mRNA_S-dermatodea_contig80183.16203.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig80183.16203.1
Unique NamemRNA_S-dermatodea_contig80183.16203.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig80183.16203.1 vs. uniprot
Match: A0A6H5KLN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLN7_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.440e-15
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:    1 SVFDLFSGFSQLTMGPRSVDLSAFCTPTGLYSWLRMPQGAAGAPSWFVSVMRIVTDDLRNFRTYLDD 201
            S+FDL S F Q+     +V L+AFCTPT L+ WLRMPQGA  +PSWFV V+  V   L     YLDD
Sbjct:   76 SIFDLNSAFHQIVCDEDTVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVINRVVHGLERVLAYLDD 142
[Close]
BLAST of mRNA_S-dermatodea_contig80183.16203.1 vs. uniprot
Match: A0A6H5K9P3_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9P3_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.610e-15
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:    1 SVFDLFSGFSQLTMGPRSVDLSAFCTPTGLYSWLRMPQGAAGAPSWFVSVMRIVTDDLRNFRTYLDD 201
            S+FDL S F Q+     +V L+AFCTPT L+ WLRMPQGA  +PSWFV V+  V   L     YLDD
Sbjct:  100 SIFDLNSAFHQIVCDDETVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVINRVVHGLDRVLVYLDD 166
[Close]
BLAST of mRNA_S-dermatodea_contig80183.16203.1 vs. uniprot
Match: A0A6H5K0K4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K4_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.640e-15
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    1 SVFDLFSGFSQLTMGPRSVDLSAFCTPTGLYSWLRMPQGAAGAPSWFVSVMRIVTDDLRNFRTYLDD 201
            S+FDL S F Q+     +V L+AFCTPT L+ WLRMPQGA  +PSWFV V++ V   L     YLDD
Sbjct: 1096 SIFDLNSAFHQIVCDEDTVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVIKRVVHGLERVLAYLDD 1162
[Close]
BLAST of mRNA_S-dermatodea_contig80183.16203.1 vs. uniprot
Match: A0A6H5JQE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQE7_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.650e-15
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 SVFDLFSGFSQLTMGPRSVDLSAFCTPTGLYSWLRMPQGAAGAPSWFVSVMRIVTDDLRNFRTYLDD 201
            SVFDL S F Q+T+   +V L+AFCTPT L+ WLRMPQG++ APSWF  V+  V   L +   YLDD
Sbjct:  376 SVFDLNSAFHQITVEEDTVQLTAFCTPTQLFEWLRMPQGSSVAPSWFTMVINEVVKGLDHVLAYLDD 442
[Close]
BLAST of mRNA_S-dermatodea_contig80183.16203.1 vs. uniprot
Match: A0A6H5KAP1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAP1_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 3.970e-15
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:    1 SVFDLFSGFSQLTMGPRSVDLSAFCTPTGLYSWLRMPQGAAGAPSWFVSVMRIVTDDLRNFRTYLDD 201
            S+FDL S F Q+     +V L+AFCTPT L+ WLRMPQGA  +PSWFV V+  V   L     YLDD
Sbjct:  301 SIFDLNSAFHQIVCDEDTVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVINRVVHGLERVLAYLDD 367
[Close]
BLAST of mRNA_S-dermatodea_contig80183.16203.1 vs. uniprot
Match: A0A6H5KSA0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA0_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 4.760e-15
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:    1 SVFDLFSGFSQLTMGPRSVDLSAFCTPTGLYSWLRMPQGAAGAPSWFVSVMRIVTDDLRNFRTYLDD 201
            S+FDL S F Q+     +V L+AFCTPT L+ WLRMPQGA  +PSWFV V+  V   L     YLDD
Sbjct:   76 SIFDLNSAFHQIVCDEDTVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVINRVVHGLERVLAYLDD 142
[Close]
BLAST of mRNA_S-dermatodea_contig80183.16203.1 vs. uniprot
Match: A0A6H5K8W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W5_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 4.780e-15
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:    1 SVFDLFSGFSQLTMGPRSVDLSAFCTPTGLYSWLRMPQGAAGAPSWFVSVMRIVTDDLRNFRTYLDD 201
            S+FDL S F Q+     +V L+AFCTPT L+ WLRMPQGA  +PSWFV V+  V   L     YLDD
Sbjct:   62 SIFDLNSAFHQIVCDEDTVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVINRVVHGLERVLAYLDD 128
[Close]
BLAST of mRNA_S-dermatodea_contig80183.16203.1 vs. uniprot
Match: A0A6H5JDY1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDY1_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 4.850e-15
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:    1 SVFDLFSGFSQLTMGPRSVDLSAFCTPTGLYSWLRMPQGAAGAPSWFVSVMRIVTDDLRNFRTYLDD 201
            S+FDL S F Q+     +V L+AFCTPT L+ WLRMPQGA  +PSWFV V+  V   L     YLDD
Sbjct:  238 SIFDLNSAFHQIVCDEDTVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVINRVVHGLERVLAYLDD 304
[Close]
BLAST of mRNA_S-dermatodea_contig80183.16203.1 vs. uniprot
Match: A0A6H5JV07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV07_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 4.860e-15
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:    1 SVFDLFSGFSQLTMGPRSVDLSAFCTPTGLYSWLRMPQGAAGAPSWFVSVMRIVTDDLRNFRTYLDD 201
            S+FDL S F Q+     +V L+AFCTPT L+ WLRMPQGA  +PSWFV V+  V   L     YLDD
Sbjct:   40 SIFDLNSAFHQIVCDEDTVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVINRVVHGLERVLAYLDD 106
[Close]
BLAST of mRNA_S-dermatodea_contig80183.16203.1 vs. uniprot
Match: A0A6H5L4V5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V5_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 4.870e-15
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:    1 SVFDLFSGFSQLTMGPRSVDLSAFCTPTGLYSWLRMPQGAAGAPSWFVSVMRIVTDDLRNFRTYLDD 201
            S+FDL S F Q+     +V L+AFCTPT L+ WLRMPQGA  +PSWFV V+  V   L     YLDD
Sbjct:  144 SIFDLNSAFHQIVCDEDTVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVINRVVHGLERVLAYLDD 210
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig80183.16203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLN7_9PHAE1.440e-1553.73Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K9P3_9PHAE1.610e-1553.73Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K0K4_9PHAE2.640e-1553.73Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JQE7_9PHAE2.650e-1555.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAP1_9PHAE3.970e-1553.73Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KSA0_9PHAE4.760e-1553.73Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K8W5_9PHAE4.780e-1553.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDY1_9PHAE4.850e-1553.73Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JV07_9PHAE4.860e-1553.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4V5_9PHAE4.870e-1553.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig80183contigS-dermatodea_contig80183:13..213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925314.471712-CDS-S-dermatodea_contig80183:12..2131622925314.471712-CDS-S-dermatodea_contig80183:12..213Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80183 13..213 +
1694079849.117904-CDS-S-dermatodea_contig80183:12..2131694079849.117904-CDS-S-dermatodea_contig80183:12..213Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80183 13..213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig80183.16203.1prot_S-dermatodea_contig80183.16203.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig80183 13..213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig80183.16203.1

>prot_S-dermatodea_contig80183.16203.1 ID=prot_S-dermatodea_contig80183.16203.1|Name=mRNA_S-dermatodea_contig80183.16203.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=67bp
SVFDLFSGFSQLTMGPRSVDLSAFCTPTGLYSWLRMPQGAAGAPSWFVSV
MRIVTDDLRNFRTYLDD
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mRNA from alignment at S-dermatodea_contig80183:13..213+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig80183.16203.1 ID=mRNA_S-dermatodea_contig80183.16203.1|Name=mRNA_S-dermatodea_contig80183.16203.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at S-dermatodea_contig80183:13..213+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCCGTTTTTGACCTCTTCTCGGGTTTTTCGCAACTCACCATGGGTCCCCG
CAGCGTCGACCTATCGGCTTTTTGCACGCCCACTGGGCTTTACAGCTGGC
TCCGCATGCCCCAAGGTGCTGCCGGTGCTCCATCCTGGTTCGTCTCCGTC
ATGCGTATCGTCACCGATGACCTCCGCAACTTCCGGACGTACCTCGACGA
C
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Coding sequence (CDS) from alignment at S-dermatodea_contig80183:13..213+

>mRNA_S-dermatodea_contig80183.16203.1 ID=mRNA_S-dermatodea_contig80183.16203.1|Name=mRNA_S-dermatodea_contig80183.16203.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at S-dermatodea_contig80183:13..213+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCCGTTTTTGACCTCTTCTCGGGTTTTTCGCAACTCACCATGGGTCCCCG
CAGCGTCGACCTATCGGCTTTTTGCACGCCCACTGGGCTTTACAGCTGGC
TCCGCATGCCCCAAGGTGCTGCCGGTGCTCCATCCTGGTTCGTCTCCGTC
ATGCGTATCGTCACCGATGACCTCCGCAACTTCCGGACGTACCTCGACGA
CTCCGTTTTTGACCTCTTCTCGGGTTTTTCGCAACTCACCATGGGTCCCC
GCAGCGTCGACCTATCGGCTTTTTGCACGCCCACTGGGCTTTACAGCTGG
CTCCGCATGCCCCAAGGTGCTGCCGGTGCTCCATCCTGGTTCGTCTCCGT
CATGCGTATCGTCACCGATGACCTCCGCAACTTCCGGACGTACCTCGACG
AC
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