mRNA_S-dermatodea_contig80204.16204.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig80204.16204.1
Unique NamemRNA_S-dermatodea_contig80204.16204.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig80204.16204.1 vs. uniprot
Match: D8LB19_ECTSI (Similar to RING finger protein 122 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB19_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.080e-48
Identity = 100/158 (63.29%), Postives = 120/158 (75.95%), Query Frame = 1 
Query:    1 DDQAAALRLAHQEQDIQAREDELLAMRLAALEEAGVERRALRRRLHRRSRQSSSTRVVLD---------PATAAAVAMGGEVSEAVRALQFQDIDENDFETLLALDEGGGEGGRCCGGGRGLTETAMEAVLRSGKATGVTLQENCAICMADFEEGEEV 447
            +D+AAA R A QEQ+ QAREDELLA+RLAA EEAG ERRA RRR+ RRS  SS+ R  +          PA A+A   GG +S+AVRALQFQDIDENDFETLLALDE GGEGGRCC GG+GL + AMEAVL++GKA G  L+E+CA+CM +F  G+E+
Sbjct:  774 EDEAAARRFAKQEQEAQAREDELLALRLAAREEAGAERRASRRRVQRRSNASSARRNSIPGYISPDSNHPAVASAA--GGNLSDAVRALQFQDIDENDFETLLALDEAGGEGGRCCAGGKGLADEAMEAVLQTGKAAGARLEESCAVCMEEFGLGDEI 929
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BLAST of mRNA_S-dermatodea_contig80204.16204.1 vs. uniprot
Match: A0A6H5L8B3_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8B3_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 4.750e-28
Identity = 54/77 (70.13%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:  217 VSEAVRALQFQDIDENDFETLLALDEGGGEGGRCCGGGRGLTETAMEAVLRSGKATGVTLQENCAICMADFEEGEEV 447
            VS+A+RALQFQDIDENDFETLLALDE GGEGGRCC GG+GL E AMEA L++G A G  L+E+CA+CM +F  G+E+
Sbjct:  856 VSDAIRALQFQDIDENDFETLLALDEAGGEGGRCCAGGKGLAEEAMEAALQAGTAAGARLEESCAVCMEEFGLGDEI 932
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig80204.16204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB19_ECTSI1.080e-4863.29Similar to RING finger protein 122 n=1 Tax=Ectocar... [more]
A0A6H5L8B3_9PHAE4.750e-2870.13RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig80204contigS-dermatodea_contig80204:230..685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.3
Seed ortholog evalue7e-43
Seed eggNOG ortholog2880.D8LB19
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-27_005580.1
Exons1
Model size456
Cds size456
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925314.5107238-CDS-S-dermatodea_contig80204:229..6851622925314.5107238-CDS-S-dermatodea_contig80204:229..685Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80204 230..685 +
1694079849.1347914-CDS-S-dermatodea_contig80204:229..6851694079849.1347914-CDS-S-dermatodea_contig80204:229..685Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80204 230..685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig80204.16204.1prot_S-dermatodea_contig80204.16204.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig80204 230..685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig80204.16204.1

>prot_S-dermatodea_contig80204.16204.1 ID=prot_S-dermatodea_contig80204.16204.1|Name=mRNA_S-dermatodea_contig80204.16204.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=152bp
DDQAAALRLAHQEQDIQAREDELLAMRLAALEEAGVERRALRRRLHRRSR
QSSSTRVVLDPATAAAVAMGGEVSEAVRALQFQDIDENDFETLLALDEGG
GEGGRCCGGGRGLTETAMEAVLRSGKATGVTLQENCAICMADFEEGEEVC
L*
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mRNA from alignment at S-dermatodea_contig80204:230..685+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig80204.16204.1 ID=mRNA_S-dermatodea_contig80204.16204.1|Name=mRNA_S-dermatodea_contig80204.16204.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=456bp|location=Sequence derived from alignment at S-dermatodea_contig80204:230..685+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGACCAGGCTGCTGCGTTGCGACTAGCGCACCAGGAGCAAGATATCCA
GGCGAGAGAGGACGAGCTTCTAGCCATGCGCTTAGCCGCTCTGGAGGAAG
CCGGCGTCGAACGCCGAGCGCTCCGCCGCCGCTTGCACCGCCGGAGCCGC
CAGAGCTCCTCGACCCGGGTTGTGCTCGACCCCGCTACCGCCGCCGCAGT
CGCCATGGGCGGCGAGGTAAGTGAGGCCGTTCGCGCTCTGCAGTTCCAGG
ACATAGATGAGAACGACTTCGAGACATTGTTGGCTTTGGACGAGGGGGGG
GGCGAGGGGGGCAGGTGTTGCGGTGGTGGGCGAGGGTTGACCGAGACGGC
CATGGAGGCTGTGCTTCGGTCGGGCAAGGCGACGGGGGTTACTCTGCAGG
AGAACTGCGCGATCTGCATGGCGGACTTCGAGGAGGGCGAAGAGGTGTGT
CTTTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig80204:230..685+

>mRNA_S-dermatodea_contig80204.16204.1 ID=mRNA_S-dermatodea_contig80204.16204.1|Name=mRNA_S-dermatodea_contig80204.16204.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at S-dermatodea_contig80204:230..685+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGACCAGGCTGCTGCGTTGCGACTAGCGCACCAGGAGCAAGATATCCA
GGCGAGAGAGGACGAGCTTCTAGCCATGCGCTTAGCCGCTCTGGAGGAAG
CCGGCGTCGAACGCCGAGCGCTCCGCCGCCGCTTGCACCGCCGGAGCCGC
CAGAGCTCCTCGACCCGGGTTGTGCTCGACCCCGCTACCGCCGCCGCAGT
CGCCATGGGCGGCGAGGTAAGTGAGGCCGTTCGCGCTCTGCAGTTCCAGG
ACATAGATGAGAACGACTTCGAGACATTGTTGGCTTTGGACGAGGGGGGG
GGCGAGGGGGGCAGGTGTTGCGGTGGTGGGCGAGGGTTGACCGAGACGGC
CATGGAGGCTGTGCTTCGGTCGGGCAAGGCGACGGGGGTTACTCTGCAGG
AGAACTGCGCGATCTGCATGGCGGACTTCGAGGAGGGCGAAGAGGTGTGT
CTTTAAGATGACCAGGCTGCTGCGTTGCGACTAGCGCACCAGGAGCAAGA
TATCCAGGCGAGAGAGGACGAGCTTCTAGCCATGCGCTTAGCCGCTCTGG
AGGAAGCCGGCGTCGAACGCCGAGCGCTCCGCCGCCGCTTGCACCGCCGG
AGCCGCCAGAGCTCCTCGACCCGGGTTGTGCTCGACCCCGCTACCGCCGC
CGCAGTCGCCATGGGCGGCGAGGTAAGTGAGGCCGTTCGCGCTCTGCAGT
TCCAGGACATAGATGAGAACGACTTCGAGACATTGTTGGCTTTGGACGAG
GGGGGGGGCGAGGGGGGCAGGTGTTGCGGTGGTGGGCGAGGGTTGACCGA
GACGGCCATGGAGGCTGTGCTTCGGTCGGGCAAGGCGACGGGGGTTACTC
TGCAGGAGAACTGCGCGATCTGCATGGCGGACTTCGAGGAGGGCGAAGAG
GTGTGTCTTTAA
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