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Homology
BLAST of mRNA_S-dermatodea_contig8015.16202.1 vs. uniprot
Match: A0A6H5L7F3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F3_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 5.090e-11 Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 2
Query: 320 LRKSCDNCVKLKRACNGESPCRLCARMRKVCCFSAKKRSGPRKGTKYNTRR 472
LRKSCD CV+LKRAC+G+SPC+LC R R+ C S K++SGP KGTKY TRR
Sbjct: 34 LRKSCDLCVRLKRACDGQSPCQLCLRRRETCTRSVKRKSGPAKGTKYTTRR 84
BLAST of mRNA_S-dermatodea_contig8015.16202.1 vs. uniprot
Match: D8LPZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ9_ECTSI) HSP 1 Score: 75.1 bits (183), Expect = 2.180e-10 Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 2
Query: 320 LRKSCDNCVKLKRACNGESPCRLCARMRKVCCFSAKKRSGPRKGTKYNTRRA 475
LRKSCD CV+LKRAC+G++PC LC R R+ C S K++SGP KGTKY TRR+
Sbjct: 62 LRKSCDLCVRLKRACDGKNPCHLCLRRRETCTRSVKRKSGPAKGTKYTTRRS 113
BLAST of mRNA_S-dermatodea_contig8015.16202.1 vs. uniprot
Match: A0A6H5L009_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L009_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 2.840e-10 Identity = 49/114 (42.98%), Postives = 61/114 (53.51%), Query Frame = 2
Query: 320 LRKSCDNCVKLKRACNGESPCRLCARMRKVCCFSAKKRSGPRKGTKYNTRRAHN---------SNKGTTPQTQQY---GEAVRGGHLQQYTL-----DAEWHRATKRRAEDGGG 610
LRKSCD CV+LKRAC+G++PC LCAR K C SA+K+SGP KGTKY RR + G P ++ G + GG L + DA RA +R GGG
Sbjct: 10 LRKSCDYCVRLKRACDGKNPCSLCARRHKPCTRSARKKSGPAKGTKYAPRRKRSVIAEWADRTGGAGGPPLPHEFQGGGTSGGGGQLPHHDFSLAPFDAAGMRAAERTYNSGGG 123
BLAST of mRNA_S-dermatodea_contig8015.16202.1 vs. uniprot
Match: D7FPF9_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF9_ECTSI) HSP 1 Score: 73.9 bits (180), Expect = 4.960e-10 Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 2
Query: 320 LRKSCDNCVKLKRACNGESPCRLCARMRKVCCFSAKKRSGPRKGTKYNTRR 472
LRKSCD CV+LKRAC+G++PC LCAR K C SA+K+SGP KGTKY RR
Sbjct: 18 LRKSCDYCVRLKRACDGKNPCSLCARRHKPCTRSARKKSGPAKGTKYAPRR 68
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 1818 |
