mRNA_S-dermatodea_contig123.1440.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig123.1440.1
Unique NamemRNA_S-dermatodea_contig123.1440.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig123.1440.1 vs. uniprot
Match: D7FRA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRA1_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.890e-24
Identity = 64/124 (51.61%), Postives = 84/124 (67.74%), Query Frame = 1 
Query:    1 LRLHDIEEPSHGGSGVDLPAGESSAGRGYGSTAGSESLEGATTSKTSMIRDDLVPVVWSFSKLASAASSKIAGDMVNTAGHNPTRELIEVERGAIRGVFGPVSDVRLHMARNSVTLVIIASAEA 372
            LRLH++E+      G DLPAG+SS GR YGSTAGSESLE + TSK  +IR +++PVVWS S+  +AA  K+A   + T    P REL++VE  A RG FG V  V L +AR  ++LV+ A+AEA
Sbjct:  233 LRLHNVEKLDFESPGKDLPAGDSSGGRDYGSTAGSESLETSATSKAPVIRKEILPVVWSLSEPQNAAPFKMA---IETTSDIPVRELVQVENIARRGGFGSVRGVDLQVARKCISLVMAATAEA 353
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BLAST of mRNA_S-dermatodea_contig123.1440.1 vs. uniprot
Match: A0A6H5JSJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSJ8_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.130e-23
Identity = 62/124 (50.00%), Postives = 83/124 (66.94%), Query Frame = 1 
Query:    1 LRLHDIEEPSHGGSGVDLPAGESSAGRGYGSTAGSESLEGATTSKTSMIRDDLVPVVWSFSKLASAASSKIAGDMVNTAGHNPTRELIEVERGAIRGVFGPVSDVRLHMARNSVTLVIIASAEA 372
            LRLH++E+      G DLPAG+SS GR YGST GSESLE + TSK  ++R +++PVVWS S+  +AA  K+A   + T    P REL++VE  A RG FG V  V L +AR  ++LV+ A+AEA
Sbjct:  352 LRLHNVEKLDFESPGKDLPAGDSSGGRDYGSTLGSESLETSATSKAPVLRKEILPVVWSLSEPQNAAPFKMA---IETTSDIPVRELVQVENIARRGGFGSVRSVDLQVARKCISLVMAATAEA 472
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig123.1440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRA1_ECTSI1.890e-2451.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSJ8_9PHAE1.130e-2350.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig123contigS-dermatodea_contig123:1627..2967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue7.2e-22
Seed eggNOG ortholog2880.D7FRA1
KEGG koko:K20409
KEGG Pathwayko04150,map04150
EggNOG free text desc.positive regulation of TOR signaling
EggNOG OGsCOG2319@1,KOG0309@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons3
Model size373
Cds size372
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig123.1440.1prot_S-dermatodea_contig123.1440.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig123 1627..2967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924241.7673635-CDS-S-dermatodea_contig123:1626..17261622924241.7673635-CDS-S-dermatodea_contig123:1626..1726Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 1627..1726 +
1694079118.6640933-CDS-S-dermatodea_contig123:1626..17261694079118.6640933-CDS-S-dermatodea_contig123:1626..1726Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 1627..1726 +
1622924241.787869-CDS-S-dermatodea_contig123:2092..22591622924241.787869-CDS-S-dermatodea_contig123:2092..2259Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 2093..2259 +
1694079118.6763453-CDS-S-dermatodea_contig123:2092..22591694079118.6763453-CDS-S-dermatodea_contig123:2092..2259Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 2093..2259 +
1622924241.8053079-CDS-S-dermatodea_contig123:2862..29671622924241.8053079-CDS-S-dermatodea_contig123:2862..2967Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 2863..2967 +
