mRNA_S-dermatodea_contig1230.1450.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1230.1450.1
Unique NamemRNA_S-dermatodea_contig1230.1450.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1230.1450.1 vs. uniprot
Match: A0A6H5L6U3_9PHAE (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6U3_9PHAE)

HSP 1 Score: 368 bits (945), Expect = 1.160e-120
Identity = 254/447 (56.82%), Postives = 304/447 (68.01%), Query Frame = 1 
Query:    1 GVAGLEMETLKGCGCVLVTLKAGDHIKADPRCIVSRGTGLALRPKDKPDEGRLLQGLKRKLLKKI-GQEQH---------QNQLQTLSNTMSSNATDCLLAPPFPGDIALVSVERGT-DANPPDTGKRPRTNTGRIAGRAATDSRSRRSRAPSTGRRKEQPEPRGR---GTEPRTFVLLTQALVAVGPEVTVTPMP------AGGQTPSGLLAKKSGRSN----TGALSLCEGQGPIAVAGYGRLKKLRLRAGQRRIVDSTRAVGWTSSVTRLS-SWGRAS------GSSAENPS-AVTSFVGPGVVYLQTHSLAGLRRLLLPKAGFYPQGAV-SGFRGAGRAGRGA-GASRGAE--VGLSLKRGLAKRAKAGAKRVILALAFFALYVLVYSLATALLLEGREGLGNAPRHALQVVRSLSKVARRVVMVLLRLGQEELWGKEGDDQG 1233
            GV G+EM  +KG GC+ VTLKAG+HIKADPR IVSRG GLALRP    ++  +L GLKR+L K   G++ H          ++L+ +SNTM+SN TDC +APPFPGD+ +VSV  G  D +  + GK             A     R++R    GR  ++P  RG      +PR  VLLTQA+VAVGP V V P P       GG   S L  ++  R      TGALSLCEGQGPIAVAGYG+LKKLRLR GQ+R+VDS+RAVGWTS VT L+ + GRAS         A +P+ A T+FVGPG VY+QTHSL GLRRLLLPK+G   QG V SG   AGR G GA  A RG    VGLSLKRGLAKRAKAGAKRV LA+AFFALY++VYSL TALLLEGR+GL NAPRHA+QVVRSL+KVARRV +VL+RLG+EELW +EG+  G
Sbjct:   48 GVMGVEMIEVKG-GCLQVTLKAGEHIKADPRYIVSRGVGLALRPPAPLEKQGILGGLKRRLRKAAQGRQDHXXXXXXXRDNHRLERVSNTMASNETDCFVAPPFPGDVVVVSVSSGGGDESVGEDGKDYDD---------AHGGDRRKARQRREGRSGDRPAARGSRHGSVKPRKLVLLTQAIVAVGPGVVVKPSPRPDAAGVGGLGGSSLSRRQQQRGGPVVTTGALSLCEGQGPIAVAGYGKLKKLRLRPGQKRLVDSSRAVGWTSGVTCLTGTGGRASVPTTGNNIGANSPAGAFTTFVGPGTVYVQTHSLPGLRRLLLPKSGVPLQGEVPSGLLEAGRRGAGALFAPRGGPPTVGLSLKRGLAKRAKAGAKRVSLAVAFFALYLVVYSLVTALLLEGRDGLANAPRHAVQVVRSLAKVARRVAVVLVRLGREELW-REGEGGG 483
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1230.1450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6U3_9PHAE1.160e-12056.82Altered inheritance of mitochondria protein 24, mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1230contigS-dermatodea_contig1230:12901..14865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial biogenesis protein AIM24
Ec32 orthologEc-10_006230.1
Exons2
Model size1233
Cds size1215
