mRNA_S-dermatodea_contig12314.1460.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12314.1460.1
Unique NamemRNA_S-dermatodea_contig12314.1460.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12314.1460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12314contigS-dermatodea_contig12314:822..4823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLPS-induced tumour necrosis factor alpha factor
Ec32 orthologEc-18_003300.1
Exons2
Model size555
Cds size552
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924243.539634-CDS-S-dermatodea_contig12314:821..11401622924243.539634-CDS-S-dermatodea_contig12314:821..1140Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12314 822..1140 +
1694079119.9478426-CDS-S-dermatodea_contig12314:821..11401694079119.9478426-CDS-S-dermatodea_contig12314:821..1140Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12314 822..1140 +
1622924243.54813-CDS-S-dermatodea_contig12314:4588..48211622924243.54813-CDS-S-dermatodea_contig12314:4588..4821Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12314 4589..4821 +
1694079119.956353-CDS-S-dermatodea_contig12314:4588..48211694079119.956353-CDS-S-dermatodea_contig12314:4588..4821Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12314 4589..4821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12314.1460.1prot_S-dermatodea_contig12314.1460.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12314 822..4821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12314.1460.1

>prot_S-dermatodea_contig12314.1460.1 ID=prot_S-dermatodea_contig12314.1460.1|Name=mRNA_S-dermatodea_contig12314.1460.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=184bp
HQRTTHKQHIHLHLPVPIAQLQQWRAKHQVSFKLHPTSNRSPANKATMPR
GNGYASLPDGNEDEEFANNGTESGQIAVSGSAEAAARGLATAADATAVSA
GGPQDGATVGAITDASVEKKSASGKQDQDLGGLPTAEGVYVGSPVPQSSY
SHVGGGGGGSAAGLQTQATVITTTPPSYNSHMVA
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mRNA from alignment at S-dermatodea_contig12314:822..4823+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12314.1460.1 ID=mRNA_S-dermatodea_contig12314.1460.1|Name=mRNA_S-dermatodea_contig12314.1460.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4002bp|location=Sequence derived from alignment at S-dermatodea_contig12314:822..4823+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACCAACGTACTACGCACAAGCAACACATACATTTACATTTACCCGTGCC
TATCGCACAACTACAACAGTGGAGGGCCAAGCACCAAGTTAGCTTCAAAC
TACACCCCACATCGAACCGATCCCCCGCCAACAAGGCGACAATGCCACGC
GGAAACGGTTACGCGTCCCTCCCTGACGGCAACGAGGATGAGGAGTTCGC
GAACAACGGGACGGAGAGCGGACAGATCGCCGTCTCGGGCTCGGCGGAGG
CTGCCGCTAGAGGCTTGGCTACGGCAGCAGATGCAACGGCGGTGTCTGCT
GGAGGCCCACAGGATGGAGGTAACAGTCGTTTGTTTTTTTGTTGAACGGC
