGTGGAACGCGCCGGCGGGTGGCG
AGTGGATCCCGTCGGGCTCCGGGGCGCGCGGTGCGGGAGCGCAGGACAGC
AGGCCCTCGGGGCTAACCTCGAATCTCTCCCGTAAGACGCAGTTTCACGT
CATGCCGGCAACCGCTGCGTATTTGACCCTGGGGTCGCAGCCGCCGCAGG
ACGAGTCTAGCTCTGTGGCGCAGACACTACCCCCGAGGTTTAGCTGGCAC
CGCGAGCGCTCCGCCCAGCCGCAGGAAAACACGTGGAGGCAGGCGCCGGC
AGAGCGAGAAGCTCCTTCTTCGTTGCGTTCGGAGGCTGGGGTCGGGGCAA
GTGCCGGGGCCGAATCGGATGCGCCCGCGGCCGGAGACCAGCAGCAGCGG
CGCTGGTCTGTGCGGGATACGGCGCCCGTGCTGTCGGATCAGGATAGCAG
GCAGTTCGTGCCGGCCTGGGGTGCGTCGATGGAAGAAGCGAAAGCCGCGG
AGGAGGACGGTGGTGCTCGAGACAACGTGGGTGCGGCGGTCGGCTCGGGA
ATGGGGCCTAGCCGA back to topCoding sequence (CDS) from alignment at S-dermatodea_contig8035:6614..9128- >mRNA_S-dermatodea_contig8035.16220.1 ID=mRNA_S-dermatodea_contig8035.16220.1|Name=mRNA_S-dermatodea_contig8035.16220.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3900bp|location=Sequence derived from alignment at S-dermatodea_contig8035:6614..9128- (Saccorhiza dermatodea SderLu1190fm monoicous) CCCCTCATTGCCTCGCAGGGACAAAGGTCGCAGTTCTGCAGCGCTCACAA GCAGGAGGGGCAGGTGGACGTGTGCAACAGACGCTGCCAGCACCCCGGGT GCTCGAAGCGCCCATGCTTCGGCCTACGCGGGCAGCGGCCTTGCTTCTGC GGGTCCCACCGGACGCCGCAGATGGTGGACGTCATCAGCCACAAGTGCGG CTACCCTGGCTGCAGCCATCCTACAGGCTACGAGGCCAATCGAGTACGGT CCAAGTTCTGCGCCCCTCATTGCCTCGCAGGGACAAAGGTCGCAGTTCTG CAGCGCTCACAAGCAGGAGGGGCAGGTGGACGTGTGCAACAGACGCTGCC AGCACCCCGGGTGCTCGAAGCGCCCATGCTTCGGCCTACGCGGGCAGCGG CCTTGCTTCTGCGGGTCCCACCGGACGCCGCAGATGGTGGACGTCATCAG CCACAAGTGCGGCTACCCTGGCTGCAGCCATCCTACAGGCTACGAGGCCA ATCGAGTACGGTCCAAGTTCTGCGAAAAGCACAAGTCGGCGGGACTGGCC GGCGCATCGCTTCTCCAACTCGCCAGCGCTGCCGTCGGAGACTTCGCCGC CCCGCGCGCTGCGCAGACCCCGCCGGAGCGGACATGGCCAAAGGACAAGC TCTCGAAAGACTCTTGGGATCCCGCTCCGGCATCCAACGCTACGCCCGAG GACGAGCACGACGGCTTGCGGCCCGGGACGGAGGATTTCGGCGCGGACCC CCCCCGGCGTCGAGCGAGCTATGCGGCGCCGTCACTCTCGAGCGAGGCGC TCTCTCTCAACGCCGCGCTAGAGACCAGCTCCCCGCGGCGCCGCGCGAGC TACGCCGCGCCCTCTGTCTCCGGGCCGGGTTCGCCCCTCACCAAGGCGGT GCTGGCGGCGGTTCCGCAGCGGAGGTCCACGGTGCCCTTGCCGTTGCCGT CGCTGGAGTCCCTCCTCGAGAACGCCCCTCGGAGCCACCTGAAGCGCCAG CGCGATGGAATCGCCGAGCCGTACGACATGGACGTGGACCAGCAACCACC GCCCCCGTCATCGACGTCGGCTTTGGCGGCGGCCCCGGCGGCCCTGGAAG GGGGCGGTCTTGCCCGCCCCGTGTTCCGTGGCGACGAGATGCCCGGTGTG ACGGAGAATGGCGGCGACGATGGTGCAGGGAAGACTCCCCATCAGGGGGC TGACTGCGACGGGAGTCGCGATACTTCCTCGTCCTCGGGTGCCGCTGCGT CCGGGCAGCACCGACCGTTCGCTGGGGCCAAGAGACTATTTTCTGGCCCG GGGGGGGGGCAGAGGTGGGGGGCCGGTGAACAGGTTTGGAAGAACACCTC GGCACCGACCACGGGGTACGTGACTTCGCGTCTCAAGCCGGACTGGAGAT CGCCTGGGCTGGCCTCGGTGGGGAGGGCCGCGTCGTTCGACGAAGCGAGG GAGGCGACGGACAGGCAGGGGCTGGGCGCCGGGAATGACGGAAAGCCGCG