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1230.1450.1prot_S-dermatodea_contig1230.1450.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1230 12901..14847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924242.7629626-CDS-S-dermatodea_contig1230:12900..140701622924242.7629626-CDS-S-dermatodea_contig1230:12900..14070Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1230 12901..14070 -
1694079119.3657267-CDS-S-dermatodea_contig1230:12900..140701694079119.3657267-CDS-S-dermatodea_contig1230:12900..14070Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1230 12901..14070 -
1622924242.771867-CDS-S-dermatodea_contig1230:14802..148471622924242.771867-CDS-S-dermatodea_contig1230:14802..14847Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1230 14803..14847 -
1694079119.3775625-CDS-S-dermatodea_contig1230:14802..148471694079119.3775625-CDS-S-dermatodea_contig1230:14802..14847Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1230 14803..14847 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924242.7800128-UTR-S-dermatodea_contig1230:14847..148651622924242.7800128-UTR-S-dermatodea_contig1230:14847..14865Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1230 14848..14865 -
1694079119.396797-UTR-S-dermatodea_contig1230:14847..148651694079119.396797-UTR-S-dermatodea_contig1230:14847..14865Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1230 14848..14865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1230.1450.1

>prot_S-dermatodea_contig1230.1450.1 ID=prot_S-dermatodea_contig1230.1450.1|Name=mRNA_S-dermatodea_contig1230.1450.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=405bp
METLKGCGCVLVTLKAGDHIKADPRCIVSRGTGLALRPKDKPDEGRLLQG
LKRKLLKKIGQEQHQNQLQTLSNTMSSNATDCLLAPPFPGDIALVSVERG
TDANPPDTGKRPRTNTGRIAGRAATDSRSRRSRAPSTGRRKEQPEPRGRG
TEPRTFVLLTQALVAVGPEVTVTPMPAGGQTPSGLLAKKSGRSNTGALSL
CEGQGPIAVAGYGRLKKLRLRAGQRRIVDSTRAVGWTSSVTRLSSWGRAS
GSSAENPSAVTSFVGPGVVYLQTHSLAGLRRLLLPKAGFYPQGAVSGFRG
AGRAGRGAGASRGAEVGLSLKRGLAKRAKAGAKRVILALAFFALYVLVYS
LATALLLEGREGLGNAPRHALQVVRSLSKVARRVVMVLLRLGQEELWGKE
GDDQG
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mRNA from alignment at S-dermatodea_contig1230:12901..14865-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1230.1450.1 ID=mRNA_S-dermatodea_contig1230.1450.1|Name=mRNA_S-dermatodea_contig1230.1450.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1965bp|location=Sequence derived from alignment at S-dermatodea_contig1230:12901..14865- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGTGGCAGGCCTGGAGATGGAGACGCTCAAAGGGTGCGGCTGCGTCCT