| Cds size | 1425 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8015.16202.1 >prot_S-dermatodea_contig8015.16202.1 ID=prot_S-dermatodea_contig8015.16202.1|Name=mRNA_S-dermatodea_contig8015.16202.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=475bp
MMLSEVAKRMAERKARQEGVDALGMRGVPLPEQLLLLQGKTTTTDKNSNN SNTSCGRHTAVSFCPPPSPSIDASNLRKSCDNCVKLKRACNGESPCRLCA RMRKVCCFSAKKRSGPRKGTKYNTRRAHNSNKGTTPQTQQYGEAVRGGHL QQYTLDAEWHRATKRRAEDGGGETSFVRRANNKIQRLPTVDPASKVTSFA EQPAEAGDVTRPLPAIEEGALLLLRKLKTFRPSSETMGSTPLEPARHYPQ EEPKQQTQRLPSLFDMGAVSSPPAHLSDALHRRAFSYGTQSLAQSVTGTA TPRRRLQEITHPRVGKGCAFPSLATRVILSEPAAPVMVPSFPRYVRAPIE DVPCAQPYHATPLYGGEAIVWEPRAVTPSQPVCDPYAQDWVPVPQSFASR GKSGMCSTWRAGGSAPSAIGRTRSGGYAEYVPYHRVETKGFPVAPAGVGR GGSGMGVRFDRCSTSARYLYAKTY* back to topmRNA from alignment at S-dermatodea_contig8015:2525..6325+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig8015.16202.1 ID=mRNA_S-dermatodea_contig8015.16202.1|Name=mRNA_S-dermatodea_contig8015.16202.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3801bp|location=Sequence derived from alignment at S-dermatodea_contig8015:2525..6325+ (Saccorhiza dermatodea SderLu1190fm monoicous) CACCCCACCCCCGCACACACAGAGGATCCACCTGCTGCCGCCCTGCTGCC
CTTCAATCACGCTCCCACGGGACGCAACAAAAGCGGATAGATAGATGATG
CTCTCCGAGGTGGCGAAGAGGATGGCTGAAAGAAAGGCCAGGCAAGAAGG
TGTAGACGCGCTCGGAATGCGAGGAGTGCCGCTGCCAGAACAATTACTAC
TTCTGCAGGGCAAGACCACCACCACCGACAAAAACAGCAACAACAGCAAC
ACCAGCTGCGGTCGGCACACCGCGGTTTCCTTTTGTCCGCCCCCTTCCCC
CTCGATAGACGCGTCCAACCTGAGGAAGAGCTGCGACAACTGCGTCAAGC
TGAAGCGCGCCTGCAACGGCGAGAGCCCGTGCAGGCTGTGCGCTCGGATG
AGGAAGGTCTGCTGTTTTTCTGCTAAGAAACGCAGTGGGCCGCGGAAAGG
CACCAAATACAACACAAGAAGAGCTCACAACAGCAACAAGGGGACTACTC
CCCAGACACAGCAGTATGGCGAGGCCGTCCGCGGTGGCCACCTCCAGCAG
TACACCTTGGACGCGGAGTGGCACAGGGCCACAAAGCGGCGGGCAGAGGA
CGGCGGGGGCGAGACGTCGTTCGTGAGGAGGGCAAACAACAAGATTCAGC
GCCTCCCAACGGTGGATCCAGCATCAAAGGTGACCTCATTTGCCGAACAG
CCCGCTGAGGCCGGAGACGTGACACGACCACTGCCAGCCATCGAGGAGGG
GGCGCTGTTGCTCTTGCGGAAGCTGAAGACCTTTCGCCCTTCCTCTGAGA
CCATGGGATCCACCCCACTTGAGCCTGTGAGTGTGCGGCGAAGCGGTTTG
GGGGCGCGTTCATGTACAGCAGTATCATGCAGTATAGTATCATATCCAGT
TATAGTATATATGGTATATATATACCTGTATACCTGCTGTTGGTTGAAAG
TGGAACAAAATATGTATACAGTCAGTAGTATACAAGTGGAGCTCTATGGG