CCGCGCCTCGGCCTTTGTTACCCACGGCAGCGCGCTCTCCCCCGTGGTGA CGGAGATGGGAAGGAGAGACTCGGCGATCGAACCACGCAAGGCGCCGGTC CGCAGGCACCACTTCCATGACCTCCTGTCGGCACAAACCCCCTTCCGCTC CGTTACCGCCTACGGCGCCGGCGCCGGCATCGATCGCTCCCGGTCGCTGG CGCATATCCCAGGGAACCCGGACGCTAGAATTGAGGAGGGGCGGGAGATG GATCTGCACGACCGGCAAGCGCCCGCCTCCGGTGGCATCCCGTCGTGGAA CGCGCCGGCGGGTGGCGAGTGGATCCCGTCGGGCTCCGGGGCGCGCGGTG CGGGAGCGCAGGACAGCAGGCCCTCGGGGCTAACCTCGAATCTCTCCCGT AAGACGCAGTTTCACGTCATGCCGGCAACCGCTGCGTATTTGACCCTGGG GTCGCAGCCGCCGCAGGACGAGTCTAGCTCTAAAAGCACAAGTCGGCGGG ACTGGCCGGCGCATCGCTTCTCCAACTCGCCAGCGCTGCCGTCGGAGACT TCGCCGCCCCGCGCGCTGCGCAGACCCCGCCGGAGCGGACATGGCCAAAG GACAAGCTCTCGAAAGACTCTTGGGATCCCGCTCCGGCATCCAACGCTAC GCCCGAGGACGAGCACGACGGCTTGCGGCCCGGGACGGAGGATTTCGGCG CGGACCCCCCCCGGCGTCGAGCGAGCTATGCGGCGCCGTCACTCTCGAGC GAGGCGCTCTCTCTCAACGCCGCGCTAGAGACCAGCTCCCCGCGGCGCCG CGCGAGCTACGCCGCGCCCTCTGTCTCCGGGCCGGGTTCGCCCCTCACCA AGGCGGTGCTGGCGGCGGTTCCGCAGCGGAGGTCCACGGTGCCCTTGCCG TTGCCGTCGCTGGAGTCCCTCCTCGAGAACGCCCCTCGGAGCCACCTGAA GCGCCAGCGCGATGGAATCGCCGAGCCGTACGACATGGACGTGGACCAGC AACCACCGCCCCCGTCATCGACGTCGGCTTTGGCGGCGGCCCCGGCGGCC CTGGAAGGGGGCGGTCTTGCCCGCCCCGTGTTCCGTGGCGACGAGATGCC CGGTGTGACGGAGAATGGCGGCGACGATGGTGCAGGGAAGACTCCCCATC AGGGGGCTGACTGCGACGGGAGTCGCGATACTTCCTCGTCCTCGGGTGCC GCTGCGTCCGGGCAGCACCGACCGTTCGCTGGGGCCAAGAGACTATTTTC TGGCCCGGGGGGGGGGCAGAGGTGGGGGGCCGGTGAACAGGTTTGGAAGA ACACCTCGGCACCGACCACGGGGTACGTGACTTCGCGTCTCAAGCCGGAC TGGAGATCGCCTGGGCTGGCCTCGGTGGGGAGGGCCGCGTCGTTCGACGA AGCGAGGGAGGCGACGGACAGGCAGGGGCTGGGCGCCGGGAATGACGGAA AGCCGCGCCGCGCCTCGGCCTTTGTTACCCACGGCAGCGCGCTCTCCCCC GTGGTGACGGAGATGGGAAGGAGAGACTCGGCGATCGAACCACGCAAGGC GCCGGTCCGCAGGCACCACTTCCATGACCTCCTGTCGGCACAAACCCCCT TCCGCTCCGTTACCGCCTACGGCGCCGGCGCCGGCATCGATCGCTCCCGG TCGCTGGCGCATATCCCAGGGAACCCGGACGCTAGAATTGAGGAGGGGCG GGAGATGGATCTGCACGACCGGCAAGCGCCCGCCTCCGGTGGCATCCCGT CGTGGAACGCGCCGGCGGGTGGCGAGTGGATCCCGTCGGGCTCCGGGGCG CGCGGTGCGGGAGCGCAGGACAGCAGGCCCTCGGGGCTAACCTCGAATCT CTCCCGTAAGACGCAGTTTCACGTCATGCCGGCAACCGCTGCGTATTTGA CCCTGGGGTCGCAGCCGCCGCAGGACGAGTCTAGCTCTGCTGGGGTCGGG GCAAGTGCCGGGGCCGAATCGGATGCGCCCGCGGCCGGAGACCAGCAGCA GCGGCGCTGGTCTGTGCGGGATACGGCGCCCGTGCTGTCGGATCAGGATA GCAGGCAGTTCGTGCCGGCCTGGGGTGCGTCGATGGAAGAAGCGAAAGCC GCGGAGGAGGACGGTGGTGCTCGAGACAACGTGGGTGCGGCGGTCGGCTC GGGAATGGGGCCTAGCCGAGCTGGGGTCGGGGCAAGTGCCGGGGCCGAAT CGGATGCGCCCGCGGCCGGAGACCAGCAGCAGCGGCGCTGGTCTGTGCGG GATACGGCGCCCGTGCTGTCGGATCAGGATAGCAGGCAGTTCGTGCCGGC CTGGGGTGCGTCGATGGAAGAAGCGAAAGCCGCGGAGGAGGACGGTGGTG CTCGAGACAACGTGGGTGCGGCGGTCGGCTCGGGAATGGGGCCTAGCCGA back to top
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