mRNA_S-dermatodea_contig10209.150.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10209.150.1
Unique NamemRNA_S-dermatodea_contig10209.150.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10209.150.1 vs. uniprot
Match: D7G795_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G795_ECTSI)

HSP 1 Score: 393 bits (1009), Expect = 5.580e-123
Identity = 195/276 (70.65%), Postives = 223/276 (80.80%), Query Frame = 1 
Query:    1 DDLRDKVEAMGGSFDASLTTNTTHLVADGFDTEKYRVTARSMEDVIIVRPGWVVESCRKRRRLPCEDFALPPFEGLRVTVTGLPMDRKEELREMIQTGGGEYMGAMELHRTTHLVAEVAAGAKYEAAISAAWKDSISVVHSRWLEESHCRRDAGGGNPGALDGNGHGGGGGATEGVPTKAEALALPDGRYLSGCRMMLVGFAAEALLPLSLLIRKGSGVRYASPNEELTHVVMGDRALAKPELVAALERHPCTPPVVHASWLLETCRAGRVLPTEG 828
            +DLR+KV AMGGSFD +LT +TTHL+A   DTEKYRV A  M+ V++VRP WV+ESCR+ R+LPCE  +LPPFEGLR+T+TGL MDRK ELR MI++GGGEYMGAME   TTHLVAE A G KYEAAIS  W  SI VVHSRWL++SH R            GN   GGGG  EGVPTK EALALPDG YLSGCR+M+VGF AEA+LPLSLL+RKG G+RY SPNEELTHVV+GDRALAKPEL++ALE HPCTPPVVHA WLLETCRAGR+LPT+G
Sbjct:   22 EDLREKVNAMGGSFDVNLTMSTTHLLAASLDTEKYRV-ATGMKGVVVVRPDWVIESCREGRKLPCECHSLPPFEGLRITITGLSMDRKAELRAMIESGGGEYMGAMEARNTTHLVAEEATGMKYEAAISPEWNGSIKVVHSRWLQQSHARNR----------GNDAAGGGGRPEGVPTKEEALALPDGDYLSGCRVMIVGFPAEAVLPLSLLVRKGCGIRYISPNEELTHVVLGDRALAKPELISALESHPCTPPVVHALWLLETCRAGRMLPTDG 286
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BLAST of mRNA_S-dermatodea_contig10209.150.1 vs. uniprot
Match: A0A6H5KJL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL2_9PHAE)

HSP 1 Score: 347 bits (891), Expect = 5.300e-106
Identity = 196/382 (51.31%), Postives = 225/382 (58.90%), Query Frame = 1 
Query:    1 DDLRDKVEAMGGSFDASLTTNTTHLVADGFDTEKYRVTARSMEDVIIVRPGWVVESCRKRRRLPCEDFALPPFEGLRVTVTGLPMDRKEELREMIQTGGGEYMGAMELHRTTHLVAEVAAGAKYEAAISAAWKDSISVVHSRWLEESHCRRDA------------------------------------------------------------------GGGNPGALDG-----------------------------------NGHG-----GGGGATEGVPTKAEALALPDGRYLSGCRMMLVGFAAEALLPLSLLIRKGSGVRYASPNEELTHVVMGDRALAKPELVAALERHPCTPPVVHASWLLETCRAGRVLPTEG 828
            +DLR+KV AMGGSFD +LT +TTHL+A   DTEKYRV A  M+ V++VRP WV ESCR+ R+LPCE  +LPPFEGLR+T+TGL +DRK ELR MI++GGGEYMGAME   TTHLVAE A G KYEAAIS  W  SI VVHSRWL++SH R  A                                                                   G   GA +                                    NG G       GG  EGVPTK EALALPDG YLSGCR+M+VGF AEA+LPLSLL+RKG G+RY SPNEELTHVV+GDR LAKPEL++ALE HPCTPPVVHA WLLETCRAGR+LPT+G
Sbjct:   25 EDLREKVNAMGGSFDVNLTMSTTHLLAASLDTEKYRV-ATGMKGVVVVRPDWVTESCREGRKLPCERHSLPPFEGLRITITGLSLDRKAELRAMIESGGGEYMGAMEARNTTHLVAEEATGMKYEAAISPEWNGSIKVVHSRWLQQSHARNQARSPAWKPAPIVDIHPAERSDRPFCIVFPPLLLALSLPVRLPEEQFPVAPHHDEKQXXXXXXXXXXXXGKREGAHEAPTQDSGKGRQXXXXXXGGPAEPSSTAAASSRYPWANGEGDNDAAAAGGRPEGVPTKEEALALPDGDYLSGCRVMIVGFPAEAVLPLSLLVRKGCGIRYTSPNEELTHVVLGDRTLAKPELISALESHPCTPPVVHALWLLETCRAGRMLPTDG 405
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BLAST of mRNA_S-dermatodea_contig10209.150.1 vs. uniprot
Match: A0A835Z0S7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0S7_9STRA)

HSP 1 Score: 133 bits (334), Expect = 2.260e-31
Identity = 93/299 (31.10%), Postives = 129/299 (43.14%), Query Frame = 1 
Query:    7 LRDKVEAMGGSFDASLTTNTTHLVADGFDTEKYRVTARSMEDVIIVRPGWVVESCRKRRRLPCEDFALPPFEGLRVTVTGLPMDRKEELREMIQTGGGEYMGAMELHRTTHLVAEVAAGAKYEAA--------ISAAWKDSISVVHSRWLEESHC-----------------RRDAGGGNPGALDGNGHGGGGGATEGVPTKAEALALP-DGRYLSGCRMMLVGFAAEALLPLSLLIRKGSGVRYASPNEELTHVVMGDRALAKPELVAALERHPCTPPVVHASWLLETCRAGRVLPTE 825
            +R  VE++GG +   LT  TTHL+A     +KY + A     + I  P W +     R RLP  DFALPPF G+    +GLP  R+             Y G M++   THLV +   GAK++AA        +S AW D+     +R  E  +                                       G+ +G    A  LA   +   LSGCR++L GFAA     L+  +R+    R+A P+  LTHVV+GD AL     + AL  H   P VV A W+ ++  A   LP E
Sbjct:  275 VRRAVESLGGEYSPGLTHATTHLLARAAAGDKYAIAAARPAAIAIATPDWALRCAAARARLPAADFALPPFAGVHACCSGLPAARRXXXXXXXXXXXXAYRGDMDVDVVTHLVTDAPRGAKFDAARRARGCCVVSPAWVDACVAAGARVPEAQYAIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDVAGSPQGDDAFAAQLARARESGALSGCRVLLAGFAAPRAAALAAALRRARATRHAQPHPLLTHVVLGDPALVDAHTLEALASHRRAPRVVTAQWVFDSAAAAAALPAE 573
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BLAST of mRNA_S-dermatodea_contig10209.150.1 vs. uniprot
Match: A0A067CQH2_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQH2_SAPPC)

HSP 1 Score: 99.4 bits (246), Expect = 8.230e-20
Identity = 86/288 (29.86%), Postives = 129/288 (44.79%), Query Frame = 1 
Query:   19 VEAMGGSFDASLTTNTTHLVADGFDTEKYRVTARSMEDVIIVRPGWVVESCRKRRRLPCEDFALPPFEGLRVTVTGLPMDRKEELREMIQTGGGEYMGAMELHRTTHLVAEVAAGAKYEAAISAAWKDSISVVHSRWL----------EESHCRRDAGGGNPGALDGNGHGGGGGATEGVPTKAE---ALAL----PDGRYLSGCRMMLVGFAAEALLPLSLLIRKGSGVRYASPNEELTHVVMGDRALAKPELVAALERHPCTP----PVVHASWLLETCRAGRVLP 819
            V  +G S+D  L    THL+A    ++KY+  A     +++V+P W+VE  R    +P     L   EGL +  TGL M+ +E + ++       Y   +    T+HL+AE A GAKY+AAI+      I VV  +W+          +E + R  A   +   LD        G +  +    E    +AL    P G +L GC + L GF+ + LL +  L+R G G RY + N  +TH++           V    RH C       VV   WL+E+C A    P
Sbjct:   27 VHELGMSWDDDLHVGVTHLLAKTVGSDKYK--AAIAAGMVVVKPDWLVECSRAGSIVPTAAHELGILEGLCICTTGLYMEDREMVEQLCDEHRAVYQTDLIFGTTSHLLAEQAGGAKYDAAIA----HGIPVVTLQWMAACVEAKALVDEDNYRVLAD--DDVTLDD-------GPSSSMKLSDELTQCIALLRDEPRGDFLDGCVLWLPGFSQDILLKMKWLVRFGMGTRYDAYNPSVTHIIAD---------VLGNWRHYCDTNSSLEVVSPKWLIESCLAFECRP 290
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BLAST of mRNA_S-dermatodea_contig10209.150.1 vs. uniprot
Match: L8HKJ6_ACACA (Subunit of DNA polymerase II n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HKJ6_ACACA)

HSP 1 Score: 92.8 bits (229), Expect = 1.790e-17
Identity = 54/150 (36.00%), Postives = 85/150 (56.67%), Query Frame = 1 
Query:    7 LRDKVEAMGGSFDASLTTNTTHLVADGFDTEKYRVTARSMEDVIIVRPGWVVESCRKRRRLPCEDFALPPFEGLRVTVTGLPMDRKEELREMIQTGGGEYMGAMELHRT-THLVAEVAAGAKYEAAISAAWKDSISVVHSRWLEESHCRR 453
            L  +V  MGG +    T   TH++A    +EKY+V  +     + V P WV E  +++  +P + F +PPF GL +TVTG P D +E+++ +    GG+Y  + +L+R+ THL+ E     K++ A+   W  S+ VVH RWL ES  +R
Sbjct:  119 LVQRVLWMGGEWHMDFTNTVTHMLAYMPGSEKYKVAVQRGRPAL-VHPSWVTECWKQQALVPIDQFPVPPFTGLTMTVTGFPHDEREKMKRLCMQHGGQY--SSDLNRSCTHLIVERPGSKKHQYALL--W-GSVKVVHPRWLYESVEKR 262
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BLAST of mRNA_S-dermatodea_contig10209.150.1 vs. uniprot
Match: A0A484DXC9_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DXC9_BRELC)