1694079118.6861672-CDS-S-dermatodea_contig123:2862..29671694079118.6861672-CDS-S-dermatodea_contig123:2862..2967Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig123 2863..2967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig123.1440.1

>prot_S-dermatodea_contig123.1440.1 ID=prot_S-dermatodea_contig123.1440.1|Name=mRNA_S-dermatodea_contig123.1440.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=124bp
LRLHDIEEPSHGGSGVDLPAGESSAGRGYGSTAGSESLEGATTSKTSMIR
DDLVPVVWSFSKLASAASSKIAGDMVNTAGHNPTRELIEVERGAIRGVFG
PVSDVRLHMARNSVTLVIIASAEA
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mRNA from alignment at S-dermatodea_contig123:1627..2967+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig123.1440.1 ID=mRNA_S-dermatodea_contig123.1440.1|Name=mRNA_S-dermatodea_contig123.1440.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1341bp|location=Sequence derived from alignment at S-dermatodea_contig123:1627..2967+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTACGGCTGCACGACATAGAGGAGCCGAGCCATGGGGGAAGTGGCGTGGA
TCTTCCCGCTGGGGAATCTTCCGCCGGGAGAGGATACGGTTCCACAGCAG
GTTAGAAGCATTGTCCAATCAATTGTCGCGCCCGCTCTCGATGCGTGGCA
TACGGTCGTGTGTCTTTTGGGATGGGTCGTCGTGGCCACGCAGATCAGAG
CTTCCCCTGACAAAACGCCGCCAACCAACCGCCTAGCCTTGGTGGTGACA
AGCGACATGGCATGTTCAACGTGTGATCGCCCGTGGGTTGCTCTCGATTG
GCAGTATCCCTACAAGCTGACCCGTCGATATTTGTTTTACCCGCCTCGTC
TTCAAGAAAACACCAGGGGGTGCGTGCGCCCATGTCCGGGGATGGCGCGC
CGTACTCTTATCGAATTTTGCAGCAGTCACAGGGTTCGCCGTCTCGCCTT
TGCAAATCGCATCCAGGCTCGGAGTCGCTCGAAGGGGCTACGACGAGCAA
GACCTCCATGATCAGAGACGACCTCGTGCCCGTCGTGTGGAGCTTTTCGA
AGCTTGCCAGTGCGGCCTCATCCAAGATAGCCGGAGATATGGTCAACACG
GCCGGACACAACCCAACCCGGGAGCTGATCGAGGTGTGTAAGCTGTCGGG
AAAGGCAAGCCGCTGCACAGCCGTGAGCACGTCGCTCGTTCGAAAGATGC
CCCGTCTTGGAATCACGGCCGTATAGGCAAAGGCCTGTCTCCAGAGACTG
GGTGTTATTTTTTGCTTGGCTGGCACGGGGTAGTGTGTCGAATTATGCCC
CTCCTCAGCATGTATTTTCCCCGAGGAAGGGGACTGTTATTATAGCGCCT
TGGCTACTCTCTGCATCCCAGACCGATGGTGTAGAGCTGCTTGATTGCAC
CCGACTGAACTATGCAATATTGTATACTTAAGAGTAGGCGTGACGGGCTT
TTCTTTTTCCTAGATCGAGCAACTGTCGCTCGCCCACTCGCTCGGCCGTC
CTGTCGCCCTCTAAGACCTCGCTCAATGTGCAATTGTGTGGATTCATGCT
TTCCCGCTTTCCAACTTGTACACAACCGCTATCATATTCATATTGATATT
AGCCCACGGTAGGAACCCGGACGACCTTATGGCTGCTTGCTGTTGCAATC
CACGACTCGAATACTTCGCTGACACCGGTCTGCACCCTAACGCCGCGGGC
GCCACCGTGTCCACACACGTGGGCGGGAATTCTCAGGTCGAACGGGGCGC
CATCCGCGGTGTGTTCGGCCCCGTCTCTGACGTGCGTCTTCACATGGCGC
GAAATTCGGTGACACTGGTCATCATCGCGAGTGCTGAGGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig123:1627..2967+

>mRNA_S-dermatodea_contig123.1440.1 ID=mRNA_S-dermatodea_contig123.1440.1|Name=mRNA_S-dermatodea_contig123.1440.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at S-dermatodea_contig123:1627..2967+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTACGGCTGCACGACATAGAGGAGCCGAGCCATGGGGGAAGTGGCGTGGA
TCTTCCCGCTGGGGAATCTTCCGCCGGGAGAGGATACGGTTCCACAGCAG
TTACGGCTGCACGACATAGAGGAGCCGAGCCATGGGGGAAGTGGCGTGGA
TCTTCCCGCTGGGGAATCTTCCGCCGGGAGAGGATACGGTTCCACAGCAG
GCTCGGAGTCGCTCGAAGGGGCTACGACGAGCAAGACCTCCATGATCAGA
GACGACCTCGTGCCCGTCGTGTGGAGCTTTTCGAAGCTTGCCAGTGCGGC
CTCATCCAAGATAGCCGGAGATATGGTCAACACGGCCGGACACAACCCAA
CCCGGGAGCTGATCGAGGCTCGGAGTCGCTCGAAGGGGCTACGACGAGCA
AGACCTCCATGATCAGAGACGACCTCGTGCCCGTCGTGTGGAGCTTTTCG
AAGCTTGCCAGTGCGGCCTCATCCAAGATAGCCGGAGATATGGTCAACAC
GGCCGGACACAACCCAACCCGGGAGCTGATCGAGGTCGAACGGGGCGCCA
TCCGCGGTGTGTTCGGCCCCGTCTCTGACGTGCGTCTTCACATGGCGCGA
AATTCGGTGACACTGGTCATCATCGCGAGTGCTGAGGCCGTCGAACGGGG
CGCCATCCGCGGTGTGTTCGGCCCCGTCTCTGACGTGCGTCTTCACATGG
CGCGAAATTCGGTGACACTGGTCATCATCGCGAGTGCTGAGGCC
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