mRNA_S-dermatodea_contig12236.1402.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig12236.1402.1 vs. uniprot
Match: D7G2M2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2M2_ECTSI) HSP 1 Score: 201 bits (512), Expect = 3.940e-53 Identity = 122/292 (41.78%), Postives = 160/292 (54.79%), Query Frame = 1
Query: 1 GRLGNHFAIASRFLSVGYCCKAKMVILPPKDPVLAPGMFGEGVPGPRYFDFSDAPDVPGFDHAAECEEDYTAGGERAYRAYLRTTSYPSGKWGNEALAACTEKA-RLLDCEAAYYFPKGMDICAAP-PGEGDXXXXXXXXXXPNTS------------LAFGKEAKNLVFHIRSGDIFKRNKAYGEYGQPPLSYYTAILNSREWKRVDIVTYADSRGSE--NIVVPGLRMLIETGSWPRTNVTIHTDRDIEVDLQAMLCADA-LATSRSTLGELTAYHTRATTVYFPSTCDG 825
GRLGN F L +GYCCK+K+V LP KD LAPG+FGEG PGPR++DF++APDV GFD A+ C D T GG A+ +L PS + + L+ C E RL CEAAY+FP G+D+C + GD S G+ A LV H+RSGDIF A G YGQPPL YY + ++W RVDIVT ++ N V+P L ++ G N+ H DR +E D +M+C L T+RS+L L A+H+ A+ +YFP C G
Sbjct: 155 GRLGNRFWALGVNLKLGYCCKSKLVSLPAKDDTLAPGIFGEGTPGPRWYDFTNAPDVEGFD-ASSCPADITWGGREAF--HLLGLDNPSHPYYSPNLSTCVETVPRLTGCEAAYFFPMGVDVCLSDRTATGDVVHEQRGNGASGRSGPGVKKNLVGSEEEEGRPANTLVIHVRSGDIFVDPAAPG-YGQPPLQYYVRAIKHQKWDRVDIVTNGRTKKMNVMNPVIPALEVMFAEGELTG-NIYFHKDRTMEEDFLSMMCVGGGLVTARSSLSLLLAHHSSASRLYFPRPCAG 441
BLAST of mRNA_S-dermatodea_contig12236.1402.1 vs. uniprot
Match: D7G610_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G610_ECTSI) HSP 1 Score: 197 bits (502), Expect = 7.730e-53 Identity = 135/349 (38.68%), Postives = 178/349 (51.00%), Query Frame = 1
Query: 1 GRLGNHFAIASRFLSVGYCCKAKMVILPPKDPVLAPGMFGEGVPGPRYFDFSDAPDVPGFDHAAECEEDYTAGGERAYRAYLRTTSYPSGKWGNEALAACTEKA-RLLDCEAAYYFPKGMDICAAPPGEGDXXXXXXXXXXPNTSLAFGKE-----AKNLVFHIRSGDIFKRNKAYGEYGQPPLSYYTAILNSREWKRVDIVTYADSRGSENIVVPGLRMLIETGSWPRTNVTIHTDRDIEVDLQAMLCADALATSRSTLGELTAYHTRATTVYFPSTCDGVGSAFGLTPAALMAYRSRREENFEVFGLELKSDAPDYHVYDEERIFED--QQRLEMLQYQGIAGIVNC 1023
GR GN F R L++GYCCKAK V LPPKD VLAPG+F EG PGPR+FDFS APDV G D C D A + + P + C KA RLL CEAAYYFP+ + +C LA G A NLV H+RSGDIF ++ GQPPL +Y ++ + W R+D+VT + + N VVP L + TG+ P NV HT+R + DLQ+MLCAD+L ++S+L +YH+ A VY+P C+ L A + +++ V+GL+L Y VY R +E+ +QR EML Y C
Sbjct: 91 GRTGNRFMAVYRNLALGYCCKAKQVWLPPKDDVLAPGIFNEGTPGPRWFDFSSAPDVDGVD-LGRCPIDIIWENRGAMQ--MAGLDNPERNKYLPHIRDCMAKAPRLLGCEAAYYFPQDIAVCPR---------------KKKPFLALGDRNPPGGAGNLVLHVRSGDIFF-DRVVPYKGQPPLQFYLLLMQDQPWDRIDVVTNGQNWDNVNPVVPALMAMRATGALP-DNVYFHTERSMGEDLQSMLCADSLGLAKSSLVNFLSYHSTANRVYYPWRCN-----HDLRELARLRPKTK------VYGLQLDRSGS-YSVY---RHWENTPEQRAEMLGYNVTTTFQRC 404
BLAST of mRNA_S-dermatodea_contig12236.1402.1 vs. uniprot
