mRNA_S-dermatodea_contig80090.16194.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig80090.16194.1
Unique NamemRNA_S-dermatodea_contig80090.16194.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig80090.16194.1 vs. uniprot
Match: D8LLL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLL5_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.340e-19
Identity = 40/59 (67.80%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:    1 KAFLQSYSCQSVRTLSALCVTNLDTGRQAEGVHETAIFWGEIPPDTVDAVVSRGVIMNS 177
            KAFL+SYSC+SV+TLSALCVTNLD GR AEGVHE+ + W EI P  VD V++RG +M S
Sbjct:  130 KAFLRSYSCRSVKTLSALCVTNLDNGRAAEGVHESTVAWREISPAVVDDVIARGNVMGS 188
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BLAST of mRNA_S-dermatodea_contig80090.16194.1 vs. uniprot
Match: A0A7S2XZD4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZD4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.650e-9
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:    1 KAFLQSYSCQSVRTLSALCVTNLDTGRQAEGVHETAIFWGEIPPDTVDAVVSRGVIMNS 177
            +A+L SYS  SV T+S + VTN  +G+ AEGV    + W  I P+ ++ VV+RG IM S
Sbjct:  107 RAYLSSYSGNSVSTVSGVMVTNTGSGKSAEGVDVATVHWDTISPEVIERVVARGEIMTS 165
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BLAST of mRNA_S-dermatodea_contig80090.16194.1 vs. uniprot
Match: A0A7S0X8V1_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X8V1_9CHLO)

HSP 1 Score: 48.1 bits (113), Expect = 7.080e-5
Identity = 21/54 (38.89%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:    1 KAFLQSYSCQSVRTLSALCVTNLDTGRQAEGVHETAIFWGEIPPDTVDAVVSRG 162
            +AF+ SY     RT+ A+ VT+LDTGR+      + + +  IPP+ VD ++S G
Sbjct:  224 RAFIASYGESPARTVGAIVVTDLDTGRRVASGDSSEVHFSPIPPEVVDFLISEG 277
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig80090.16194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LLL5_ECTSI1.340e-1967.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XZD4_9STRA6.650e-945.76Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0X8V1_9CHLO7.080e-538.89Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig80090contigS-dermatodea_contig80090:90..266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue4.1e-15
Seed eggNOG ortholog2880.D8LLL5
KEGG koko:K06287
EggNOG free text desc.nucleoside-triphosphate diphosphatase activity
EggNOG OGsCOG0424@1,KOG1509@2759
Ec32 ortholog descriptionMaf-like protein
Ec32 orthologEc-04_005320.1
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925313.8552551-CDS-S-dermatodea_contig80090:89..2661622925313.8552551-CDS-S-dermatodea_contig80090:89..266Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80090 90..266 +
1694079848.6872938-CDS-S-dermatodea_contig80090:89..2661694079848.6872938-CDS-S-dermatodea_contig80090:89..266Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80090 90..266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig80090.16194.1prot_S-dermatodea_contig80090.16194.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig80090 90..266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig80090.16194.1

>prot_S-dermatodea_contig80090.16194.1 ID=prot_S-dermatodea_contig80090.16194.1|Name=mRNA_S-dermatodea_contig80090.16194.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=59bp
KAFLQSYSCQSVRTLSALCVTNLDTGRQAEGVHETAIFWGEIPPDTVDAV
VSRGVIMNS
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mRNA from alignment at S-dermatodea_contig80090:90..266+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig80090.16194.1 ID=mRNA_S-dermatodea_contig80090.16194.1|Name=mRNA_S-dermatodea_contig80090.16194.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at S-dermatodea_contig80090:90..266+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGCATTCCTCCAGAGCTACTCCTGCCAGTCGGTGCGAACGTTGAGTGC
TCTGTGCGTGACGAACCTCGACACAGGCCGACAGGCAGAGGGGGTGCACG
AGACGGCGATTTTCTGGGGGGAGATACCGCCGGACACCGTCGACGCCGTC
GTCAGCAGGGGCGTTATCATGAACTCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig80090:90..266+

>mRNA_S-dermatodea_contig80090.16194.1 ID=mRNA_S-dermatodea_contig80090.16194.1|Name=mRNA_S-dermatodea_contig80090.16194.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at S-dermatodea_contig80090:90..266+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGGCATTCCTCCAGAGCTACTCCTGCCAGTCGGTGCGAACGTTGAGTGC
TCTGTGCGTGACGAACCTCGACACAGGCCGACAGGCAGAGGGGGTGCACG
AGACGGCGATTTTCTGGGGGGAGATACCGCCGGACACCGTCGACGCCGTC
GTCAGCAGGGGCGTTATCATGAACTCGAAGGCATTCCTCCAGAGCTACTC
CTGCCAGTCGGTGCGAACGTTGAGTGCTCTGTGCGTGACGAACCTCGACA
CAGGCCGACAGGCAGAGGGGGTGCACGAGACGGCGATTTTCTGGGGGGAG
ATACCGCCGGACACCGTCGACGCCGTCGTCAGCAGGGGCGTTATCATGAA
CTCG
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