AGAAGGGATGGGCGTCAAGAGCGTTTCCACCCGGGGTCGGGCGTGTTGAT
GACAGAGGGACGTAGAAGTACATACCGACTTGTACCAGTATATGTTATTC
ATATACTCGAAGTATTGAAACTATTATCAGACCACTGCTGAATGTATACG
TACAAGTAATTAGTGTTTGCAGTGCAGCAGTACAGAGTATCAGATGCTCA
TAGGGTGACCAGTGCACAAGAGAGTACGACGATACCCCACAGCAGGGTCT
ATGACACTACTGCTACAGCTGTACCTGCATTATGCATACTGGTACTCAGC
ATAGGGGTCTATATTAATACCTCATTTACTAACTCTGTAGTATAATATAT
AGTATGGTATGGGATCCTACTATCACTATAATACCTGGAACTCTTCTCTT
TACAGCAGCAGTACCATCGCGTGGGATGAGTGCTCCCAAGAAACAAGCCT
CGGTCTGCTTGTGTATGTCCATGTGTTTAGAACCGGACTCACGGGGGTGG
TTGGAGCGGCTTCGCCGTACTCTCGGGGTTGCAGAGCAGGGAAATGCCGC
AATTAGCAATTTGATGTGTGGCGAAGCCGCGCTAACCAGCTGAACTTGAG
CGGCACCGCCGATTTGCTGAAAACAGAGCCGGAACACATACAGGCACACC
ACTGTACTTGTATAATACAGTACCGCGATCAGTATGTACTTGTACTTATA
GCATGTCCCCTTGTTCAGGTACTCTGCACAAGGTTGATGCCGTTGCAGTA
CCCCGGACTACAGAAACATGGAAAAGGTACAGCTGTATCGCAGTGTTAAC
AGGTACCATGTATTATACCAAGTATTTGCAGGATGTAAGGTACAGCAGTG
CCTGAAATATTTCCCCGCACCATTTTTTCTGGCATAAGGTGCATGGTACC
TTATACTTGAAGTATCGGACATGACAGCGAACAACACAAGGTTTCTCGTC
ACACAATTATCGTCGCGAATAGCGTCGGTATCATGATAAGAGTTCTATTA
TAATAATAGTTATTGTCATGGACATCGCCCTGTTCACAAAGAGTCGTCCA
CAGGTACAGTATTAATTGTAGCCTTTGGTACGACGAAGCGAGGAGACGAG
CTGAGCCGCATCCTGCGTCTCCCCGCTCTTTGGAAAAATAAAAGTAAGCA
TGTGTGGGTACTACTGTTTGTACCCGGTCCTGGGTAACGTTCCCGGTTTC
CCGATTTTCACGTACGTCCCGTTGGACCACGTCAGACCTGACCTTGAAGT
ACACGTCGCGTTGTGTCACATCCCGATTGGGCGCCCCACCTGGACCAGTA
TGTCCTGGAGCCCACTCGGGGCCCTCGCACTTCGTGTATGATACCTCTGG
GATCTATTAATAAAATACAATTTTATTACTATCATACGAAGTACTTACTA
TTAATGATACCATATAGAACCCTCGTTACGTCACCACGCTATTACTATTA
CAGTATACCCATCAGGGGCCCACACATGTGATGGTTTTATTATGTTGTCT
TTGTCCAAAGTCCCTGCTACCCAGAGCGGGCTGCTCTTCAAGTTCAAATT
GCACACAGTATTAAATGGGCAAAGACAACTGCGAGACGAAGCAGACCGTC
TGCTTTCGGTAGCGTATTCTACACCGGTACAGGTACAGATTGCGTAACGA
CGTGACGACCTGCCCCGCACGGGCGATGGAGCATTACAATACACAGGGGT
GGGCACGGCGATAGGCCGAGACAAGACTACAAGTACATGAGGGGTATTCC
ACATTTCCCCCCGATTTAGTTCATAGCTCAGACGGTATCATAGTGGACCG
CCTACCACGGGCGCCAAGCTCCTTACGTACAGCGCCGGGGATGACGAAAG
ACCCCAAGGCATACGCCTCTGCATCGGGGGGAGAAACGGCGAGGTTACTC
TGTGCACTCTTGCCGCTCAAGAGGCGCTATCGAGCGAGCACTATGACAAC
GATCACTATCTGTACCCTACAAGTAGTGTTTTTGTGTTTTCCCACTACAA
TACTACGTGATGGAGGTCGGCGTGTCAGTCAGAGTCCAATCGGGGACCGC
TCCTTGTCCATCATCATGGAGAGAGCGTTCTGGAAACAACCCCGCTCCGC
ACAGCCTGGCGGTACATGAGGCTGATGAAAGTGTAAGTGTTTTAGTCTCG
CCAGGTTCAACGGGAACCTCGGACGATCAGAGGAGCGACACCAGCACCAG
CCCAGCAACAGAGATAGATTGACGAGATTTCCCTAAATAGGCGAATATGG
TAATTAGCGGGCAGCGTTCGGGAAGGAATTCCTCCAGTAAGGAACTCAAC
ACAACCGAGGAGAGCGCGGGATTTGATGGCCCGTGTTGGGATGATGACCT
CGGGAAAATAGTTATGTATCTCCGAATAGACCCGTCAGTGATGGAGGCGT
TGTATGACAGCGCTGGCCGCGGCAAGTGCGACCACCAGTTCATTCCATGC
TAGTTTTCTCTGGCAAGAAGCACTACATAACAGCTGTCCCCAGGGTGCAT
CAACAGTATTCACCGTGATATAAAAGACGACGAACGTCCCCCGAGTTCGC
GGCGCCTTCCTCAAAGGAACTCCTCGTCAAGGGTACGACGAGTCTCCTCG