Match: A0A6H5K7B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B3_9PHAE) HSP 1 Score: 195 bits (495), Expect = 1.520e-50 Identity = 137/382 (35.86%), Postives = 181/382 (47.38%), Query Frame = 1
Query: 4 RLGNHFAIASRFLSVGYCCKAKMVILPPKDPVLAPGMFGEGVPGPRYFDFSDAPDVPGFDHAAECEEDYTAGGERAYRAY-LRTTSYPSGKWGNEALAACTEKARLLDCEAAYYFPKGMDICAAP---PGEGDXXXXXXXXXX-------PNTSLAFGKE---------------------------AKNLVFHIRSGDIFKRNKAYGEYGQPPLSYYTAILNSREWKRVDIVT--YADSRGSENIVVPGLRMLIETGSWPRTNVTIHTDRDIEVDLQAMLCADALATSRSTLGELTAYHTRATTVYFPSTCDGVGSAFGLTPAALMAYRSRREENFEVFGLELKSDAPDYHVYDEERIFEDQQRLEMLQYQGIAGIVNCTA 1029
RLGN F SR LS+GYCCK++++ LPPKD LAPG F EG+PGPR FDFS APDV GFD+++ C + T GG A+ LR +P + E E R+ CEAAY+FPK M + P E D P L +G+ A NLV H+RSGDIF R + +YGQPPL YY + +EW RVD+VT D + N VVP L + G N+ H +R I DL+ M+CAD +RSTL + ++H+ A +YFP C+ + S +VFG+ +D Y VY DQ EM+ + + G CTA
Sbjct: 180 RLGNRFTSMSRSLSLGYCCKSRLLSLPPKDEQLAPGRFNEGIPGPRNFDFSSAPDVEGFDYSS-CPPEITWGGTNAFHLQGLRDEGHPY--YTPELFECIKELPRIAGCEAAYFFPKDMAVDMCPLDETAERDHNNSNVRDVSEKPRDDAPGVRLDWGERGQGREATXXXXXXXXXXXXXXXXXEGSAGNLVVHVRSGDIFVR--PHPDYGQPPLQYYVRAIQDQEWDRVDVVTDGIVDETHAINPVVPALEAKVAEGELAG-NIHFHKNRTIGEDLRYMICADGFVAARSTLRHVVSHHSSAKRMYFPMACN-----------EKLKTLSTERPGTQVFGMASWNDQ--YTVYQRWNNTADQL-TEMMTFD-VGGFEQCTA 540
BLAST of mRNA_S-dermatodea_contig12236.1402.1 vs. uniprot
Match: D7G1L4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L4_ECTSI) HSP 1 Score: 174 bits (442), Expect = 2.480e-43 Identity = 113/307 (36.81%), Postives = 156/307 (50.81%), Query Frame = 1
Query: 4 RLGNHFAIASRFLSVGYCCKAKMVILPPKDPVLAPGMFGEGVPGPRYFDFSDAPDVPGFDHAAECEEDYTAGGERAYRAY-LRTTSYPSGKWGNEALAACTEKAR-LLDCEAAYYFPKGMDICAAP---PGEGDXXXXXXXXXXPNTSL----------AFGKEAK-----------------NLVFHIRSGDIFKRNKAYGEYGQPPLSYYTAILNSREWKRVDIVTYA--DSRGSENIVVPGLRMLIETGSWPRTNVTIHTDRDIEVDLQAMLCADALATSRSTLGELTAYHTRATTVYFPSTCD 822
RLGN F R LS+GYCCK+++V LPPKD LAPG F +G PGPR FDFS APDV GFD ++ C + GG +A+ LR +P + L C ++ ++ CEAAY+FP M + P EG P G+EA NLV H+RSGDIF + A+ YGQ YY + ++W RVD+VT D + N +VP L + G P N+ H +R +E DL +M+CAD +RSTLG + ++ + A +YFP++C+
Sbjct: 185 RLGNRFLSMGRSLSLGYCCKSRLVSLPPKDDQLAPGRFNDGTPGPRNFDFSSAPDVEGFD-SSSCPPEIKWGGTQAFHLEGLRDEGHP---YYTPGLFTCIKELPWIIGCEAAYFFPTDMAVPMCPLDETAEGGNKNVRDISEKPKDDAPGIQLDWEESGHGREATEQXXXXXXXXXXXGSAGNLVMHVRSGDIFV-SPAHPGYGQ----YYVQAIQDQQWDRVDVVTNGIEDKNHAINPIVPALEAKVAKGQLPG-NIHFHKNRTMEEDLLSMICADGFVAARSTLGRVVSHLSSAKRMYFPTSCN 481
BLAST of mRNA_S-dermatodea_contig12236.1402.1 vs. uniprot
Match: D7FRV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV9_ECTSI) HSP 1 Score: 148 bits (373), Expect = 1.080e-34 Identity = 115/358 (32.12%), Postives = 171/358 (47.77%), Query Frame = 1
