mRNA_S-dermatodea_contig12332.1467.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12332.1467.1
Unique NamemRNA_S-dermatodea_contig12332.1467.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12332.1467.1 vs. uniprot
Match: D7FPT2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPT2_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 7.480e-59
Identity = 95/131 (72.52%), Postives = 107/131 (81.68%), Query Frame = 1
Query:   25 GVLPKGRALVPGCGRGYDTIALGKSGYDSTGLDLSPTGIEQATRLLAEETE-DLKGK-----------VSFQSGDFFKFTAEDQGQFDVIVDYTFLCALDPSVRNDWADHMVSLLRPEGELVTVIFPIMEK 381
            GVLP GRALVPGCGRGYD+IA GKS YDS GLDLSPTG+EQA  LLAEE E D+ GK           V F+SGDFFKF+ E +G+FDVI+DYTFLCALDP+ R+DWADHMVSLLRPEGELVT+IFPI+EK
Sbjct:   45 GVLPTGRALVPGCGRGYDSIAFGKSSYDSIGLDLSPTGVEQAKALLAEEKEEDISGKARQELGKPLSVVEFRSGDFFKFSPEQEGKFDVILDYTFLCALDPAARDDWADHMVSLLRPEGELVTIIFPIVEK 175          
BLAST of mRNA_S-dermatodea_contig12332.1467.1 vs. uniprot
Match: A0A836CD04_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD04_9STRA)

HSP 1 Score: 153 bits (386), Expect = 3.080e-44
Identity = 77/125 (61.60%), Postives = 90/125 (72.00%), Query Frame = 1
Query:   31 LPKGRALVPGCGRGYDTIALGKSGYDSTGLDLSPTGIEQATRLLAEETEDLKGKVSFQSGDFFKFTAEDQG-QFDVIVDYTFLCALDPSVRNDWADHMVSLLRPEGELVTVIFPIMEKVRATNAP 402
            LPKGRALVPGCGRGYD IA G +GYD+TGLDLS TGI+ AT LLAE      G V F  G+FF+F  +  G +FDVI+DYTFLCALDPS+R  WA  M +LL P GELVT+IFPI + +     P
Sbjct:   51 LPKGRALVPGCGRGYDAIAFGAAGYDATGLDLSKTGIQAATALLAETEPKPAGPVQFVVGNFFEFGGDGSGGRFDVILDYTFLCALDPSIRQQWAQRMAALLAPGGELVTLIFPIGKPLSEGGPP 175          
BLAST of mRNA_S-dermatodea_contig12332.1467.1 vs. uniprot
Match: A9V7J4_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V7J4_MONBE)

HSP 1 Score: 126 bits (317), Expect = 2.070e-34
Identity = 64/119 (53.78%), Postives = 78/119 (65.55%), Query Frame = 1
Query:   25 GVLPKGRALVPGCGRGYDTIALGKSGYDSTGLDLSPTGIEQATRLLAEETEDLKGKVSFQSGDFFKFTAEDQGQFDVIVDYTFLCALDPSVRNDWADHMVSLLRPEGELVTVIFPIMEK 381
            GVLPKGRALVPGCGR Y  +A  + GY +TGLDLS T +E+A ++L E    L+G+ +   G+FF+ T    G FDVI DYTFLCAL P  R  WA     LL P G L T+I+PI EK
Sbjct:    7 GVLPKGRALVPGCGRAYAVVAFAQHGYTATGLDLSETAVEEAQQVLEENRASLQGEATVALGNFFETT----GTFDVIYDYTFLCALHPDARAAWAQQHKKLLAPGGTLFTMIYPITEK 121          
BLAST of mRNA_S-dermatodea_contig12332.1467.1 vs. uniprot
Match: A0A6S9GED5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GED5_HETAK)

HSP 1 Score: 124 bits (310), Expect = 2.380e-32
Identity = 65/125 (52.00%), Postives = 82/125 (65.60%), Query Frame = 1
Query:   28 VLPKGR-----ALVPGCGRGYDTIALGKSGYDSTGLDLSPTGIEQATRLLAEET--EDLKGKVSFQSGDFFKFTAEDQGQFDVIVDYTFLCALDPSVRNDWADHMVSLLRPEGELVTVIFPIMEK 381
            +LPK       A VPGCGRGYD +AL ++GY   GLDL+PT +E A R L E    ++ +G  SF+ GDFF  +     +FDVI DYTFLCAL P +R  WA+ M S L+P GEL+T+IFPI EK
Sbjct:   78 ILPKSENGLSTAFVPGCGRGYDAVALAEAGYTVLGLDLAPTAVEAANRYLEEMNGIQNPEGACSFEEGDFFGVSQ----RFDVIFDYTFLCALPPELRKPWAEKMKSSLKPGGELITLIFPICEK 198          
BLAST of mRNA_S-dermatodea_contig12332.1467.1 vs. uniprot
Match: F2TX11_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TX11_SALR5)

HSP 1 Score: 118 bits (295), Expect = 2.190e-30
Identity = 59/121 (48.76%), Postives = 80/121 (66.12%), Query Frame = 1
Query:   22 TGVLPKGRALVPGCGRGYDTIALGKSGYDSTGLDLSPTGIEQATRLL-AEETEDLKGKVSFQSGDFFKFTAEDQGQFDVIVDYTFLCALDPSVRNDWADHMVSLLRPEGELVTVIFPIMEK 381
            T  LPKGRALVPGCGR Y  +   + GY + G+DL+ T ++ A   + + E +  +G +  ++ +FF+     +GQFDVI DYTFLCAL P+ R  WA  M  LL P+GELVT+IFPI+EK
Sbjct:   69 TNALPKGRALVPGCGRAYAPLEFARHGYQTLGVDLAHTAVKAAQEFVDSVEDKPKEGLLELRAANFFEL----EGQFDVIYDYTFLCALHPNAREKWAAQMHKLLAPQGELVTLIFPIVEK 185          
BLAST of mRNA_S-dermatodea_contig12332.1467.1 vs. uniprot
Match: UPI000441720C (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Punctularia strigosozonata (strain HHB-11173) TaxID=741275 RepID=UPI000441720C)

HSP 1 Score: 117 bits (292), Expect = 4.160e-30
Identity = 57/116 (49.14%), Postives = 79/116 (68.10%), Query Frame = 1
Query:   31 LPK-GRALVPGCGRGYDTIALGKS-GYDSTGLDLSPTGIEQATRLLAEETEDLKGKVSFQSGDFFKFTAEDQGQFDVIVDYTFLCALDPSVRNDWADHMVSLLRPEGELVTVIFPI 372
            LPK GRALVPGCG+GYD I + ++ GYD+   D+SPT +E A +  +     L   VSF+  DFF+++  D+ +FD+I DYTF  A+ PS+RNDW   M  L++P G L+T+IFPI
Sbjct:   52 LPKTGRALVPGCGKGYDAIFIAETLGYDTVAADISPTAVEAAKQHASSSPNGLPSNVSFEVIDFFRYSVSDEERFDLIFDYTFFVAILPSMRNDWGKKMRELVKPGGVLITLIFPI 167          
BLAST of mRNA_S-dermatodea_contig12332.1467.1 vs. uniprot
Match: A0A7S0M9S2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M9S2_9CRYP)

HSP 1 Score: 114 bits (285), Expect = 5.600e-30
Identity = 58/115 (50.43%), Postives = 80/115 (69.57%), Query Frame = 1
Query:   46 ALVPGCGRGYDTIALGKSGYDSTGLDLSPTGIEQATRLLAEET-EDLKGKVSFQSGDFF---KFTAEDQGQFDVIVDYTFLCALDPSVRNDWADHMVSLLRPEGELVTVIFPIME 378
            ALVPGCGRGYD +AL K G+++ G+DLS T +  A +L +  T  +L+G +S+ + D     K  A  + +FD+I DYTFLCALDPS+R  WA  M  LL+P+GELVT+I+P+ E
Sbjct:    9 ALVPGCGRGYDVVALSKCGFNAVGVDLSTTAVAAANKLSSTITVAELRGTISYYAEDILSPSKRGAVREKEFDLIYDYTFLCALDPSLRARWASTMKELLKPDGELVTLIYPLGE 123          
BLAST of mRNA_S-dermatodea_contig12332.1467.1 vs. uniprot
Match: A0A7S1HEK2_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HEK2_HEMAN)

HSP 1 Score: 115 bits (289), Expect = 2.890e-29
Identity = 56/120 (46.67%), Postives = 78/120 (65.00%), Query Frame = 1
Query:   22 TGVLPKGRALVPGCGRGYDTIALGKSGYDSTGLDLSPTGIEQATRLLAEETEDLKGKVSFQSGDFFKFTAEDQGQFDVIVDYTFLCALDPSVRNDWADHMVSLLRPEGELVTVIFPIMEK 381
            T    K RAL+PGCGRGYD +   +  +D+ GLD+SPT + QA +   +   +L G+  F + DFF  T  + G FD++ DYTFLCA+DPS R+ WA+    L++P GELVT+I+PI  K
Sbjct:   88 TAKAKKVRALIPGCGRGYDVVEAARFNFDALGLDISPTAV-QAAQAYRDSQGELGGRAEFSTTDFF--TLPEPGAFDLVFDYTFLCAIDPSTRSAWAETHKRLIKPGGELVTLIYPIRPK 204          
BLAST of mRNA_S-dermatodea_contig12332.1467.1 vs. uniprot
Match: A0A812N7E6_9DINO (HOL3 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812N7E6_9DINO)

HSP 1 Score: 115 bits (287), Expect = 4.580e-29
Identity = 61/114 (53.51%), Postives = 72/114 (63.16%), Query Frame = 1
Query:   43 RALVPGCGRGYDTIALGKSGYDST-GLDLSPTGIEQATRLLAEETEDLKGKVSFQSGDFFKFTAEDQGQFDVIVDYTFLCALDPSVRNDWADHMVSLLRPEGELVTVIFPIMEK 381
            RALVPGCGR YD IAL + G+DS   +DL+PT ++ A   L   +     K+     DFFKF  E +   DVI D TFLCALDPSVR DWA  M +LL P G L+T IFPI EK
Sbjct:   49 RALVPGCGRAYDAIALAEYGFDSVVAIDLAPTAVDAARDFLKASSSPAASKIEVACADFFKFELEPKA--DVIWDCTFLCALDPSVRTDWAKKMKALLNPGGTLLTCIFPICEK 160          
BLAST of mRNA_S-dermatodea_contig12332.1467.1 vs. uniprot
Match: UPI001E8DA34B (uncharacterized protein n=1 Tax=Aspergillus melleus TaxID=138277 RepID=UPI001E8DA34B)

HSP 1 Score: 114 bits (286), Expect = 4.760e-29
Identity = 59/122 (48.36%), Postives = 75/122 (61.48%), Query Frame = 1
Query:   37 KGRALVPGCGRGYDTIALGKSGYDSTGLDLSPTGIEQATRLLAEETEDLKGKVSFQSGDFFKFTAEDQGQFDVIVDYTFLCALDPSVRNDWADHMVSLLRPEGELVTVIFPIMEKVRATNAP 402
            K RALVPGCG+GYD + L   G+D  GLD+S TG+  A      E  + +G  +F SGDFFK   ED  +FD+I DYTFLCAL PS+R  WA  M  LL P+G LV + FP+ +  +    P
Sbjct:   53 KKRALVPGCGKGYDVVMLALHGFDVYGLDVSATGVSTAKEYARGELANPQG-YNFGSGDFFKSDWEDGMKFDLIYDYTFLCALHPSMRAQWASRMAGLLAPKGHLVCLEFPLWKDPKLPGPP 173          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12332.1467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPT2_ECTSI7.480e-5972.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CD04_9STRA3.080e-4461.60S-adenosyl-L-methionine-dependent methyltransferas... [more]
A9V7J4_MONBE2.070e-3453.78Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A6S9GED5_HETAK2.380e-3252.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F2TX11_SALR52.190e-3048.76Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
UPI000441720C4.160e-3049.14S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S0M9S2_9CRYP5.600e-3050.43Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S1HEK2_HEMAN2.890e-2946.67Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A812N7E6_9DINO4.580e-2953.51HOL3 protein n=1 Tax=Symbiodinium necroappetens Ta... [more]
UPI001E8DA34B4.760e-2948.36uncharacterized protein n=1 Tax=Aspergillus melleu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12332contigS-dermatodea_contig12332:5985..6888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.3
Seed ortholog evalue5.9e-46
Seed eggNOG ortholog2880.D7FPT2
KEGG koko:K21552
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006082,GO:0006790,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008168,GO:0008172,GO:0008757,GO:0009056,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0009987,GO:0016020,GO:0016143,GO:0016145,GO:0016740,GO:0016741,GO:0018708,GO:0019748,GO:0019757,GO:0019759,GO:0019760,GO:0019762,GO:0031967,GO:0031975,GO:0032259,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044248,GO:0044273,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0071704,GO:0071944,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1901657,GO:1901658
EggNOG free text desc.Thiol methyltransferase
EggNOG OGs28JNP@1,2QS1V@2759
EC2.1.1.165
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-18_001620.1
Exons3
Model size402
Cds size402
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12332.1467.1prot_S-dermatodea_contig12332.1467.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12332 5985..6888 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924244.0054133-CDS-S-dermatodea_contig12332:5984..61761622924244.0054133-CDS-S-dermatodea_contig12332:5984..6176Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12332 5985..6176 +
1694079120.2318268-CDS-S-dermatodea_contig12332:5984..61761694079120.2318268-CDS-S-dermatodea_contig12332:5984..6176Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12332 5985..6176 +
1622924244.0146267-CDS-S-dermatodea_contig12332:6449..65351622924244.0146267-CDS-S-dermatodea_contig12332:6449..6535Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12332 6450..6535 +
1694079120.2472112-CDS-S-dermatodea_contig12332:6449..65351694079120.2472112-CDS-S-dermatodea_contig12332:6449..6535Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12332 6450..6535 +
1622924244.0247476-CDS-S-dermatodea_contig12332:6764..68881622924244.0247476-CDS-S-dermatodea_contig12332:6764..6888Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12332 6765..6888 +
1694079120.2569392-CDS-S-dermatodea_contig12332:6764..68881694079120.2569392-CDS-S-dermatodea_contig12332:6764..6888Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12332 6765..6888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12332.1467.1

>prot_S-dermatodea_contig12332.1467.1 ID=prot_S-dermatodea_contig12332.1467.1|Name=mRNA_S-dermatodea_contig12332.1467.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=134bp
TLHPSTVTGVLPKGRALVPGCGRGYDTIALGKSGYDSTGLDLSPTGIEQA
TRLLAEETEDLKGKVSFQSGDFFKFTAEDQGQFDVIVDYTFLCALDPSVR
NDWADHMVSLLRPEGELVTVIFPIMEKVRATNAP
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mRNA from alignment at S-dermatodea_contig12332:5985..6888+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12332.1467.1 ID=mRNA_S-dermatodea_contig12332.1467.1|Name=mRNA_S-dermatodea_contig12332.1467.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=904bp|location=Sequence derived from alignment at S-dermatodea_contig12332:5985..6888+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCCTACATCCGTCAACTGTCACAGGCGTGCTCCCTAAGGGTCGCGCGTT GGTGCCCGGCTGCGGACGAGGCTACGATACGATTGCGCTCGGAAAGAGCG GGTACGACTCCACGGGTCTTGACCTATCTCCCACCGGAATAGAGCAAGCG ACAAGGTTGCTTGCTGAAGAAACGGAGGACCTCAAGGGAAAGGTGCCGTA CTACTAAATGAATTCCAAGCTCTCTGATGTTAGCGCCGCAGCCGCACTCC GCAGCCGGCGCCAGTGTATAGCTCTTCTACTGCATTCGACGTCTCGTGTG TGATGGCGATGATCGAAGAGAGACTGCACGCATGATAATTCGAGTGATTT CCTTACATCTGCCATGAGTGCGGCGACGAAATCGCGACCCAGCCCGTTCG GTCTGCCTCGGCCTTCTTCCTTACCGGGTATAACATTGCTCTCCTCTTGC TCTCCGAAAACGCAGGTTTCGTTCCAGTCGGGCGATTTCTTCAAGTTCAC CGCGGAGGACCAGGGCCAGTTCGACGTAATTGTCGACTACACGTTCCTCT GGTGAGAAACAAGGCCGCCTTGCTATAATATGAAAGAAAGTCATCGTTGC AGGATTAAACCAGGTCGGGGAAACCACGCCGAAAGTTGCGCCTGCACTTT GGTTTCTCGCTGAAAATGCAGCAGGTTGGGTTTCTAACGCGGAGGTCTCG ATGCAGATGCTTGACGAATCCAATCTCTAACCCTTAAGAGTGTGCCGTGT GGCTACCTGTCTTTCTTGCTGCTGTTACAGCGCGCTCGACCCGAGCGTCC GCAACGACTGGGCGGATCACATGGTGTCCCTGCTCCGCCCCGAGGGTGAG CTGGTGACCGTGATTTTCCCGATCATGGAAAAGGTGAGAGCGACGAACGC GCCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12332:5985..6888+

>mRNA_S-dermatodea_contig12332.1467.1 ID=mRNA_S-dermatodea_contig12332.1467.1|Name=mRNA_S-dermatodea_contig12332.1467.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at S-dermatodea_contig12332:5985..6888+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACCCTACATCCGTCAACTGTCACAGGCGTGCTCCCTAAGGGTCGCGCGTT
GGTGCCCGGCTGCGGACGAGGCTACGATACGATTGCGCTCGGAAAGAGCG
GGTACGACTCCACGGGTCTTGACCTATCTCCCACCGGAATAGAGCAAGCG
ACAAGGTTGCTTGCTGAAGAAACGGAGGACCTCAAGGGAAAGACCCTACA
TCCGTCAACTGTCACAGGCGTGCTCCCTAAGGGTCGCGCGTTGGTGCCCG
GCTGCGGACGAGGCTACGATACGATTGCGCTCGGAAAGAGCGGGTACGAC
TCCACGGGTCTTGACCTATCTCCCACCGGAATAGAGCAAGCGACAAGGTT
GCTTGCTGAAGAAACGGAGGACCTCAAGGGAAAGGTTTCGTTCCAGTCGG
GCGATTTCTTCAAGTTCACCGCGGAGGACCAGGGCCAGTTCGACGTAATT
GTCGACTACACGTTCCTCTGGTTTCGTTCCAGTCGGGCGATTTCTTCAAG
TTCACCGCGGAGGACCAGGGCCAGTTCGACGTAATTGTCGACTACACGTT
CCTCTGCGCGCTCGACCCGAGCGTCCGCAACGACTGGGCGGATCACATGG
TGTCCCTGCTCCGCCCCGAGGGTGAGCTGGTGACCGTGATTTTCCCGATC
ATGGAAAAGGTGAGAGCGACGAACGCGCCACGCGCTCGACCCGAGCGTCC
GCAACGACTGGGCGGATCACATGGTGTCCCTGCTCCGCCCCGAGGGTGAG
CTGGTGACCGTGATTTTCCCGATCATGGAAAAGGTGAGAGCGACGAACGC
GCCA
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