GATAGTGAGTATATAGCATAATACTATGCACAGCGCGAAGTTGGAAACTT
ACTGTTTTGTAAGCTACTGGTAGATTATAGTTTCATATCATATCCAGACC
TAAATAAATACTCTGTTCAAGTACAGTACTGCATTTTGGTATGATACACG
TGAAGCACACGTGTCGTTGGCATGTGCCACCTCGGCGTTCCCACCTGGCC
AATAACCCTGTTACAGAGTATGATTCAGTTCACTCTTGACTCTTCCCTAT
ATTATTTGATTGGAACAGATCGAATTGCATCAAGTCACCCCGGCGAAGAT
ATCAGCAACAAACAAACGTACACATCATATGATACTACTTGCCGAAGTAC
CTGGTACATGATACTATGCATGATACAGCAGTAGATTTGCCTTTTGATCT
TTTGATGCGAACGCGCCTCGTCGTGCTTGTATTTTGTATTTGTGTTCGCC
GAGTTGCGGAACGGTGTAATAACCAACGATGAGTTGCCTGTGTGCCTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGCCCAACATTTAT
TTTAGGATTGTGACGATACGCTGTGCTTGGTAACGGTAAACCCTCTCGCG
TACCAGGTAGTTAATAATACTGCACTCTTTGCGTGTCTGACCACAAGTCG
GGTCGGATTAAGCCGATCGGCTATTATATACGTGTGCAAATCAATCAAAT
CAATCAAATCAATGTCACAAGTAATTATTTACTTGGTCGCCAATTCGAAC
CGACCCTTGCCTCCTGGCCTGCAAAACCCGGTGTATTTGATTTGATTTTG
ATTGATTTGATTTGCACACGTATACGAGTAGCCGATCGGCATAATCCGAC
CCGACTTGTGGTCAGACACGCAAAGAGTCAAGGAGAAAAATAACTAATCA
GAATTCAATTTCTTTCTTTCTACTACTATATACACCATACCGCCCCCTGA
GATACTTACTACATTATAGTACAAGAAATAGGAAATAGCACCCCAGATAT
AGATATAGAGAAAAAAAAAACGCTACAAGAGACTCGGACTCAAATAAACA
ATGAATGCTCCCTCGCCTCTCCACAGGTCCTTTCATAGGCATAATATTCT
CAACACCCATCCTCGTTCCAATAATCTGATAATCCTGGATCAGAAGTTGA
ATTTTGAAATTTTGTATAGTGCTCTACGAGTATCATAGCCACGATGATAT
CTATTATACTTACAGAACAGTAAGGTCTCAGCTGCTGCGTATCCAGGCGC
TCATAGTCAACGGTGGGACTTATATAAAATAATAGGATTAGCTGGATGAT
CTTGTCATGTGATTTTTTCACAACTATTTACAGAAGTACCGAGGAGCGGT
CGACGGACAGTTTTTTCTTGCTGCAGACCTTTGACCACATACCACATTTG
CAGTCAAATCTCCATCAAGCAATACAACTTAAGTACACTTGTACTACTGA
GTTATTATATAATGATGCCCCGCGTACCGCCGATACACTCCGCCCGAGCG
GCCGATCCCAATACCATCATAGCATCATATTATACTTGTTAATAGAGTGG
TAAATAATTACAGAACACAACCGGTACAATATCTCGACCTCCTGGCAGCG
ATGACAAACAATGCAATACAATACAGAGTACTTGTACCCAAAGCGTGTGG
TACAGTAGTAGTATACGAGGTGGCGCATAAGTTCAGTTAGATCAATACGC
ACCTATACGTACCTGACATGCGTCGCGTGGCCCTCTTCGAGATGCTGGCC
TCTGAGAAGTCATGTTGATTCTCCTCTCTTGTCGTGTCTTCGCGTCTGTT
TCTTGCCAGGCACGCCACTACCCGCAGGAGGAGCCAAAGCAGCAAACCCA
ACGGCTCCCTAGCCTGTTCGACATGGGCGCCGTATCCTCCCCCCCTGCAC
ACCTGTCAGATGCTCTTCATCGTCGGGCGTTCAGCTATGGAACACAAAGC
TTAGCGCAGAGCGTTACGGGCACCGCCACGCCCCGCAGGCGGCTGCAAGA