HSP 1 Score: 88.6 bits (218), Expect = 3.920e-16
Identity = 83/311 (26.69%), Postives = 134/311 (43.09%), Query Frame = 1 
Query:    7 LRDKVEAMGGSFDASLTTN-TTHLVADGFDTEKYRVTARSMEDVIIVRPGWVVESCRKRRRLPCEDFALPPFEGLRVTVTGLPMDRKEELREMIQTGGGEYMGAMELHRTTHLVAEVAAGAKYEAAISAAWKDSISVVHSRWL-----------EESHCRRDAGGGNPGALDGNGHGGGGGATEGVPTKAEALAL----------------PDGRYLS---GCRMMLVGFAAEALLPLSLLIRKGSGVRYASPN-EELTHVVMGDRALAKPELVAALERHPC------TPPVVHASWLLETCRAGRVLPTE 825
            +R  V A GG FD  L  + TTHL+A+   + K+R  A     + +  P WV +S + ++ L  E FAL   EGL +  +GL ++ KE + +++ T GG Y    EL  T  L+A    GAKYEAA++      + VVH  WL           EE     +     P  +           ++ +    E +A                 P   Y+    GC + LVGF ++    L  ++R G G  Y      ++TH++ G  +L + + + A+  H        T   V A W++++ +   + P E
Sbjct:   56 VRKIVVACGGHFDDDLDPDLTTHLIAEVVGSLKHR--AAVAHGLSVALPRWVFDSFQAQKLLSVESFALKLLEGLDICTSGLTIEEKETVAQLVTTHGGHYNDTFELGVTNILIARQPHGAKYEAAVTY----DVPVVHLGWLDACVERSMIVEEEEFALTEHSSALPTYIA---------MSQEIDDTQELVAAFMDIVQKWPNQKNYGNPKDSYMELFDGCILYLVGFPSQLHTLLQRVLRIGMGTIYHDMVIHQVTHII-GSTSLHERKTLEAMRAHAMAANAFDTVSFVSARWVIDSIKCQTLQPEE 350
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BLAST of mRNA_S-dermatodea_contig10209.150.1 vs. uniprot
Match: A0A077ZN03_TRITR (BRCT and PTCB-BRCT domain containing protein n=1 Tax=Trichuris trichiura TaxID=36087 RepID=A0A077ZN03_TRITR)

HSP 1 Score: 87.0 bits (214), Expect = 1.390e-15
Identity = 56/156 (35.90%), Postives = 84/156 (53.85%), Query Frame = 1 
Query:    1 DDLRDKVEAMGGSFDASLTTNTTHLVADGFDTEKYRVTARSMEDVIIVRPGWVVESCRKR--RRLPCED------FALPPFEGLRVTVTGLPMDRKEELREMIQTGGGEYMGAMELHRTTHLVAEVAAGAKYEAAISAAW-KDSISVVHSRWLEES 441
            D L   ++ M G     LTT    L+A    ++KY   A    ++ IV P WV+ES ++R  R     D      F  P F GL +TV+GLPM+ +  +R++I   GG++ GA+  + TTHLVA+  +G KY AA  + W  + + +V S WL +S
Sbjct:  132 DILHSMIQWMDGDVQRVLTTECRVLIAQEVGSKKYH--AAVAVNIPIVTPRWVLESWKRRHDRNFHASDASFLNEFKCPAFLGLTITVSGLPMEERTRIRDLICNNGGKFSGALVQNETTHLVADKPSGQKYAAA--SRWVTNKVHIVRSDWLYKS 283
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BLAST of mRNA_S-dermatodea_contig10209.150.1 vs. uniprot
Match: A0A085LMU9_9BILA (Uncharacterized protein n=2 Tax=Trichuris suis TaxID=68888 RepID=A0A085LMU9_9BILA)

HSP 1 Score: 86.3 bits (212), Expect = 2.900e-15
Identity = 53/156 (33.97%), Postives = 82/156 (52.56%), Query Frame = 1 
Query:    1 DDLRDKVEAMGGSFDASLTTNTTHLVADGFDTEKYRVTARSMEDVIIVRPGWVVESCRKRRRLP--------CEDFALPPFEGLRVTVTGLPMDRKEELREMIQTGGGEYMGAMELHRTTHLVAEVAAGAKYEAAISAAW-KDSISVVHSRWLEES 441
            D L   ++ M G     LTT    L+A    ++KY     +  ++ IV P WV+ES ++R              DF  P F GL +TV+GLP++ +  +R+MI   GG++ GA+  + TTHLV +  +G KY AA  + W  + + +V S WL +S
Sbjct:  178 DILHSMIQWMDGDVQRVLTTECRILIAQEVGSKKYHAAVAA--NIPIVTPRWVLESWKRRHDRNFHASDVSFLNDFKCPAFLGLTITVSGLPLEERTRIRDMICNNGGKFSGALVQNETTHLVTDKPSGQKYAAA--SRWVTNKVHIVRSDWLYKS 329
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BLAST of mRNA_S-dermatodea_contig10209.150.1 vs. uniprot
Match: A0A224Z1I0_9ACAR (Topoisomerase (DNA) II binding protein 1 n=4 Tax=Rhipicephalus TaxID=426455 RepID=A0A224Z1I0_9ACAR)

HSP 1 Score: 84.0 bits (206), Expect = 1.800e-14
Identity = 52/152 (34.21%), Postives = 83/152 (54.61%), Query Frame = 1 
Query:    7 LRDKVEAMGGSFDASLTTNTTHLVADGFDTEKYRVTARSMEDVIIVRPGWVV----ESCRKRRRLPCEDFA---LPPFEGLRVTVTGLPMDRKEELREMIQTGGGEYMGAMELHRTTHLVAEVAAGAKYEAAISAAWKDSISVVHSRWLEES 441
            +++KVE MGG+  A LT++ TH+VA    ++KY V A     + +++P WV     E   K        ++   LP F+GL +TV+ +P   +++L+ +++  GG Y G +   +TTH+    A+G KY  A    WK  +  VH RWL ES
Sbjct:  126 IKEKVELMGGTTVAPLTSSVTHVVAGDVGSKKYHVAAN--RKIPVMQPSWVRLFWDEEQHKLAHAASPAYSHLRLPAFKGLVITVSQVPTAERKQLQALVELNGGSYSGQLHCKKTTHVALLDASGDKYNYA--RLWK--LHCVHVRWLYES 271
[Close]
BLAST of mRNA_S-dermatodea_contig10209.150.1 vs. uniprot
Match: UPI00077AD296 (DNA topoisomerase 2-binding protein 1-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AD296)

HSP 1 Score: 83.6 bits (205), Expect = 2.270e-14
Identity = 48/154 (31.17%), Postives = 84/154 (54.55%), Query Frame = 1 
Query:    1 DDLRDKVEAMGGSFDASLTTNTTHLVADGFDTEKYRVTARSMEDVIIVRPGWVV---ESCRKRRRLPCED----FALPPFEGLRVTVTGLPMDRKEELREMIQTGGGEYMGAMELHRTTHLVAEVAAGAKYEAAISAAWKDSISVVHSRWLEES 441
            D L + ++ MGG+    LT++ THLVA    ++KYRV     + + I  P WV    + CR R     +D    +  P F+G+ + VTG+ +++++E+++++   GG Y G + ++  THL+ E+  G KYE A     K ++  V  +W  +S
Sbjct:  121 DRLSELIQFMGGTVLKDLTSSVTHLVAGEVGSKKYRVACSLDQPMPIFLPEWVYTCWDMCRDRHICATDDEFMEYKCPVFKGITLCVTGIDVEKRKEIKQLVTCHGGIYSGELNMNTCTHLLVEIPRGEKYEYAR----KWNLHCVSVQWFFDS 270
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10209.150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G795_ECTSI5.580e-12370.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJL2_9PHAE5.300e-10651.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z0S7_9STRA2.260e-3131.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A067CQH2_SAPPC8.230e-2029.86Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
L8HKJ6_ACACA1.790e-1736.00Subunit of DNA polymerase II n=1 Tax=Acanthamoeba ... [more]
A0A484DXC9_BRELC3.920e-1626.69Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A077ZN03_TRITR1.390e-1535.90BRCT and PTCB-BRCT domain containing protein n=1 T... [more]
A0A085LMU9_9BILA2.900e-1533.97Uncharacterized protein n=2 Tax=Trichuris suis Tax... [more]
A0A224Z1I0_9ACAR1.800e-1434.21Topoisomerase (DNA) II binding protein 1 n=4 Tax=R... [more]
UPI00077AD2962.270e-1431.17DNA topoisomerase 2-binding protein 1-like n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10209contigS-dermatodea_contig10209:264..7247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score382.9
Seed ortholog evalue1.2e-103
Seed eggNOG ortholog2880.D7G795
KEGG koko:K03507,ko:K10728
KEGG Pathwayko03440,map03440
EggNOG free text desc.protein localization to site of double-strand break
EggNOG OGsKOG1929@1,KOG1929@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBRCT domain
Ec32 orthologEc-04_003680.1
Exons6
Model size831
Cds size804
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924145.0861845-UTR-S-dermatodea_contig10209:263..2901622924145.0861845-UTR-S-dermatodea_contig10209:263..290Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10209 264..290 +
1694079048.4669704-UTR-S-dermatodea_contig10209:263..2901694079048.4669704-UTR-S-dermatodea_contig10209:263..290Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10209 264..290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924145.1027124-CDS-S-dermatodea_contig10209:290..3921622924145.1027124-CDS-S-dermatodea_contig10209:290..392Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10209 291..392 +
1694079048.4785109-CDS-S-dermatodea_contig10209:290..3921694079048.4785109-CDS-S-dermatodea_contig10209:290..392Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10209 291..392 +
1622924145.1226811-CDS-S-dermatodea_contig10209:2490..26171622924145.1226811-CDS-S-dermatodea_contig10209:2490..2617Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10209 2491..2617 +
1694079048.4882545-CDS-S-dermatodea_contig10209:2490..26171694079048.4882545-CDS-S-dermatodea_contig10209:2490..2617Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10209 2491..2617 +
1622924145.132187-CDS-S-dermatodea_contig10209:3419..35141622924145.132187-CDS-S-dermatodea_contig10209:3419..3514Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10209 3420..3514 +
1694079048.4971344-CDS-S-dermatodea_contig10209:3419..35141694079048.4971344-CDS-S-dermatodea_contig10209:3419..3514Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10209 3420..3514 +
1622924145.1467686-CDS-S-dermatodea_contig10209:5233..53361622924145.1467686-CDS-S-dermatodea_contig10209:5233..5336Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10209 5234..5336 +
1694079048.5056903-CDS-S-dermatodea_contig10209:5233..53361694079048.5056903-CDS-S-dermatodea_contig10209:5233..5336Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10209 5234..5336 +
1622924145.156269-CDS-S-dermatodea_contig10209:6519..67241622924145.156269-CDS-S-dermatodea_contig10209:6519..6724Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10209 6520..6724 +
1694079048.514921-CDS-S-dermatodea_contig10209:6519..67241694079048.514921-CDS-S-dermatodea_contig10209:6519..6724Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10209 6520..6724 +
1622924145.164421-CDS-S-dermatodea_contig10209:7075..72471622924145.164421-CDS-S-dermatodea_contig10209:7075..7247Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10209 7076..7247 +
1694079048.5243983-CDS-S-dermatodea_contig10209:7075..72471694079048.5243983-CDS-S-dermatodea_contig10209:7075..7247Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10209 7076..7247 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10209.150.1prot_S-dermatodea_contig10209.150.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10209 291..7247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10209.150.1

>prot_S-dermatodea_contig10209.150.1 ID=prot_S-dermatodea_contig10209.150.1|Name=mRNA_S-dermatodea_contig10209.150.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=268bp
MGGSFDASLTTNTTHLVADGFDTEKYRVTARSMEDVIIVRPGWVVESCRK
RRRLPCEDFALPPFEGLRVTVTGLPMDRKEELREMIQTGGGEYMGAMELH
RTTHLVAEVAAGAKYEAAISAAWKDSISVVHSRWLEESHCRRDAGGGNPG
ALDGNGHGGGGGATEGVPTKAEALALPDGRYLSGCRMMLVGFAAEALLPL
SLLIRKGSGVRYASPNEELTHVVMGDRALAKPELVAALERHPCTPPVVHA
SWLLETCRAGRVLPTEG*
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mRNA from alignment at S-dermatodea_contig10209:264..7247+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10209.150.1 ID=mRNA_S-dermatodea_contig10209.150.1|Name=mRNA_S-dermatodea_contig10209.150.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6984bp|location=Sequence derived from alignment at S-dermatodea_contig10209:264..7247+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACGACCTGCGGGATAAGGTGGAAGCGATGGGGGGAAGCTTCGACGCGAG
CCTCACCACCAATACCACGCACCTCGTCGCGGACGGCTTCGACACCGAGA
AGTACCGCGTCACCGCAAGATCCATGGAGGTGTGTGTGTGTGATCCGTGT
CCTGTGATTTGTGATTTGTGAGTTGTGATTTTGGTGTGTTGTGGTTTTGA
GGAGGTTTGGCCGGGCTTGAAGGAACAAAGGCTGGATGGAAATCACCCCG
CAGACAGCGCTGTTGTTCCCTTCCTTTTGCGTGTAGGTGAGGACGCGATG
TCCCGGGGCACGTAGTCCAGAGGGCGCGATACCTTAAATACAGGCAGGCA
GACTGTCTATCTTCGGTGCCTAGCGAGGAGAACTATCGTATTTGTGGCGG
TGTTACTTATTCGTATCAGCGCTTACAGCTCTGATAGCACTATTAACATT
ATACACATCAGCACTGCTATAGCAGGGCTATGATAGCATTAAACTATCAC
TGTAACAGCACCAGCTGTAACAGTCCATCATTGCCTGGCGATTACCCGGT
CCCTGTCCACCTCCGTGTGTTTGCCGTATTGTAAACCGCGGGAGGTACGT
ACACATAAGTGATCAGGACCTAATTTCCGCTGAAAAACGTAGTCCAAGTA
TTATAACGTGTTTCTTTTTAAGACGGGGCCCGGTGATCATCTATCTCCCT
GCAATAATCTTTTTCAGGTTTTGACTGGCATGTCAGGCAAAAAGAAGACA
TAATATAGATGTTGTAAGGCCGCAGCGTTTTGATGTATTGTTCATTTTGT
TGGAAATACTGCTTGGCGCGTTTTTTCCTGAGCACTGTTCTGTGTACCTC
CGTGTTAAGAGGCAGTTTTCTCCTCTGCACAGTAGTGTCGGGAGAGAAAA
ATAATAACAACAACAGCCGGGTGTTGATGGTGTGGTCGTTCAGGGGCGAT
CAGCCTGAGCCGCGTTTATGCTGGAAACCCAACGTCCAGCATGTGCGTGC
AGGGGACGGGGGTTGATTATTTTGGTTCATCACACGCTCTCCGCGTTGAA
CTCTACGTTAAGTAGGTAGCGTAACAGAGAGAGAGGGAGGCTTGCTTGCA
TCGACCCCTTTTGAGTCAAAATTAGTAGAAGAGGGCAATCGGACAGGGAG
GAAGAAGCGGTTCGCCGCAATCCAAGATGCTGCGTTTTTTAGGTGGTTTA
GTTTTACCGACTGTCATTGCTGCTGACATATTTCGAAGCATTACATGAAA
AACAGGACATCGCCGTTTTGTTTGATACTTATAATAATTGGTGTGTGTGT
GTGTGTGTGTTTATTTTTTATTTTTGCAACTTTAGCGTTGTCTCCTCCGT
CATAGATGGGAAAACAGAGTACAGCAAGAAATTAAACTCAAATCCCCTCA
ATCGTGGCGTAACATGGATCGAGGGAAAGCTGTTGTGCCCCGCTACTGTT
CTTCTAGCTCTACACAAAAAAAAAAAATACTACTGTATCCTACGCCTTTA
GCTGCCGATGCCCGACGAAACAACCGCCGGGGTGACAGCTGATCGGCACA
GATGTACATTATTTTTCCTTGTCCTATAAAGCCGAGAAATCGGCGAGCTG
CGGGAGTGCCGAACCCAATGCGCGATAAAAAACAAAGAAAGGTAGGAACC
GGGGATAAGATAAGATAAGAGACAAGGGATTATAACCCTTGTGGCCACAG
ACGGACCTCGGAAAAGCCGGTATATCATACTAACATTAGTATGTGCGCAA
AATGCAGGGGGTCTCGCAATTGCACAGGTGGAAGGTGGGTACCCCCCCCC
CCCCTGTTTTGGCCGCTTATTCCAGTTTTACAATCAACACTAAACTAGGT
ACATTTTATGTTAACCAACGGTAGCGACCGCAACCCACGCCCGACATGAC
CCTTCAAGGGCTCTCAGAGGGACGTTTTGCCAGTCTCTCAAGCGCTTACA
TGTTATACTATATGCATGCATATGAGTTAGGTGATCTTCGACGAATGAAT
CTTCCTGTACCTACGCAAGACACCGCGCACGCCTCAGGGGTTTCCATGGA
GGGGATGGAGCTTGTATGCACCCCCTACCCCCTCTCCCCCCGCGCGCCCC
CCAGAGACCAAAGTAATTCGCTTAAACAAAAAATAATTTAATGGAATGAG
ACACTGATACTCCGGCTCCCCCCCCCCCCCCCGCCGCCGCCGCCGCTTGT
ACGTGCGCGCGCTGAAAACAAATCCAGGACGTCATCATCGTTAGACCAGG
GTGGGTTGTGGAGAGTTGCAGGAAACGGCGGAGGCTACCGTGCGAAGACT
TCGCCCTCCCTCCTTTTGAGGGCCTACGAGTCACCGTCACCGGCCTTCCC
ATGGGTGAGGCATACATCGGGCAGCGCGCGGGGGGCGGGGGTGTACTTAC
TCATGTTAAACGCGTGTCGTATCCAAACGGACATAGACCACGCATCCCAA
CAATGCCGGGATGGAGCGATACGCAGGGGTTTCGCCGGCCAGGCTGCGTT
CCACAAGGATGATGCCAGCTGCTGGCCATCACCCTTGCGTTTGCGACGCC
AAACGATATGCCATGGGTTGGATCGACACACCGGGTAACCAAATGTTGCT
CTTTCAGTTGGCGTGGCTTTACTCCATTTACCACAAAAGGACTCTGATCT
CCGTGCGAATGCAAAAGCACCGCACACACACAATATAGACGACGGTAGAT
GTGTGATACGCTCTGACTACAATCTGCTCATGAGTATTCCTGGCGGCGTA
ACGATCGTAAGTCAATGGTTGCTCTAGGGCGTTCCAGCAATCCAATGTTC
GGCAGGTCTCGTATAGGATATGACGCGTTTCGCCCGTTTTGGGCAGAGAC
TCACGTTTTCGTGAGTTTTTTCTCGTTCGATAGAAACGACCGTAATCAGA
AGTCTACTTCTGCAACGCACAATAGCCGCCCCTGGTACTTACTGTGGTAC
AAGGAACAAGATATAGTACCCCAGATATATACTATTAATAGTGTAGAAAA
TACATGTACTATTAATAGTATAAATATCATGTATGCTATGAATAGTAAGA
AAAACGCCAGAAAAGGAATCGGAATCGGGAAAATGCCCCCTCGCCTACAG
CTGCATACACTACACCCTCCCCCCACCGCCCTCCCGTACGTGCGCGGATC
GGGCAGATCGGAAGGAGGAGTTGCGAGAGATGATCCAGACCGGCGGAGGC
GAGTACATGGGAGCCATGGAGCTTCACCGCACCACTCACCTGGTTGCCGA
GGTACTTTTACCCGATTATAACTGAGTCTATAACTATATAGTATGTAGTA
TGTAGTATATAGTAATAGAGTATGTAATCTGTAGCACAGTGTGTATAGTA
TGTACTACATAAGTGTTTGCCCCGAATGTCGTCACTACAATACGGGTACT
GTATTTCGCCGTCACGGGTGAGTACACAGAGTATGGAGTATATAGTGTAT
AGCGTATAGTTTATAGTGTATAGCATATACTATATAAAAATGTAGTTTTT
GCGCCGAACTGCGGGTTATATGGCGGGTGACGGATGCACACACAAGCGCA
CCACCACCCGTGTATGAGAGCTAAAGCCGCGGCAGGCTTTATCGTCTATT
TTCCACCGCCACTTATTTCTTGTACCATAGTAAGTACCAGGGGCGGTACG
ATGTATAGTAGAAGTAGAGCTCTGATTAGTTATTTTTTTTTTTTTTTCTT
TGCGTGTCTGACCACAAGTCTGGTCGGATTAAGCCGATCGGCTATACGTG
TGCAAAAAAAGACAAAAACAAAAAACTAAAACTAATTATTAAATACTCCG
TACTAAATACTACCGGCGAGGAGTCGCCACCTGTTTGGGCACACTGCTGT
CGAATGTGAAATACGGTCCGGGCAGGTAAGTAGGTGGCTCTGAGAACAGG
CTCCATCCCAAAAGGGGCTTAAATCAATACTCTGTGTGATACAGTACAAC
CACAAAAAGCTAAAACTGCAAATATTATGCCAATCTCAAACGGGTAGATT
CGAGGAGAGATTCGCGGAGACGCATAGCCGCTGCTTCTCCCCTACTCTTG
CGATTTACACGCACGGTGGCCTTTCGGGTATGAGAGAGAATTCCCGGAGG
TTAAAAAAACATGCTCTCGTTTTTTGTGCGTGGGCGAAGTCTTGGGTCTC
GAGAATTGCATCGTGATTGCGCGGGGGGCGGGGGGGGGGGGGGGGGGGGG
GGCTCCCTCCCCTGTCTCACCCGCCGGCCCTCCCCAAGCTGCCGGGCGCG
GCGACGGTCTCNNNNNNNNNNGTGTGTTCTTTTGTGGTGTGATGTGTTGC
GGGGGGGGGGGGTGGTGGGTGGTGGTTGGGGTGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGCGACTGCCTTCCATTCGAGTACCACGACGTC
GACCAGTACTGCGTGCGAGTACGACGATCTCCTTCTTCGTAATGGGTGGC
CGTTCCATCTCTATTGCGCAATACGCGGGAGTGTATAGTGTATAGACTAG
AAGCAAGGATGAGCAGAATATTCCATTCGCAGAGTTACGTTTTAATTGTA
TTGTAGTGCCACACCCCCTACCCAGAGAGTAGAGTACCATGTATACAATC
CCACAACACCGAACATAGCGTAAACCTCCACTGAGTAGCTTGGGCCATCT
CTTCTCTTTTCCATTACAAAAAAGATTGGACCCCAACGTTCGCTCTTTGT
TTTATAAATATTTTAGTGTTTTCAGGGGGGGGGGGGGGGGGGGGGCACTC
CTTTTTTTTTTTTCTACTTTGGAAATGGCCCGGAAGAGAAAATTGCCCAC
CCCAAGATCGNNNNNNNNNNAAAAAGTTATATGACGAATCTCGTGGGGGG
GGGAGGGGGGCACTCCTATTTTTTTTTCCCAACTGCGAAATGGCCCGGAA
AGAGAAACTCGCCCACCCCCCTGCCCCACCCACCCCACCCCACTCACCCA
CCCACCCCCTCCACCCGAAGGTTGCTGCCGGCGCGAAGTACGAGGCGGCC
ATCAGCGCCGCGTGGAAAGACTCCATCAGCGTTGTGCACAGCCGTTGGCT
CGAAGAGAGCCACTGTCGAAGGGGTGAGCTTTGGCCGTCGTGATATGGCG
CCGTACTTGTGTGTGGGGGGTGGGTTGGTTGGTGGGTGGGTGGTTGGGTG
GGGTTGTGTGGGGGTGAGAGTGCGTGCGCGTTTGACCTCTAGCAGGAACG
GGCAATGATGGTGATCATGATAATGATGATGGCGAAATAGCGATGCTCCC
GTGCTCTTCAAACAATTTTTATTCCTGAAGTATCGAGCGAGAGCGTTGGG
GGTCCAGCTGTTTTTTAGGGAGGAAGTGGTGGTCCAGTCCAAGCTGTATA
TATTGTATATACGCATGTGGAGGTTTACATTATGTAATGATGCTTATGTG
GTTTACGCTTGGTAATGACACTATGGGATCATTGTGGAAATGGTTTTTGT
CTGCACGATAGTAGCCCCCCCCCACGGGGGAAATGGGAACTTTCATCAAT
ACTGGCGAGGCGTTTTTCGAAAACAGGAATTTTTTTCGTGTCCCCCTGTT
TTTTACTGTCAAGGCTGTCTGTCAAGGCGTTTTGGAAATTATTGTCTGTG
CTCAACTCTTGTTGACCGACATCTTTGTAGCCCCCATGCTCCGTTTCGTG
TCGTATCGATCCGTTCCGTTCCATTCCTTTCCGTGCGTGTGCATTACGCG
TTTTTTTTTTAACAAAAACAAAACCTGTACTTGTATTCGTGACGCCCCCC
CCCCCTCCCCTTTCCACCAGTTCGGCTGCCAAAGGAAATATTTCCGGTGT
CACCTCCGCCGCCACCATCACCTCTTCCGCACGAAGATGGGCAGACGGAG
GAGGACGACGACTGCGACGGCCTCGACGAAGAAGAAGAAGATCATCCGGG
CGATGACGACGAACAAGAAGAAGAGGATGGAGACGAAGACTATGACGACA
AAGAGGAGGAGGACGGCGGACCGGGCGGCGGCGGCGGCGGCGGCGATGAA
AAAGATAATGGCGGCGACGAAACCCCGCCTCAAAATATCCCCGGCCGAAC
ACAGCACCGCCACCAGCACAAGCGCCAACGTCGACCTCGACCCCACTCTG
GAGCGGACGCTGCGGCATCATCAACAGTGGCCGCCGCGCCAGCGGCGCCT
GCTGCAGCCAGCAACGCTGCTCCAACGCCAACTCCACAGCCCGTCGCCAC
GAACGCGGACGCCCCCGATCGCTCGCTTTACCCCTGGGCCGGCGACGCCA
GCGAAGATGCGGGGGGTGGAAACCCCGGTGCGTTGGATGGGAACGGTCAC
GGTGGAGGTGGCGGCGCGACAGAGGGGGTTCCTACCAAGGCTGAGGCGTT
GGCGCTGCCGGACGGCCGTTACCTATCAGGGTGTCGCATGATGCTGGTGG
GGTTTGCCGCGGAGGCGTTGCTGCCGCTGTCGCTCTTGATCCGCAAGGGG
AGCGGGGTTAGGTGAGGAGGATTGGTCGCCATGGCGGAGGAGATGGGGGG
GGGGGGGGCACACATGGAACGTTTCATTTGCAGAGTTACGTTTTGATTGT
ATTGTCGCGCCACACCGCTACCCAGAAAGTAACATTTGTACCATACACGC
ATGTGCAGAGTCTGTAAATTGTCGGCGAGAAAATTAACATACAACACACG
CGCACACAAACACACATGCATGGACACAAACACACATGCATGGACACAAA
CACACATGCATGGACACAAACACACATACATGCACGCACGCACTCTCACG
CCAACAGCCGCGTTTTTGTTTCCCCTTTCTCGCAACAACCGCAACACTGC
TAAAACACGCAGATACGCGTCTCCGAACGAGGAGCTAACGCACGTCGTCA
TGGGCGACCGGGCTCTGGCCAAGCCCGAGCTGGTGGCTGCCCTCGAGCGG
CACCCCTGCACGCCCCCCGTGGTGCACGCCTCCTGGCTATTGGAGACGTG
TCGTGCGGGGCGCGTTCTCCCGACGGAAGGGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10209:264..7247+

>mRNA_S-dermatodea_contig10209.150.1 ID=mRNA_S-dermatodea_contig10209.150.1|Name=mRNA_S-dermatodea_contig10209.150.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1608bp|location=Sequence derived from alignment at S-dermatodea_contig10209:264..7247+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGGGAAGCTTCGACGCGAGCCTCACCACCAATACCACGCACCTCGT
CGCGGACGGCTTCGACACCGAGAAGTACCGCGTCACCGCAAGATCCATGG
AGATGGGGGGAAGCTTCGACGCGAGCCTCACCACCAATACCACGCACCTC
GTCGCGGACGGCTTCGACACCGAGAAGTACCGCGTCACCGCAAGATCCAT
GGAGGACGTCATCATCGTTAGACCAGGGTGGGTTGTGGAGAGTTGCAGGA
AACGGCGGAGGCTACCGTGCGAAGACTTCGCCCTCCCTCCTTTTGAGGGC
CTACGAGTCACCGTCACCGGCCTTCCCATGGGACGTCATCATCGTTAGAC
CAGGGTGGGTTGTGGAGAGTTGCAGGAAACGGCGGAGGCTACCGTGCGAA
GACTTCGCCCTCCCTCCTTTTGAGGGCCTACGAGTCACCGTCACCGGCCT
TCCCATGGATCGGAAGGAGGAGTTGCGAGAGATGATCCAGACCGGCGGAG
GCGAGTACATGGGAGCCATGGAGCTTCACCGCACCACTCACCTGGTTGCC
GAGATCGGAAGGAGGAGTTGCGAGAGATGATCCAGACCGGCGGAGGCGAG
TACATGGGAGCCATGGAGCTTCACCGCACCACTCACCTGGTTGCCGAGGT
TGCTGCCGGCGCGAAGTACGAGGCGGCCATCAGCGCCGCGTGGAAAGACT
CCATCAGCGTTGTGCACAGCCGTTGGCTCGAAGAGAGCCACTGTCGAAGG
GGTTGCTGCCGGCGCGAAGTACGAGGCGGCCATCAGCGCCGCGTGGAAAG
ACTCCATCAGCGTTGTGCACAGCCGTTGGCTCGAAGAGAGCCACTGTCGA
AGGGATGCGGGGGGTGGAAACCCCGGTGCGTTGGATGGGAACGGTCACGG
TGGAGGTGGCGGCGCGACAGAGGGGGTTCCTACCAAGGCTGAGGCGTTGG
CGCTGCCGGACGGCCGTTACCTATCAGGGTGTCGCATGATGCTGGTGGGG
TTTGCCGCGGAGGCGTTGCTGCCGCTGTCGCTCTTGATCCGCAAGGGGAG
CGGGGTTAGATGCGGGGGGTGGAAACCCCGGTGCGTTGGATGGGAACGGT
CACGGTGGAGGTGGCGGCGCGACAGAGGGGGTTCCTACCAAGGCTGAGGC
GTTGGCGCTGCCGGACGGCCGTTACCTATCAGGGTGTCGCATGATGCTGG
TGGGGTTTGCCGCGGAGGCGTTGCTGCCGCTGTCGCTCTTGATCCGCAAG
GGGAGCGGGGTTAGATACGCGTCTCCGAACGAGGAGCTAACGCACGTCGT
CATGGGCGACCGGGCTCTGGCCAAGCCCGAGCTGGTGGCTGCCCTCGAGC
GGCACCCCTGCACGCCCCCCGTGGTGCACGCCTCCTGGCTATTGGAGACG
TGTCGTGCGGGGCGCGTTCTCCCGACGGAAGGGTAAATACGCGTCTCCGA
ACGAGGAGCTAACGCACGTCGTCATGGGCGACCGGGCTCTGGCCAAGCCC
GAGCTGGTGGCTGCCCTCGAGCGGCACCCCTGCACGCCCCCCGTGGTGCA
CGCCTCCTGGCTATTGGAGACGTGTCGTGCGGGGCGCGTTCTCCCGACGG
AAGGGTAA
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