GGGGGCCATTCCTAAAACCGCCCTCGCTCCCCAATACTGAGGACGGACAA
GCACGATTTTGGTTTAGCTGAGACACCACCCGTCCCTCCCCCATACAACG
CCCCCCCCCCCCTCCTGAAACAAGAAATATCTTACCGGTATTAATTAGTA
GCTCTTTGACCGATTTTCAATAGCGATTTAGAGTTGATTTCTGTAACACA
CCATCTAGACGATTTTGGGGATTTTGGGGGCCAAAATGTGATGCCAAACA
ACTTGATTTTAGAGTTGAACGACCACGCACACCTCACGGGCGTAGCTGTG
GCTACCTACTAGTTTTCTGACTGAGGGAGGAAATACGGTCCACCGCCCCC
CCCCCCAAGGAAGAGCAATTAGCCACCGGCGACCAACCCTGTGGAAACAA
TTATCCGTCCTCCTGACGACAGCGAAGGCATATCAAACTTCAGAACACCC
TCCCTCCCCCAGTGGCCTGAGAAAGCGATAAGTGGTGTAACTTACAGCAG
ACAGGATAGGAAAATCGTTTTTGCCGCCACCTTGGCGAGAGTAAGGACGC
ATGGTCAATGGTCTAACAGCTAAGGCTTGCAAAACATGAGTACGACCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NNNNNNNNNNAAAAGGTTTTTCGCCCCTCCTGGCGGCGAGAGGGGAGGAA
GGGCAAGGGGTCAAAAGGCAAGGAGCTAAAACCATGAAAACGCCCCCCCC
CCCCCCCCCCCTCCCCCCCCCCTTCCCCTTCCCCTTCCCCGCCCCGCCCC
CCGGCCTCCCAACACAGCCACCGTCGGCGCGATAACGGACGCGAGCGTCG
AAAAGAAGAGCGCCTCGGGCAAGCAAGATCAAGACCTAGGGGGTCTACCG
ACTGCGGAGGGTGTGTACGTCGGGTCACCCGTTCCCCAATCCTCCTACTC
TCACGTGGGGGGCGGCGGCGGCGGGTCGGCGGCGGGCTTGCAGACGCAAG
CCACCGTCATCACCACCACGCCTCCATCTTACAACTCCCACATGGTAGCG
GC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12314:822..4823+

>mRNA_S-dermatodea_contig12314.1460.1 ID=mRNA_S-dermatodea_contig12314.1460.1|Name=mRNA_S-dermatodea_contig12314.1460.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1104bp|location=Sequence derived from alignment at S-dermatodea_contig12314:822..4823+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACCAACGTACTACGCACAAGCAACACATACATTTACATTTACCCGTGCC
TATCGCACAACTACAACAGTGGAGGGCCAAGCACCAAGTTAGCTTCAAAC
TACACCCCACATCGAACCGATCCCCCGCCAACAAGGCGACAATGCCACGC
GGAAACGGTTACGCGTCCCTCCCTGACGGCAACGAGGATGAGGAGTTCGC
GAACAACGGGACGGAGAGCGGACAGATCGCCGTCTCGGGCTCGGCGGAGG
CTGCCGCTAGAGGCTTGGCTACGGCAGCAGATGCAACGGCGGTGTCTGCT
GGAGGCCCACAGGATGGAGCACCAACGTACTACGCACAAGCAACACATAC
ATTTACATTTACCCGTGCCTATCGCACAACTACAACAGTGGAGGGCCAAG
CACCAAGTTAGCTTCAAACTACACCCCACATCGAACCGATCCCCCGCCAA
CAAGGCGACAATGCCACGCGGAAACGGTTACGCGTCCCTCCCTGACGGCA
ACGAGGATGAGGAGTTCGCGAACAACGGGACGGAGAGCGGACAGATCGCC
GTCTCGGGCTCGGCGGAGGCTGCCGCTAGAGGCTTGGCTACGGCAGCAGA
TGCAACGGCGGTGTCTGCTGGAGGCCCACAGGATGGAGCCACCGTCGGCG
CGATAACGGACGCGAGCGTCGAAAAGAAGAGCGCCTCGGGCAAGCAAGAT
CAAGACCTAGGGGGTCTACCGACTGCGGAGGGTGTGTACGTCGGGTCACC
CGTTCCCCAATCCTCCTACTCTCACGTGGGGGGCGGCGGCGGCGGGTCGG
CGGCGGGCTTGCAGACGCAAGCCACCGTCATCACCACCACGCCTCCATCT
TACAACTCCCACATGGTAGCGCCACCGTCGGCGCGATAACGGACGCGAGC
GTCGAAAAGAAGAGCGCCTCGGGCAAGCAAGATCAAGACCTAGGGGGTCT
ACCGACTGCGGAGGGTGTGTACGTCGGGTCACCCGTTCCCCAATCCTCCT
ACTCTCACGTGGGGGGCGGCGGCGGCGGGTCGGCGGCGGGCTTGCAGACG
CAAGCCACCGTCATCACCACCACGCCTCCATCTTACAACTCCCACATGGT
AGCG
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