AATCACTCACCCGCGGGTGGGGAAGGGGTGCGCTTTCCCCAGCTTGGCGA
CACGGGTGATACTCAGCGAGCCGGCGGCGCCGGTGATGGTCCCCTCTTTC
CCCCGCTATGTGCGTGCGCCGATCGAAGACGTTCCCTGCGCACAACCGTA
CCATGCGACGCCGCTATACGGCGGGGAGGCGATCGTGTGGGAACCGCGCG
CAGTGACTCCATCCCAACCCGTGTGCGATCCCTATGCCCAAGACTGGGTG
CCCGTTCCGCAGAGCTTCGCGTCAAGGGGCAAGTCGGGGATGTGCAGCAC
TTGGCGAGCCGGCGGGTCGGCTCCATCAGCAATCGGAAGGACGAGGAGTG
GGGGCTACGCAGAATACGTTCCGTACCATCGTGTGGAAACGAAAGGCTTT
CCGGTGGCGCCTGCGGGAGTCGGCCGGGGTGGTTCAGGGATGGGCGTGAG
GTTCGATAGGTGCTCGACATCCGCTAGGTACTTGTATGCCAAGACCTACT
GAGCGGGGGTGGTGCTGCAAAGGGCCGGGACCCCCAAGTATGTGCGGTGT
AGCGCTTGCCGCCAGTGACGGATGTGGATCATCAGCTTTTGTAGTAGCTC
TAATACCGTTTCAGATTTCACGTGTAGCATTCGTCACTCACCTGCTTGCG
GTTTGCCTTAAGGTATATGATACTGTAGTTCCGACTCTCAAAACTGTACT
AGTGTAGTATATTCTCATCATGTGAGGAGATATAGCTCTGGCCCTTGCGC
TATTTGACATATCTCTGGATGTCGCCCTCGAGCTCTAATGCATGAGGGGG
G back to topCoding sequence (CDS) from alignment at S-dermatodea_contig8015:2525..6325+ >mRNA_S-dermatodea_contig8015.16202.1 ID=mRNA_S-dermatodea_contig8015.16202.1|Name=mRNA_S-dermatodea_contig8015.16202.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2850bp|location=Sequence derived from alignment at S-dermatodea_contig8015:2525..6325+ (Saccorhiza dermatodea SderLu1190fm monoicous) ATGATGCTCTCCGAGGTGGCGAAGAGGATGGCTGAAAGAAAGGCCAGGCA AGAAGGTGTAGACGCGCTCGGAATGCGAGGAGTGCCGCTGCCAGAACAAT TACTACTTCTGCAGGGCAAGACCACCACCACCGACAAAAACAGCAACAAC AGCAACACCAGCTGCGGTCGGCACACCGCGGTTTCCTTTTGTCCGCCCCC TTCCCCCTCGATAGACGCGTCCAACCTGAGGAAGAGCTGCGACAACTGCG TCAAGCTGAAGCGCGCCTGCAACGGCGAGAGCCCGTGCAGGCTGTGCGCT CGGATGAGGAAGGTCTGCTGTTTTTCTGCTAAGAAACGCAGTGGGCCGCG GAAAGGCACCAAATACAACACAAGAAGAGCTCACAACAGCAACAAGGGGA CTACTCCCCAGACACAGCAGTATGGCGAGGCCGTCCGCGGTGGCCACCTC CAGCAGTACACCTTGGACGCGGAGTGGCACAGGGCCACAAAGCGGCGGGC AGAGGACGGCGGGGGCGAGACGTCGTTCGTGAGGAGGGCAAACAACAAGA TTCAGCGCCTCCCAACGGTGGATCCAGCATCAAAGGTGACCTCATTTGCC GAACAGCCCGCTGAGGCCGGAGACGTGACACGACCACTGCCAGCCATCGA GGAGGGGGCGCTGTTGCTCTTGCGGAAGCTGAAGACCTTTCGCCCTTCCT CTGAGACCATGGGATCCACCCCACTTGAGCCTATGATGCTCTCCGAGGTG GCGAAGAGGATGGCTGAAAGAAAGGCCAGGCAAGAAGGTGTAGACGCGCT CGGAATGCGAGGAGTGCCGCTGCCAGAACAATTACTACTTCTGCAGGGCA