GGTCACTTTGAAGGTGCGTGAAACCTGTGCTACGGTGGGTTCGTCTGTTG
AATACTTGTATCTGTGTGTGTGTTGATCGCCGACTCGGTGTGCTTTGCTT
TGGCACGATAGCTGTGATACGCGCGCGTGAAAAAGGGTGGACATTATATT
ATATGGCGCTGCATACTGACTCTGCTGTGTCCAGCGGTGCAAGTTGTCGG
CATACTCGCTCTCTCAGATAGGAATGATGGTTTGATATGGGGATGGATGT
TGAGAATATCATATGATACCTCAAAGGAAGAAGACCCCTAATCAAAATCA
GATAGTATTTTACAGTAAGTTACTACAGAGTGACTGTTACCTTTGGAAAG
AGACGCCATCTGTTTTCAAAGGTATTCTGAGTTGGGGATGTACATGGGAA
CTAGTTTTTTTTTTATAGAGCTCTAGAGCTCTACAGCTGTAGGTACCTGT
ATTACCACTTCCTGTAATATCAAGACGCGTATTAAATGACCACCATACGA
GGATGCGAGCAGGATGCCAGGAGCGTGTTTTACGTTTTTACGTGTGACAC
GATAGATATGCACACTAGCTCTTCGTGCACAATGGGCAGCTTTGGACTTA
TCTCTCGAATATGCCATGAATGTGTTATTATTATCTCGCCCCCAACCTCG
GCACAATGGGCAGCAATCCAGCATTCTGCGAAAAACAAACCGCCGATCCC
GGAAGTTCACCGACCCTATACAATACACTCCCACCGATCCCTCAGGCTGG
CGATCATATCAAGGCGGACCCTCGGTGCATCGTCTCGCGCGGCACCGGCC
TGGCGCTCCGTCCGAAGGACAAGCCAGACGAAGGACGCCTGCTGCAAGGG
CTGAAGCGGAAGCTTCTCAAGAAAATCGGGCAGGAGCAGCATCAGAACCA
GCTACAGACCCTGTCGAACACCATGTCTTCAAACGCCACAGACTGTCTCC
TAGCCCCGCCTTTCCCGGGCGACATCGCACTAGTCTCCGTAGAGAGAGGC
ACGGACGCCAACCCACCGGACACAGGCAAACGGCCGCGAACAAACACGGG
GCGCATCGCTGGAAGGGCTGCAACGGACAGCCGCAGTCGCCGCTCGCGAG
CGCCGTCCACGGGCAGACGAAAGGAGCAGCCAGAACCGCGGGGACGCGGT
ACCGAGCCGCGAACATTCGTGCTGCTGACGCAGGCTCTTGTTGCGGTTGG
CCCTGAAGTTACCGTTACGCCCATGCCCGCGGGGGGGCAGACGCCATCCG
GCCTGTTGGCTAAAAAAAGTGGCCGATCGAACACGGGCGCGCTCTCCCTC
TGCGAAGGACAAGGGCCGATCGCTGTGGCGGGCTACGGACGACTCAAGAA
GTTACGGCTTAGAGCTGGGCAGAGGCGAATCGTAGACTCCACTCGCGCGG
TGGGGTGGACGAGCAGCGTAACTCGCCTTTCAAGTTGGGGGCGCGCCTCC
GGGAGTTCCGCGGAAAACCCGTCGGCCGTAACTAGTTTCGTTGGTCCAGG
AGTTGTGTACCTCCAGACGCACTCTCTCGCGGGGCTAAGGCGGTTGCTCT
TGCCAAAGGCGGGGTTTTATCCACAGGGGGCCGTTTCGGGGTTCCGGGGT
GCAGGGCGAGCGGGGAGGGGGGCCGGCGCTTCGCGGGGGGCAGAGGTGGG
GCTGTCGCTCAAGCGGGGACTAGCGAAACGCGCGAAGGCAGGAGCGAAGC
GAGTTATATTGGCGCTTGCTTTTTTCGCGCTCTACGTCTTGGTGTACTCC
TTGGCGACGGCGTTGTTGCTAGAGGGGAGGGAGGGGCTGGGCAACGCGCC
GCGGCACGCGTTGCAAGTGGTGCGTTCGCTCTCCAAGGTAGCACGGCGTG
TCGTGATGGTACTGCTACGGCTTGGCCAGGAAGAGCTGTGGGGGAAGGAA
GGGGATGACCAGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1230:12901..14865-

>mRNA_S-dermatodea_contig1230.1450.1 ID=mRNA_S-dermatodea_contig1230.1450.1|Name=mRNA_S-dermatodea_contig1230.1450.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2430bp|location=Sequence derived from alignment at S-dermatodea_contig1230:12901..14865- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGACGCTCAAAGGGTGCGGCTGCGTCCTGGTCACTTTGAAGATGGA
GACGCTCAAAGGGTGCGGCTGCGTCCTGGTCACTTTGAAGGCTGGCGATC
ATATCAAGGCGGACCCTCGGTGCATCGTCTCGCGCGGCACCGGCCTGGCG
CTCCGTCCGAAGGACAAGCCAGACGAAGGACGCCTGCTGCAAGGGCTGAA
GCGGAAGCTTCTCAAGAAAATCGGGCAGGAGCAGCATCAGAACCAGCTAC
AGACCCTGTCGAACACCATGTCTTCAAACGCCACAGACTGTCTCCTAGCC
CCGCCTTTCCCGGGCGACATCGCACTAGTCTCCGTAGAGAGAGGCACGGA
CGCCAACCCACCGGACACAGGCAAACGGCCGCGAACAAACACGGGGCGCA
TCGCTGGAAGGGCTGCAACGGACAGCCGCAGTCGCCGCTCGCGAGCGCCG
TCCACGGGCAGACGAAAGGAGCAGCCAGAACCGCGGGGACGCGGTACCGA
GCCGCGAACATTCGTGCTGCTGACGCAGGCTCTTGTTGCGGTTGGCCCTG
AAGTTACCGTTACGCCCATGCCCGCGGGGGGGCAGACGCCATCCGGCCTG
TTGGCTAAAAAAAGTGGCCGATCGAACACGGGCGCGCTCTCCCTCTGCGA
AGGACAAGGGCCGATCGCTGTGGCGGGCTACGGACGACTCAAGAAGTTAC
GGCTTAGAGCTGGGCAGAGGCGAATCGTAGACTCCACTCGCGCGGTGGGG
TGGACGAGCAGCGTAACTCGCCTTTCAAGTTGGGGGCGCGCCTCCGGGAG
TTCCGCGGAAAACCCGTCGGCCGTAACTAGTTTCGTTGGTCCAGGAGTTG
TGTACCTCCAGACGCACTCTCTCGCGGGGCTAAGGCGGTTGCTCTTGCCA
AAGGCGGGGTTTTATCCACAGGGGGCCGTTTCGGGGTTCCGGGGTGCAGG
GCGAGCGGGGAGGGGGGCCGGCGCTTCGCGGGGGGCAGAGGTGGGGCTGT
CGCTCAAGCGGGGACTAGCGAAACGCGCGAAGGCAGGAGCGAAGCGAGTT
ATATTGGCGCTTGCTTTTTTCGCGCTCTACGTCTTGGTGTACTCCTTGGC
GACGGCGTTGTTGCTAGAGGGGAGGGAGGGGCTGGGCAACGCGCCGCGGC
ACGCGTTGCAAGTGGTGCGTTCGCTCTCCAAGGTAGCACGGCGTGTCGTG
ATGGTACTGCTACGGCTTGGCCAGGAAGAGCTGTGGGGGAAGGAAGGGGA
TGACCAGGGGGCTGGCGATCATATCAAGGCGGACCCTCGGTGCATCGTCT
CGCGCGGCACCGGCCTGGCGCTCCGTCCGAAGGACAAGCCAGACGAAGGA
CGCCTGCTGCAAGGGCTGAAGCGGAAGCTTCTCAAGAAAATCGGGCAGGA
GCAGCATCAGAACCAGCTACAGACCCTGTCGAACACCATGTCTTCAAACG
CCACAGACTGTCTCCTAGCCCCGCCTTTCCCGGGCGACATCGCACTAGTC
TCCGTAGAGAGAGGCACGGACGCCAACCCACCGGACACAGGCAAACGGCC
GCGAACAAACACGGGGCGCATCGCTGGAAGGGCTGCAACGGACAGCCGCA
GTCGCCGCTCGCGAGCGCCGTCCACGGGCAGACGAAAGGAGCAGCCAGAA
CCGCGGGGACGCGGTACCGAGCCGCGAACATTCGTGCTGCTGACGCAGGC
TCTTGTTGCGGTTGGCCCTGAAGTTACCGTTACGCCCATGCCCGCGGGGG
GGCAGACGCCATCCGGCCTGTTGGCTAAAAAAAGTGGCCGATCGAACACG
GGCGCGCTCTCCCTCTGCGAAGGACAAGGGCCGATCGCTGTGGCGGGCTA
CGGACGACTCAAGAAGTTACGGCTTAGAGCTGGGCAGAGGCGAATCGTAG
ACTCCACTCGCGCGGTGGGGTGGACGAGCAGCGTAACTCGCCTTTCAAGT
TGGGGGCGCGCCTCCGGGAGTTCCGCGGAAAACCCGTCGGCCGTAACTAG
TTTCGTTGGTCCAGGAGTTGTGTACCTCCAGACGCACTCTCTCGCGGGGC
TAAGGCGGTTGCTCTTGCCAAAGGCGGGGTTTTATCCACAGGGGGCCGTT
TCGGGGTTCCGGGGTGCAGGGCGAGCGGGGAGGGGGGCCGGCGCTTCGCG
GGGGGCAGAGGTGGGGCTGTCGCTCAAGCGGGGACTAGCGAAACGCGCGA
AGGCAGGAGCGAAGCGAGTTATATTGGCGCTTGCTTTTTTCGCGCTCTAC
GTCTTGGTGTACTCCTTGGCGACGGCGTTGTTGCTAGAGGGGAGGGAGGG
GCTGGGCAACGCGCCGCGGCACGCGTTGCAAGTGGTGCGTTCGCTCTCCA
AGGTAGCACGGCGTGTCGTGATGGTACTGCTACGGCTTGGCCAGGAAGAG
CTGTGGGGGAAGGAAGGGGATGACCAGGGG
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