prot_S-dermatodea_contig12255.1418.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig12255.1418.1
Unique Nameprot_S-dermatodea_contig12255.1418.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length272
Homology
BLAST of mRNA_S-dermatodea_contig12255.1418.1 vs. uniprot
Match: A0A6H5L6A2_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6A2_9PHAE)

HSP 1 Score: 314 bits (805), Expect = 8.040e-103
Identity = 165/284 (58.10%), Postives = 198/284 (69.72%), Query Frame = 0
Query:    1 MFFGSGKFHDHDPVSGVVLGPRPTEHDSSAKFPSGAMVYHEIMIDWVKAMHVVSGSNRLMEKINVFG--GGRK--ASSEERLVAEIEALERQNLQLQEAMLGGPMGTGEDLSQLPYGYGDPYKELSEVGYDLEFEPVMACVIDMAVQYCDIEGVKDQDPWCKTVESCIVTEFAGDECWPPSCPLSTEGCELASYCLTPELLETYVEFFQEAEDLEEAALTGTDGAVGGLGIG----------EEGDGEGAETAGASLPPFFGSRRPAASPGG----MDRAGDER 266
            MFFG+GKFHDHDP+SG+VLGPRPTEHDSSAKFP+GA+VYHE++  W K MH +SG NR+ME++NVFG  GGRK  A+SEERL+AEIEALER+N QLQ+AM GG        S LPYG+GDPY EL +V YD EFEPVM+CVIDMA+QYCD+EGVK+ DPWC+T+ESCI TEF GDECWP SCP    GC++ S+CLTPE+ + Y++   E      AA    + A  G+G G                    A   LPPFFG  RPA S GG    +DR  DER
Sbjct:  133 MFFGAGKFHDHDPLSGMVLGPRPTEHDSSAKFPAGAVVYHEVLAGWTKTMHFISGYNRVMERLNVFGSRGGRKDRAASEERLLAEIEALERKNHQLQQAMTGGEA----QESSLPYGHGDPYNELWKVAYDAEFEPVMSCVIDMAMQYCDVEGVKESDPWCRTLESCIATEFVGDECWPSSCPFQEGGCQITSFCLTPEVFDAYMQLIDE----HGAAAAAEEEAGEGVGAGWAEXXXXXXXXXXXXXXXXAAAPGLPPFFG--RPAGSQGGGGVGVDRKSDER 406          
BLAST of mRNA_S-dermatodea_contig12255.1418.1 vs. uniprot
Match: D7FNN2_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNN2_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 3.810e-50
Identity = 89/125 (71.20%), Postives = 105/125 (84.00%), Query Frame = 0
Query:    1 MFFGSGKFHDHDPVSGVVLGPRPTEHDSSAKFPSGAMVYHEIMIDWVKAMHVVSGSNRLMEKINVFGG--GRK--ASSEERLVAEIEALERQNLQLQEAMLGGPMGTGEDLSQLPYGYGDPYKEL 121
            MFFG+GKFHDHDP+SG+VLGPRPTEHDSSAKFP+GA+VYHE++  W K MH +SG NR+ME++NVFGG  GRK  A+SEERL+AEIEALER+N QLQ+AM GG   T E  S LPYG+GDPY EL
Sbjct:  133 MFFGAGKFHDHDPLSGMVLGPRPTEHDSSAKFPAGAVVYHEVLAGWTKTMHFISGYNRVMERLNVFGGRGGRKDRAASEERLLAEIEALERKNHQLQQAMTGGE--TQE--SSLPYGHGDPYNEL 253          
BLAST of mRNA_S-dermatodea_contig12255.1418.1 vs. uniprot
Match: D7FNN1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNN1_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 4.580e-28
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 0
Query:  134 MACVIDMAVQYCDIEGVKDQDPWCKTVESCIVTEFAGDECWPPSCPLSTEGCELASYCLTPELLE 198
            M+CVIDMA+QYCD+EGVK+ DPWC T+ESCI TEF GDECWP SCP    GC++ S+CLTPE+ +
Sbjct:    1 MSCVIDMAMQYCDVEGVKESDPWCSTLESCIATEFVGDECWPSSCPFQEGGCQITSFCLTPEMFD 65          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12255.1418.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L6A2_9PHAE8.040e-10358.10Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
D7FNN2_ECTSI3.810e-5071.20Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
D7FNN1_ECTSI4.580e-2867.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 75..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12255contigS-dermatodea_contig12255:1377..4272 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12255.1418.1mRNA_S-dermatodea_contig12255.1418.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig12255 678..4331 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig12255.1418.1 ID=prot_S-dermatodea_contig12255.1418.1|Name=mRNA_S-dermatodea_contig12255.1418.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=272bp
MFFGSGKFHDHDPVSGVVLGPRPTEHDSSAKFPSGAMVYHEIMIDWVKAM
HVVSGSNRLMEKINVFGGGRKASSEERLVAEIEALERQNLQLQEAMLGGP
MGTGEDLSQLPYGYGDPYKELSEVGYDLEFEPVMACVIDMAVQYCDIEGV
KDQDPWCKTVESCIVTEFAGDECWPPSCPLSTEGCELASYCLTPELLETY
VEFFQEAEDLEEAALTGTDGAVGGLGIGEEGDGEGAETAGASLPPFFGSR
RPAASPGGMDRAGDERETVAA*
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