Query: 1 GRLGNHFAIASRFLSVGYCCKAKMVILPPKDPVLAPGMFGEGVP-GPRYFDFSDA-PDVPGFDHAAE----CEEDYTAGGERAYRAYLRTTSYPSGKWGNEALAACTEKARLLDCEAAYYFPKGMDICAAPPGEGDXXXXXXXXXXPNTSLAFGKEAKNLVFHIRSGDIFKRN---KAYGEYGQPPLSYYTAILNSREWKRVDIVTYADSRGSENIVVPGLRMLIETGSWPRTNVTIHTDRDIEVDLQAMLCADALATSRSTLGELTAYHTRATTVYFPSTCDGVGSAFGLTPAALMAYRSR-----REENFEVFGLELKSDAPDYHVYDEERIFED--QQRLEMLQYQGIAGIVNCT 1026
GR GNHF + S +L++G+CC+++++ LP D + G G G R+FDFS P PGF+ + C G + A+ Y S L C + L CE AY K +D+ EG P K A +LV HIRSGDIF N + E+GQPPL YY +L ++W V +T A ++ + N L ++ + G+ NV + +R + D++ MLCADALATSRS++ LT H+RATT + P+ C G P + + + + EV+G ++P Y VY + + D +Q LEM + GI G+ C+
Sbjct: 120 GRSGNHFLMISSYLAMGFCCRSRLLTLPEVDTAMPGDDEGGGFKAGERWFDFSRVTPPWPGFEQLGDNPEVCRPQMEDGADNAF-GYEHIHS---------RLLRCMNRVYLRGCEKAY-LGKMVDL------EG---------FCPKQEPGKRKGAGSLVVHIRSGDIFNPNEEGRRRTEFGQPPLQYYLHVLGEKDWDNVTFLTAAWNQKAINPTFSILEVMAKAGTLG-DNVRLLKNRSLLEDVREMLCADALATSRSSMSFLTFAHSRATTFFVPTPCGNGGFRRMRRPPVKATFDNTTLLLLEKPDAEVYGTAWPGNSPKYSVY---QAWHDTPEQLLEMATFGGIEGVQKCS 447
BLAST of mRNA_S-dermatodea_contig12236.1402.1 vs. uniprot
Match: A0A6H5K2F3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2F3_9PHAE) HSP 1 Score: 132 bits (331), Expect = 8.760e-29 Identity = 67/124 (54.03%), Postives = 85/124 (68.55%), Query Frame = 1
Query: 4 RLGNHFAIASRFLSVGYCCKAKMVILPPKDPVLAPGMFGEGVPGPRYFDFSDAPDVPGFDHAAECEEDYTAGGERAYRAYLRTTSYPSGKWGNEALAACTEKA-RLLDCEAAYYFPKGMDICAA 372
R GNHF+ R L++GYCCK+K+V LPPKD VLAPG+F +G PGPR+FDFS APDV GFD +A C D T G+RA+ ++ P ++ L C +A RLL CEAAYYFPK +D+C A
Sbjct: 127 RTGNHFSSFFRNLALGYCCKSKVVWLPPKDDVLAPGVFNQGTPGPRWFDFSSAPDVDGFDSSA-CSADITWAGQRAF--HMHQLDSPEHEFHTPGLKECIARAPRLLACEAAYYFPKDVDLCHA 247
BLAST of mRNA_S-dermatodea_contig12236.1402.1 vs. uniprot
Match: D7FRV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV8_ECTSI) HSP 1 Score: 127 bits (318), Expect = 2.320e-28 Identity = 108/346 (31.21%), Postives = 160/346 (46.24%), Query Frame = 1
Query: 46 VGYCCKAKMVILPPKDPVLAPGMFGEGVPGPRYFDFSDA----PDVPGF-DHAAECEEDYTAGGERAYRAYLRTTSYPSGKWGNEALAACTEKARLLDCEAAYYFPKGMDICAAPPGEGDXXXXXXXXXXPNTSLAFGKEAKNLVFHIRSGDIF----KRNKAYGEYGQPPLSYYTAILNSREWKRVDIVTYADSRGSENIVVPGLRMLIETGSWPRTNVTIHTDRDIEVDLQAMLCADALATSRSTLGELTAYHTRATTVYFPSTCDGVG----------SAFGLTPAALMAYRSRREENFEVFGLELKSDAPDYHVYDEERIFEDQQRLEMLQYQGIAGIVNCT 1026
+G+CC+++++ LP D L P R+FDFS+ P+ D C + GG +A+ Y + L C + L CE AY K +D+ + P K A +LV HIRSGDIF + ++ G +GQPPL YY +L +++W V +T A + N L M+ + G NV + +R + D++ MLCADALATSRS++ LT H+RATT + P+ C G + F T L+ +RE EVFG++ + + DY VY + + Q LEM Y+GI G+ CT