AGACCACCACCACCGACAAAAACAGCAACAACAGCAACACCAGCTGCGGT CGGCACACCGCGGTTTCCTTTTGTCCGCCCCCTTCCCCCTCGATAGACGC GTCCAACCTGAGGAAGAGCTGCGACAACTGCGTCAAGCTGAAGCGCGCCT GCAACGGCGAGAGCCCGTGCAGGCTGTGCGCTCGGATGAGGAAGGTCTGC TGTTTTTCTGCTAAGAAACGCAGTGGGCCGCGGAAAGGCACCAAATACAA CACAAGAAGAGCTCACAACAGCAACAAGGGGACTACTCCCCAGACACAGC AGTATGGCGAGGCCGTCCGCGGTGGCCACCTCCAGCAGTACACCTTGGAC GCGGAGTGGCACAGGGCCACAAAGCGGCGGGCAGAGGACGGCGGGGGCGA GACGTCGTTCGTGAGGAGGGCAAACAACAAGATTCAGCGCCTCCCAACGG TGGATCCAGCATCAAAGGTGACCTCATTTGCCGAACAGCCCGCTGAGGCC GGAGACGTGACACGACCACTGCCAGCCATCGAGGAGGGGGCGCTGTTGCT CTTGCGGAAGCTGAAGACCTTTCGCCCTTCCTCTGAGACCATGGGATCCA CCCCACTTGAGCCTGCACGCCACTACCCGCAGGAGGAGCCAAAGCAGCAA ACCCAACGGCTCCCTAGCCTGTTCGACATGGGCGCCGTATCCTCCCCCCC TGCACACCTGTCAGATGCTCTTCATCGTCGGGCGTTCAGCTATGGAACAC AAAGCTTAGCGCAGAGCGTTACGGGCACCGCCACGCCCCGCAGGCGGCTG CAAGAAATCACTCACCCGCGGGTGGGGAAGGGGTGCGCTTTCCCCAGCTT GGCGACACGGGTGATACTCAGCGAGCCGGCGGCGCCGGTGATGGTCCCCT CTTTCCCCCGCTATGTGCGTGCGCCGATCGAAGACGTTCCCTGCGCACAA CCGTACCATGCGACGCCGCTATACGGCGGGGAGGCGATCGTGTGGGAACC GCGCGCAGTGACTCCATCCCAACCCGTGTGCGATCCCTATGCCCAAGACT GGGTGCCCGTTCCGCAGAGCTTCGCGTCAAGGGGCAAGTCGGGGATGTGC AGCACTTGGCGAGCCGGCGGGTCGGCTCCATCAGCAATCGGAAGGACGAG GAGTGGGGGCTACGCAGAATACGTTCCGTACCATCGTGTGGAAACGAAAG GCTTTCCGGTGGCGCCTGCGGGAGTCGGCCGGGGTGGTTCAGGGATGGGC GTGAGGTTCGATAGGTGCTCGACATCCGCTAGGTACTTGTATGCCAAGAC CTACTGAGCACGCCACTACCCGCAGGAGGAGCCAAAGCAGCAAACCCAAC GGCTCCCTAGCCTGTTCGACATGGGCGCCGTATCCTCCCCCCCTGCACAC CTGTCAGATGCTCTTCATCGTCGGGCGTTCAGCTATGGAACACAAAGCTT AGCGCAGAGCGTTACGGGCACCGCCACGCCCCGCAGGCGGCTGCAAGAAA TCACTCACCCGCGGGTGGGGAAGGGGTGCGCTTTCCCCAGCTTGGCGACA CGGGTGATACTCAGCGAGCCGGCGGCGCCGGTGATGGTCCCCTCTTTCCC CCGCTATGTGCGTGCGCCGATCGAAGACGTTCCCTGCGCACAACCGTACC ATGCGACGCCGCTATACGGCGGGGAGGCGATCGTGTGGGAACCGCGCGCA GTGACTCCATCCCAACCCGTGTGCGATCCCTATGCCCAAGACTGGGTGCC CGTTCCGCAGAGCTTCGCGTCAAGGGGCAAGTCGGGGATGTGCAGCACTT GGCGAGCCGGCGGGTCGGCTCCATCAGCAATCGGAAGGACGAGGAGTGGG GGCTACGCAGAATACGTTCCGTACCATCGTGTGGAAACGAAAGGCTTTCC GGTGGCGCCTGCGGGAGTCGGCCGGGGTGGTTCAGGGATGGGCGTGAGGT TCGATAGGTGCTCGACATCCGCTAGGTACTTGTATGCCAAGACCTACTGA back to top
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