prot_S-dermatodea_contig12238.1403.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig12238.1403.1
Unique Nameprot_S-dermatodea_contig12238.1403.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length72
Homology
BLAST of mRNA_S-dermatodea_contig12238.1403.1 vs. uniprot
Match: A0A6H5JKS8_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKS8_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 4.680e-17
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 0
Query:   21 GSVRRVIWHVLRRLETIFRVAWMVNLLLFLRQGKYATPVDRVIRMRMV 68
            G  RRV WHVL RLET+FR+AWMVNLLLFL+ GKYATPVDR++RMRMV
Sbjct:  235 GRARRVAWHVLGRLETLFRLAWMVNLLLFLKSGKYATPVDRLVRMRMV 282          
BLAST of mRNA_S-dermatodea_contig12238.1403.1 vs. uniprot
Match: W7TYI4_9STRA (Peroxin-2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYI4_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.530e-5
Identity = 23/58 (39.66%), Postives = 38/58 (65.52%), Query Frame = 0
Query:   13 RTAGKTRQGSVRRVIWHVLRRLETIFRVAWMVNLLLFLRQGKYATPVDRVIRMRMVRG 70
            R++G    G  +R  +  L R E++FR+AW++N L+FLR G Y + + R++ MR+V G
Sbjct:  244 RSSGTRGGGQWKRRAYRALTRAESLFRLAWLINFLVFLRVGSYPSLLQRLVGMRLVYG 301          
BLAST of mRNA_S-dermatodea_contig12238.1403.1 vs. uniprot
Match: A0A4D9D9T6_9STRA (Pex2_Pex12 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9T6_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 4.720e-5
Identity = 23/58 (39.66%), Postives = 38/58 (65.52%), Query Frame = 0
Query:   13 RTAGKTRQGSVRRVIWHVLRRLETIFRVAWMVNLLLFLRQGKYATPVDRVIRMRMVRG 70
            R++G    G  +R  +  L R E++FR+AW++N L+FLR G Y + + R++ MR+V G
Sbjct:  249 RSSGTQGGGQWKRRAYRALTRAESLFRLAWLLNFLVFLRVGSYPSLLQRLVGMRLVYG 306          
BLAST of mRNA_S-dermatodea_contig12238.1403.1 vs. uniprot
Match: A0A1D2A1X3_AUXPR (Pex2_Pex12 domain-containing protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A1X3_AUXPR)

HSP 1 Score: 48.5 bits (114), Expect = 8.790e-5
Identity = 26/63 (41.27%), Postives = 36/63 (57.14%), Query Frame = 0
Query:    6 ARLFPPSRTAGKTRQGSVRRVIWHVLRRLETIFRVAWMVNLLLFLRQGKYATPVDRVIRMRMV 68
            AR    + + G    G  R   W V+RR ET +R+A +VN + FLR GKY T ++R+I  R V
Sbjct:  170 ARAGHAAASGGSDGDGGWRATAWQVMRRAETAYRLAALVNAIAFLRAGKYRTLLERLIGARPV 232          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12238.1403.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JKS8_9PHAE4.680e-1779.17RING-type domain-containing protein n=2 Tax=Ectoca... [more]
W7TYI4_9STRA2.530e-539.66Peroxin-2 n=1 Tax=Nannochloropsis gaditana TaxID=7... [more]
A0A4D9D9T6_9STRA4.720e-539.66Pex2_Pex12 domain-containing protein n=1 Tax=Nanno... [more]
A0A1D2A1X3_AUXPR8.790e-541.27Pex2_Pex12 domain-containing protein n=2 Tax=Auxen... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006845Pex, N-terminalPFAMPF04757Pex2_Pex12coord: 16..70
e-value: 6.5E-8
score: 32.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12238contigS-dermatodea_contig12238:6503..6718 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12238.1403.1mRNA_S-dermatodea_contig12238.1403.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig12238 6503..6718 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig12238.1403.1 ID=prot_S-dermatodea_contig12238.1403.1|Name=mRNA_S-dermatodea_contig12238.1403.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=72bp
PIRVLARLFPPSRTAGKTRQGSVRRVIWHVLRRLETIFRVAWMVNLLLFL
RQGKYATPVDRVIRMRMVRGGR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006845Pex_N