Sbjct: 1 MGFCCRSRLLTLPATDDKL-PDELDNFTSARRWFDFSNVTVPWPEYQEMGDDQEVCRPETKDGGRKAF-------GYEDV---HPKLLECMNRVYLRGCEKAY-LGKLVDVGS---------------FCPKQEPGKRKGAGSLVAHIRSGDIFNPDGEGHRRQG-FGQPPLQYYLRVLAAKDWDNVTFLTAAWEDRALNPTFLTLEMMADAGVLGE-NVHLFNNRTLLTDMKEMLCADALATSRSSMSFLTFAHSRATTFFVPTPCGNGGFRRMKDVPVKATFDNTTLLLL---EKRES--EVFGVDWRQNGSDYSVY-KNWLDSPHQLLEMTTYKGIKGLQKCT 311
BLAST of mRNA_S-dermatodea_contig12236.1402.1 vs. uniprot
Match: A0A6H5JNM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM4_9PHAE) HSP 1 Score: 117 bits (293), Expect = 2.170e-24 Identity = 106/369 (28.73%), Postives = 150/369 (40.65%), Query Frame = 1
Query: 1 GRLGNHFAIASRFLSVGYCCKAKMVILPPKDPVLAPGMFGEGVPGPRYFDFSDAPDVPGFDHAAECEEDYTAGGERAYRAYLRTTSYPSGKWG-------------------NEALAACTEKARLLDCEAAYYFPKGMDICAAP--PGEGDXXXXXXXXXXPNTSLAFGKEAK---NLVFHIRSGDIFKRNKAYGEYGQPPLSYYTAILNSREWKRVDIVTYADSRGSENIVVPGLRMLIETG--SWPRTNVTIHTDRDIEVDLQAMLCADALATSRSTLGELTAYHTRATTVYFPSTCDGVGSAFGLTPA--ALMAYRSRREENFEVFGLELKSDAPDYHVYDEERIFEDQQRLEMLQYQGIAGIVNC 1023
GR GNH+ S S+ +CC K++ LP D GE F FS H + E ER + L G+ G + L C + CEAAY D + P P P T+ E K +LV HIRS DIFK + Y +YGQPPL Y+ A++ S++W + ++T G + + P ++ E + TNV +H DR DLQAMLCAD+LA S STL L H+RA + P C+ L A M R E V+G++ ++ + Y VYD + +EM+ + G+ C
Sbjct: 86 GRSGNHYMAISTMFSLAFCCGVKVLELPDTDYRFPTEEGGEFKSSKHLFSFSS--------HGTDGVE-----AERQTWSQLTGLEDLQGRVGVCPKKRIVDGTHANHITGLGKDLQRCIRHVHMRGCEAAYLQQVIGDESSCPDSPPPVGTDGEPTGLVVPGTTGLLPSETKGDGHLVVHIRSQDIFKPDTRYHQYGQPPLGYFLAVIASKKWDYLSVLT----SGPDKQLNPTYSVIAELNRQGFLGTNVEMHKDRSFWEDLQAMLCADSLALSHSTLSNLLLAHSRAKRFFLPWGCEPQPWTLKLNRFVNASMICLQRPE----VYGIDWRTTSDAYTVYDSWD--PNSNMMEMVVSDAVKGVQRC 431
BLAST of mRNA_S-dermatodea_contig12236.1402.1 vs. uniprot
Match: D7FHC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC1_ECTSI) HSP 1 Score: 114 bits (284), Expect = 9.840e-23 Identity = 97/355 (27.32%), Postives = 143/355 (40.28%), Query Frame = 1
Query: 1 GRLGNHFAIASRFLSVGYCCKAKMVILPPKDPVLAPGMFGEGVPGPRYFDFSDAPDVPGFDHAAECEEDYTAGGERAYRAYLRTTS-YPSGKWGNEA------LAACTEKARLLDCEAAYYFP-----KGMDICAAPPGEGDXXXXXXXXXXPNTSLAFGKEAKNLVFHIRSGDIFKRNKAYGEYGQPPLSYYTAILNSREWKRVDIVTYADSRGSENIVVPGLRMLIETG--SWPRTNVTIHTDRDIEVDLQAMLCADALATSRSTLGELTAYHTRATTVYFPSTCDGVGSAFGLTPAALMAYRSRREENFEVFGLELKSDAPDYHVYDEERIFEDQQRLEMLQYQGIAGIVNC 1023
GR GNH+ S S+ YCC K++ LP D GE F FS + G + + T + R + G N L C + CEAAY + PP E D + K +LV HIRS DIF + + +YGQPPL Y+ A++ S++W + ++T G + + P ++ E + TNV +H DR VDLQ MLCAD LA S STL L H+RA + P C+ L + + +V+G++ ++ Y VYD + +EM+ + G+ C
Sbjct: 211 GRSGNHYMAISAMFSLAYCCGVKVLQLPDTDYRFPTEEGGEFKSSKHLFTFS-SNGTDGVEAERQTWSQLTGLEDLQGRVGICPKERIVDGTHANHITGLGKDLQTCIRHVHMRGCEAAYLQQVIGDERSCPDSPPPPVETDGEPTELVVPGTAGLPSERKGDGHLVVHIRSQDIFSPDTRFHQYGQPPLGYFLAVIASKKWDYLSVLT----SGPDKQLNPTYSVIAELNRQGYLGTNVGMHKDRSFWVDLQTMLCADNLALSHSTLSNLLLAHSRAKRFFLPWGCEPQPWTLKLNRFVNASMICLQRPEVQVYGIDWRTTKDAYTVYDSWD--PNSNMMEMVVSDAVKGVQRC 558
BLAST of mRNA_S-dermatodea_contig12236.1402.1 vs. uniprot
Match: D7FSJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ7_ECTSI) HSP 1 Score: 107 bits (268), Expect = 1.200e-21 Identity = 76/258 (29.46%), Postives = 119/258 (46.12%), Query Frame = 1
Query: 280 NEALAACTEKARLLDCEAAYYFPK--GMDICAAP----PGEGDXXXXXXXXXXPNTSLAFGKEAKNLVFHIRSGDIFKRNKAYG--EYGQPPLSYYTAILNSREWKRVDIVTYADSRGSENIVVPGLRMLIETGSWPRTNVTIHT--DRDIEVDLQAMLCADALATSRSTLGELTAYHTRATTVYFPSTCDGVGSAFGLTPAALMAYRSRREENFEVFGLELKSDAPDYHVYDEERIFEDQQRLEMLQYQGIAGIVNC 1023
+E L AC ++ CEA Y+ G + C+ P P + + +TS K A++LVFH RSGD+FK K + YGQPPL Y A++ S++W + +T + N + LI G + T R + DLQAMLCADAL+ + STL L H+RA + P C+ + + + EV+G+E ++ + Y VY+ + +LEM+ + G+ +C
Sbjct: 101 HEDLQACMNNVKMRGCEAVYFQGSFGGEEYCSTPRHRLPADEEEPGLLVAG---STSPLETKRARSLVFHFRSGDVFKPRKDFHFQTYGQPPLLYVLAVIASKKWSNLTFITNGEHERLLNPTFRVIEELISQGILGTNGTIVETYKKRSLWEDLQAMLCADALSVAHSTLTNLLLAHSRAKMFFLPWGCEPQIGDMMIPRFVSASMICLQRPEVEVYGIEWRTTSNAYTVYN--KWDPSVNQLEMIVSDDLKGVQHC 353 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12236.1402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12236.1402.1 >prot_S-dermatodea_contig12236.1402.1 ID=prot_S-dermatodea_contig12236.1402.1|Name=mRNA_S-dermatodea_contig12236.1402.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=321bp MVILPPKDPVLAPGMFGEGVPGPRYFDFSDAPDVPGFDHAAECEEDYTAGback to top mRNA from alignment at S-dermatodea_contig12236:738..7089+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12236.1402.1 ID=mRNA_S-dermatodea_contig12236.1402.1|Name=mRNA_S-dermatodea_contig12236.1402.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6352bp|location=Sequence derived from alignment at S-dermatodea_contig12236:738..7089+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12236:738..7089+ >mRNA_S-dermatodea_contig12236.1402.1 ID=mRNA_S-dermatodea_contig12236.1402.1|Name=mRNA_S-dermatodea_contig12236.1402.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1926bp|location=Sequence derived from alignment at S-dermatodea_contig12236:738..7089+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |