mRNA_S-dermatodea_contig1218.1362.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1218.1362.1
Unique NamemRNA_S-dermatodea_contig1218.1362.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1218.1362.1 vs. uniprot
Match: D7FGQ9_ECTSI (Dolichyldiphosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGQ9_ECTSI)

HSP 1 Score: 343 bits (879), Expect = 7.330e-114
Identity = 170/218 (77.98%), Postives = 187/218 (85.78%), Query Frame = 2 
Query:   65 MVVDPCDEDYAYLSLTVARYAKDDALGKYVALLTLSPIYLAVAYMTLVVVRRDLQVFVLAVGHLVDLAINKVLKTWFAEARPPGCVNTGHGMPSNHTQYMFFFATFTALHLWNRASYGTGAKVGLTSALLCWAAGVGFSRMCLRCHTLNQVLVGAAVGSGGGALWYLLYAKASEDRAILVLSPLLPAVARWPISRALYIKDYSQVSHVLAFEHSNLHG 718
            MVVDPCDEDYAYLSLTVARYAK+DALGKY+ALLTLSPIYLAVAYMTLVVVRRDLQVFVLAVGHLVDL +NK LKTW AEARPPGC+NTGHGMPSNH+QYMFFFA+F +L+LW R S+   AKVGLTS L  WAA V +SRMCL+CHTL QV VGAAVG+  G LWYLLY+K        VL PLLP VA+WPISRALY+KDYSQVS+VLAFEH  L+G
Sbjct:    1 MVVDPCDEDYAYLSLTVARYAKEDALGKYMALLTLSPIYLAVAYMTLVVVRRDLQVFVLAVGHLVDLVVNKALKTWIAEARPPGCINTGHGMPSNHSQYMFFFASFVSLYLWGRVSFSAEAKVGLTSVLAGWAASVAYSRMCLQCHTLKQVAVGAAVGTTTGGLWYLLYSK--------VLLPLLPRVAKWPISRALYVKDYSQVSNVLAFEHDALYG 210
[Close]
BLAST of mRNA_S-dermatodea_contig1218.1362.1 vs. uniprot
Match: A0A6G0XWR1_9STRA (Dolichyldiphosphatase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XWR1_9STRA)

HSP 1 Score: 134 bits (337), Expect = 7.700e-32
Identity = 77/201 (38.31%), Postives = 117/201 (58.21%), Query Frame = 2 
Query:  104 SLTVARYAKDDALGKYVALLTLSPIYLAVAYMTLVVVRRDLQVFVLAVGHLVDLAINKVLKTWFAEARPPGCVNTGHGMPSNHTQYMFFFATFTALHLWNRASYGTGAKVGLT-SALLCWAAGVGFSRMCLRCHTLNQVLVGAAVGSGGGALWYLLYAKASEDRAILVLSPLLPAVARWPISRALYIKDYSQVSHVLAFEH 703
            SLT   Y   D LG+ +AL+TLSP+++ V Y TL++ +RDL +  + +G LV+   N++LK    + RP G      GMPS H+Q+M FFAT+  L+  NR S     +  L    ++  A  V FSR+ L  H++ QV+VGAAVG+G G LWY++           +  PL P +A W IS+ L+I+D S +  ++ F++
Sbjct:  152 SLTWVMYDAADPLGQLLALVTLSPVFIMVMYATLILFQRDLHIIFMVLGQLVNEVFNQILKRTIDQKRPDGADMEDAGMPSAHSQFMAFFATYVVLYTSNRMSKRREWEHKLAIGGVILLALLVFFSRIRLGYHSVAQVVVGAAVGAGTGILWYIVLEN--------IAMPLFPTIASWDISKLLFIRDCSHIPDMVEFQY 344
[Close]
BLAST of mRNA_S-dermatodea_contig1218.1362.1 vs. uniprot
Match: Q7QCK1_ANOGA (Dolichyldiphosphatase n=16 Tax=Cellia TaxID=44534 RepID=Q7QCK1_ANOGA)

HSP 1 Score: 129 bits (325), Expect = 3.490e-31
Identity = 79/216 (36.57%), Postives = 119/216 (55.09%), Query Frame = 2 
Query:   89 DYAYLSLTVARYAKDDALGKYVALLTLSPIYLAVAYMTLVVVRRDLQVFVLAVGHLVDLAINKVLKTWFAEARPPGCVN--TGHGMPSNHTQYMFFFATFTAL-------HLWNRASYGTGAKVGLTSALLCWAAG--VGFSRMCLRCHTLNQVLVGAAVGSGGGALWYLLYAKASEDRAILVLSPLLPAVARWPISRALYIKDYSQVSHVLAFEH 703
            D+  ++LT+  Y K D +GK +A ++L+P+ +   ++ L++ RRDL   V  +G LV+  +N +LK W  E RP       T +GMPS+H+Q+M FFAT+  L       H+ N  S      V L    +CW A   V F R+ L  HTL+QVL+GA VG+  GALW+LL           VL+P  P V  W +S    ++D + + ++L FE+
Sbjct:   23 DWQPITLTLVEYPKGDFVGKLLAWISLAPLGIGAGFVALILFRRDLHTIVFFLGTLVNECLNILLKHWIQEPRPVSRAQIWTEYGMPSSHSQFMCFFATYVLLFIFIRLHHINNSNSARFERLVRLLVLAICWTAAFLVCFGRIYLLYHTLSQVLIGALVGTVMGALWFLL--------THFVLTPYFPMVVLWRVSELFLLRDTTLIPNILWFEY 230
[Close]
BLAST of mRNA_S-dermatodea_contig1218.1362.1 vs. uniprot
Match: A0A8K1FDI5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDI5_PYTOL)

HSP 1 Score: 125 bits (315), Expect = 4.450e-30
Identity = 77/219 (35.16%), Postives = 120/219 (54.79%), Query Frame = 2 
Query:   86 EDYAYLSLTVARYAKDDALGKYVALLTLSPIYLAVAYMTLVVVRRDLQVFVLAVGHLVDLAINKVLKTWFAEARPPGCVNTGHGMPSNHTQYMFFFATFTALHLWNRASYGTGAKVGLTS-ALLCWAAGVGFSRMCLRCHTLNQVLVGAAVGSGGGALWYLLYAKASEDRAILVLSPLLPAVARWPISRALYIKDYSQVSHVLAFEHSNLHGSTHQQGS 739
            E +    LT   Y   D  G  +AL TLSP+++ V Y TLVV +RDL    L VG L++ A+N++LK    ++RP G   +G GMPS H+Q++ FFA +   +   R +     +  LT  +++  A  V  SR+ L  HTL+QVLVGAAVG+  G +W+L  ++ S        S L P +    I++  Y++D S +  ++ ++H   H  +H + S
Sbjct:   11 EAFKEFELTWVVYDPSDPFGAILALCTLSPVFIMVMYATLVVFQRDLDAIALLVGQLLNEALNQILKRSIKQSRPRGARISGAGMPSAHSQFIAFFAAYVVAYTIKRFNAHRRLEKSLTIFSVVILAIVVCISRVRLGYHTLDQVLVGAAVGAASGFVWFLTVSQTS--------SWLFPWITETSIAQFFYVRDISHIPDLIVYQHELCHRPSHPKSS 221
[Close]
BLAST of mRNA_S-dermatodea_contig1218.1362.1 vs. uniprot
Match: UPI001D07264A (dolichyldiphosphatase 1-like n=1 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D07264A)

HSP 1 Score: 125 bits (314), Expect = 1.200e-29
Identity = 73/216 (33.80%), Postives = 119/216 (55.09%), Query Frame = 2 
Query:   89 DYAYLSLTVARYAKDDALGKYVALLTLSPIYLAVAYMTLVVVRRDLQVFVLAVGHLVDLAINKVLKTWFAEARPPG--CVNTGHGMPSNHTQYMFFFATFTAL-------HLWNRASYGTGAKVGLTSALLCWAAGVGFSRMCLRCHTLNQVLVGAAVGSGGGALWYLLYAKASEDRAILVLSPLLPAVARWPISRALYIKDYSQVSHVLAFEHSN 709
            ++  +SLT+  Y KDD  GK +A ++L+P+ + V ++TL++ RRD+      +G L+   +N  LK    E RP     V   +GMPS+H+Q+M+FFAT+          H+ N       +K+ + S+ +  A  V FSR+ L+ HT++QVL GA VG     +W+ L          L+ +PL P +  W IS  L ++D + + +VL FE++N
Sbjct:   22 EWVPISLTLVEYPKDDLFGKILAFISLAPLVIVVGFITLIIFRRDMHTITFFIGSLLCEILNSALKHTIREPRPVARETVYNEYGMPSSHSQFMWFFATYVVYFVIIRLHHMNNNTIMENISKIIIISSCVISALVVCFSRIYLQYHTISQVLCGAIVGIIFATIWFTL--------TCLIFTPLYPQIVSWKISEFLLLRDTTLIPNVLWFEYTN 229
[Close]
BLAST of mRNA_S-dermatodea_contig1218.1362.1 vs. uniprot
Match: A0A0P1AYE8_PLAHL (Dolichyldiphosphatase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AYE8_PLAHL)

HSP 1 Score: 124 bits (311), Expect = 1.570e-29
Identity = 78/200 (39.00%), Postives = 109/200 (54.50%), Query Frame = 2 
Query:  107 LTVARYAKDDALGKYVALLTLSPIYLAVAYMTLVVVRRDLQVFVLAVGHLVDLAINKVLKTWFAEARPPGCVNTGHGMPSNHTQYMFFFATFTALHLWNRASYGTGAKVGLTSALLCWAAGVG-FSRMCLRCHTLNQVLVGAAVGSGGGALWYLLYAKASEDRAILVLSPLLPAVARWPISRALYIKDYSQVSHVLAFEH 703
            LT   Y   D  G  +AL TLSPI+L V Y+T+VV +RDL    + +G LV +AINKVLK    + RP G   +G GMPS H+Q+M FFA +  ++   R +     + GLT       A +  +SR+ L  H+ +QV+VG A G   G LWY L A  S        S L P VA   I++ L+++D S +  +  F+H
Sbjct:   12 LTWVVYDPKDPFGAMLALCTLSPIFLIVVYLTVVVSQRDLDSISMLIGQLVSIAINKVLKKLINQPRPEGAYMSGSGMPSAHSQFMGFFAAYFVIYTSKRLNSRRRLEQGLTIVCAIMVAMLTCYSRIHLNYHSTDQVVVGVAFGILTGILWYTLVASTS--------SWLFPLVAESRIAKFLFVRDISHIPDLTVFQH 203
[Close]
BLAST of mRNA_S-dermatodea_contig1218.1362.1 vs. uniprot
Match: E0VVJ1_PEDHC (Dolichyldiphosphatase n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0VVJ1_PEDHC)

HSP 1 Score: 125 bits (313), Expect = 1.700e-29
Identity = 79/225 (35.11%), Postives = 123/225 (54.67%), Query Frame = 2 
Query:   62 KMVVDPCDEDYAYLSLTVARYAKDDALGKYVALLTLSPIYLAVAYMTLVVVRRDLQVFVLAVGHLVDLAINKVLKTWFAEARP--PGCVNTGHGMPSNHTQYMFFFATFTAL-------HLWNRASYGTGAKVGLTSALLCWAAGVGFSRMCLRCHTLNQVLVGAAVGSGGGALWYLLYAKASEDRAILVLSPLLPAVARWPISRALYIKDYSQVSHVLAFEHSN 709
            K V    + ++  LSLTV  Y K D LG+++AL +L P  +   ++ L++ RRDL      +G + +  IN +LK  F EARP     + T +GMPS+H+Q+M+FF T+          H+ N+ S  T  +  LT+  L  A+ V +SR+ L+ HT NQVL G  VG    ++W+            +V +PL P +A W IS  L ++D + + +VL FE++N
Sbjct:   14 KNVETESEYEWVPLSLTVVEYPKGDWLGRFLALASLLPFSIISGFIALILFRRDLHTISFFIGTIFNELINVILKHIFCEARPLARNSLYTEYGMPSSHSQFMWFFTTYIVYFIFIRLQHMNNKTSLETVWRGVLTTVCLLAASIVTYSRIYLQYHTWNQVLTGIVVGFIFASIWFAA--------TFVVFTPLYPTIASWKISEFLLLRDTTLIPNVLWFEYTN 230
[Close]
BLAST of mRNA_S-dermatodea_contig1218.1362.1 vs. uniprot
Match: UPI0015AE42EC (dolichyldiphosphatase 1-like isoform X1 n=2 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015AE42EC)

HSP 1 Score: 124 bits (310), Expect = 4.550e-29
Identity = 75/213 (35.21%), Postives = 118/213 (55.40%), Query Frame = 2 
Query:  101 LSLTVARYAKDDALGKYVALLTLSPIYLAVAYMTLVVVRRDLQVFVLAVGHLVDLAINKVLKTWFAEARP---PGCVNTGHGMPSNHTQYMFFFATFTALHLWNRASYGTGA-------KVGLTSALLCWAAGVGFSRMCLRCHTLNQVLVGAAVGSGGGALWYLLYAKASEDRAILVLSPLLPAVARWPISRALYIKDYSQVSHVLAFEHSN 709
            L+++   Y   D LGK++AL +L P+ L +A++TL++ RRDL       G  ++ AIN +LK    E RP      + + +GMPSNH Q+M+FFAT+ A  L  R  +G          K  +T  ++C AA V +SR+ L+ HT  QVL GA +G     +W+ +            L+PL P +A WPIS  L ++D + + +V+ FE+++
Sbjct:   26 LAISHVEYQTGDWLGKFLALTSLCPLALVIAFVTLILFRRDLHTITFLCGTALNEAINWILKHLIKELRPCRGREILYSEYGMPSNHAQFMWFFATYMAFFLLIRLHHGNSTYPLENAWKYIVTVFIICVAAIVSYSRIYLQYHTWTQVLCGACLGIFLACIWFAI--------TQFTLTPLFPIIAAWPISEFLMLRDTTLIPNVMWFEYTS 230
[Close]
BLAST of mRNA_S-dermatodea_contig1218.1362.1 vs. uniprot
Match: A0A182FQ63_ANOAL (Dolichyldiphosphatase n=6 Tax=Nyssorhynchus TaxID=44543 RepID=A0A182FQ63_ANOAL)

HSP 1 Score: 124 bits (310), Expect = 5.260e-29
Identity = 75/212 (35.38%), Postives = 112/212 (52.83%), Query Frame = 2 
Query:  101 LSLTVARYAKDDALGKYVALLTLSPIYLAVAYMTLVVVRRDLQVFVLAVGHLVDLAINKVLKTWFAEARPPGCVN--TGHGMPSNHTQYMFFFATFTAL-------HLWNRASYGTGAKVGLTSALLCWAAG--VGFSRMCLRCHTLNQVLVGAAVGSGGGALWYLLYAKASEDRAILVLSPLLPAVARWPISRALYIKDYSQVSHVLAFEH 703
            ++LT+  Y K D  GK +A ++L+P+ +   ++ L++ RRDL   V   G LV+ +IN +LK W  E RP         +GMPS+H+Q+M FFAT+  L       H+ N +S      V L    +CW A   V F R+ L  HT+ QV +GA +G+  G LW+ L           VL+P  P V  W IS    ++D + + +VL FE+
Sbjct:   31 ITLTLVEYPKGDLFGKLLAWISLAPLGIGAGFVALILFRRDLHTIVFFAGTLVNESINMILKHWIQEPRPVSRAQIWNEYGMPSSHSQFMCFFATYVLLFIFIRLHHMNNSSSARIERIVRLLMLAICWVAAFLVCFGRVYLLYHTVRQVTIGALIGTVTGGLWFAL--------THCVLTPYFPMVVTWRISELFLLRDTTLIPNVLWFEY 234
[Close]
BLAST of mRNA_S-dermatodea_contig1218.1362.1 vs. uniprot
Match: A0A485KZJ7_9STRA (Dolichyldiphosphatase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KZJ7_9STRA)

HSP 1 Score: 126 bits (317), Expect = 5.610e-29
Identity = 82/205 (40.00%), Postives = 117/205 (57.07%), Query Frame = 2 
Query:  104 SLTVARYAKDDALGKYVALLTLSPIYLAVAYMTLVVVRRDLQVFVLAVGHLVDLAINKVLKTWFAEARPPGCVNTGHGMPSNHTQYMFFFATFTALHLWNRASYGT-----GAKVGLTSALLCWAAGVGFSRMCLRCHTLNQVLVGAAVGSGGGALWYLLYAKASEDRAILVLSPLLPAVARWPISRALYIKDYSQVSHVLAFEH 703
            SLT   Y  DD LG+ +AL+TLSP+++ V Y TL++ +RDL +  + +G LV+  IN++LK    + RP G      GMPS H+Q+M FFAT+  L+  NR S         A VG+  AL C    V  SR+ L  HT+ QV+VGAAVG+G G LWY+      E+ AI    P  PA+A     +  +I+D S +  ++ F +
Sbjct:  155 SLTWVMYDVDDPLGQVLALVTLSPVFIMVMYATLILFQRDLHIIFMVLGQLVNEVINQILKRTIDQKRPDGADMEDAGMPSAHSQFMAFFATYVVLYTSNRMSKRREWEHKAAIVGVI-ALACL---VFVSRIRLGYHTVAQVVVGAAVGAGTGILWYIFM----ENMAI----PHFPAIASSSFCQQFFIRDASHIGDMVQFSY 347
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1218.1362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGQ9_ECTSI7.330e-11477.98Dolichyldiphosphatase n=1 Tax=Ectocarpus siliculos... [more]
A0A6G0XWR1_9STRA7.700e-3238.31Dolichyldiphosphatase n=1 Tax=Aphanomyces euteiche... [more]
Q7QCK1_ANOGA3.490e-3136.57Dolichyldiphosphatase n=16 Tax=Cellia TaxID=44534 ... [more]
A0A8K1FDI5_PYTOL4.450e-3035.16Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI001D07264A1.200e-2933.80dolichyldiphosphatase 1-like n=1 Tax=Chrysoperla c... [more]
A0A0P1AYE8_PLAHL1.570e-2939.00Dolichyldiphosphatase n=1 Tax=Plasmopara halstedii... [more]
E0VVJ1_PEDHC1.700e-2935.11Dolichyldiphosphatase n=1 Tax=Pediculus humanus su... [more]
UPI0015AE42EC4.550e-2935.21dolichyldiphosphatase 1-like isoform X1 n=2 Tax=St... [more]
A0A182FQ63_ANOAL5.260e-2935.38Dolichyldiphosphatase n=6 Tax=Nyssorhynchus TaxID=... [more]
A0A485KZJ7_9STRA5.610e-2940.00Dolichyldiphosphatase n=1 Tax=Aphanomyces stellatu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1218contigS-dermatodea_contig1218:6769..11653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score342.8
Seed ortholog evalue1.3e-91
Seed eggNOG ortholog2880.D7FGQ9
Preferred nameDOLPP1
KEGG rclassRC00002,RC00004,RC00014,RC00141
KEGG koko:K01074,ko:K07252,ko:K08658
KEGG ReactionR01004,R01274,R09845
KEGG Pathwayko00062,ko00510,ko00900,ko01100,ko01130,ko01212,ko04142,map00062,map00510,map00900,map01100,map01130,map01212,map04142
GOsGO:0000003,GO:0002084,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006489,GO:0006490,GO:0006629,GO:0006638,GO:0006639,GO:0006643,GO:0006644,GO:0006651,GO:0006665,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006885,GO:0007035,GO:0008150,GO:0008152,GO:0008195,GO:0008474,GO:0008610,GO:0008654,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009507,GO:0009536,GO:0009856,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016311,GO:0016462,GO:0016787,GO:0016788,GO:0016790,GO:0016791,GO:0016817,GO:0016818,GO:0019538,GO:0019637,GO:0019725,GO:0022414,GO:0030003,GO:0030004,GO:0030148,GO:0030163,GO:0030176,GO:0030641,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0034645,GO:0035601,GO:0036211,GO:0042157,GO:0042159,GO:0042175,GO:0042578,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044706,GO:0045017,GO:0045851,GO:0046339,GO:0046460,GO:0046463,GO:0046465,GO:0046467,GO:0046486,GO:0047874,GO:0048856,GO:0048868,GO:0048878,GO:0050801,GO:0051452,GO:0051453,GO:0051704,GO:0055067,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0070085,GO:0071704,GO:0090407,GO:0098599,GO:0098732,GO:0098734,GO:0098771,GO:0098827,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576
EggNOG free text desc.dolichyldiphosphatase activity
EggNOG OGsCOG0671@1,KOG3146@2759
EC3.1.2.22,3.6.1.43
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01004
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiondolichyldiphosphatase
Ec32 orthologEc-04_001210.1
Exons9
Model size1334
Cds size717
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924235.0348341-UTR-S-dermatodea_contig1218:6768..68321622924235.0348341-UTR-S-dermatodea_contig1218:6768..6832Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1218 6769..6832 +
1694079113.7104635-UTR-S-dermatodea_contig1218:6768..68321694079113.7104635-UTR-S-dermatodea_contig1218:6768..6832Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1218 6769..6832 +
1622924235.1334803-UTR-S-dermatodea_contig1218:11100..116531622924235.1334803-UTR-S-dermatodea_contig1218:11100..11653Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1218 11101..11653 +
1694079113.8472679-UTR-S-dermatodea_contig1218:11100..116531694079113.8472679-UTR-S-dermatodea_contig1218:11100..11653Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1218 11101..11653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924235.0470963-CDS-S-dermatodea_contig1218:6832..68801622924235.0470963-CDS-S-dermatodea_contig1218:6832..6880Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1218 6833..6880 +
1694079113.7570703-CDS-S-dermatodea_contig1218:6832..68801694079113.7570703-CDS-S-dermatodea_contig1218:6832..6880Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1218 6833..6880 +
1622924235.0557394-CDS-S-dermatodea_contig1218:7096..71611622924235.0557394-CDS-S-dermatodea_contig1218:7096..7161Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1218 7097..7161 +
1694079113.7687576-CDS-S-dermatodea_contig1218:7096..71611694079113.7687576-CDS-S-dermatodea_contig1218:7096..7161Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1218 7097..7161 +
1622924235.0657618-CDS-S-dermatodea_contig1218:7442..75181622924235.0657618-CDS-S-dermatodea_contig1218:7442..7518Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1218 7443..7518 +
1694079113.7799447-CDS-S-dermatodea_contig1218:7442..75181694079113.7799447-CDS-S-dermatodea_contig1218:7442..7518Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1218 7443..7518 +
1622924235.075711-CDS-S-dermatodea_contig1218:7967..80281622924235.075711-CDS-S-dermatodea_contig1218:7967..8028Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1218 7968..8028 +
1694079113.7924335-CDS-S-dermatodea_contig1218:7967..80281694079113.7924335-CDS-S-dermatodea_contig1218:7967..8028Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1218 7968..8028 +
1622924235.0832477-CDS-S-dermatodea_contig1218:8347..84381622924235.0832477-CDS-S-dermatodea_contig1218:8347..8438Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1218 8348..8438 +
1694079113.8012345-CDS-S-dermatodea_contig1218:8347..84381694079113.8012345-CDS-S-dermatodea_contig1218:8347..8438Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1218 8348..8438 +
1622924235.0924423-CDS-S-dermatodea_contig1218:9588..96661622924235.0924423-CDS-S-dermatodea_contig1218:9588..9666Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1218 9589..9666 +
1694079113.8098729-CDS-S-dermatodea_contig1218:9588..96661694079113.8098729-CDS-S-dermatodea_contig1218:9588..9666Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1218 9589..9666 +
1622924235.1021376-CDS-S-dermatodea_contig1218:10024..101421622924235.1021376-CDS-S-dermatodea_contig1218:10024..10142Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1218 10025..10142 +
1694079113.8186517-CDS-S-dermatodea_contig1218:10024..101421694079113.8186517-CDS-S-dermatodea_contig1218:10024..10142Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1218 10025..10142 +
1622924235.11567-CDS-S-dermatodea_contig1218:10615..106901622924235.11567-CDS-S-dermatodea_contig1218:10615..10690Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1218 10616..10690 +
1694079113.8279388-CDS-S-dermatodea_contig1218:10615..106901694079113.8279388-CDS-S-dermatodea_contig1218:10615..10690Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1218 10616..10690 +
1622924235.1238215-CDS-S-dermatodea_contig1218:10995..111001622924235.1238215-CDS-S-dermatodea_contig1218:10995..11100Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1218 10996..11100 +
1694079113.8373115-CDS-S-dermatodea_contig1218:10995..111001694079113.8373115-CDS-S-dermatodea_contig1218:10995..11100Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1218 10996..11100 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1218.1362.1prot_S-dermatodea_contig1218.1362.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1218 6833..11100 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1218.1362.1

>prot_S-dermatodea_contig1218.1362.1 ID=prot_S-dermatodea_contig1218.1362.1|Name=mRNA_S-dermatodea_contig1218.1362.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=239bp
MVVDPCDEDYAYLSLTVARYAKDDALGKYVALLTLSPIYLAVAYMTLVVV
RRDLQVFVLAVGHLVDLAINKVLKTWFAEARPPGCVNTGHGMPSNHTQYM
FFFATFTALHLWNRASYGTGAKVGLTSALLCWAAGVGFSRMCLRCHTLNQ
VLVGAAVGSGGGALWYLLYAKASEDRAILVLSPLLPAVARWPISRALYIK
DYSQVSHVLAFEHSNLHGSTHQQGSGGSARRGPSKKAL*
back to top

mRNA from alignment at S-dermatodea_contig1218:6769..11653+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1218.1362.1 ID=mRNA_S-dermatodea_contig1218.1362.1|Name=mRNA_S-dermatodea_contig1218.1362.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4885bp|location=Sequence derived from alignment at S-dermatodea_contig1218:6769..11653+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCTGGGAAGCTCTGAGGGTGGAATCTTACCTCCGGAGCGCAGTGTTCCT
GTGTACCGTGCAAGATGGTGGTAGATCCATGCGACGAAGACTATGCCTAC
CTTAGTTTAACGGTGAGTTACCACCTGACGTCGCGATCAAACTTTCAAAA
CTCGCGTCACACACACGAGCATTATCGTAAGATCTACGTTTTGGTGGAAA
GGTGTATGGTATACAAGCTTGTATAAGTTGGCGATGGCAAATCTGCTCTG
TTGTTGATTCAGGATGTCATCCCAGCAGCACTCGGCTCTCATCCGCACTC
GCGACCTTACGCTTCGGTGTGTGTCCAGGTGGCGCGCTATGCTAAGGATG
ATGCGCTTGGTAAATACGTCGCACTCCTCACCCTTTCTCCCATGTGAGTT
TCTTGTTTCTGGAATAGCGAGATCGATAGAGAGGGACTGGGCATCGCATC
CGGCATCGTGCATGATGGCATTGTGCAGCTGCCAGCATGTGGAGCTGCCG
AATGCATCAGGCTTTGGGTTGGGTGGGCCTGTTTGCATCATGTGCGCATA
TGTTAATTGCGGTGCTGCTCGTTTTGAAGGAGCGTGGACGGCCACTTTCG
CGTCATGCAACACAAGAAGCATAACATTTTCCATCTTCAGCATGCCTGCC
ATCTGCTATCATACCCCCTCGCAGATATCTGGCGGTGGCCTACATGACCC
TCGTTGTCGTTCGGAGGGATCTTCAGGTGTTCGTCTTAGCCGTCGGCCAT
GTGAGTTTCGCGCTTCAATCAGGCGCTGCTTTACTAGGCTGCGCCCCCCG
CTGTTGGCACGTTTCACCCGATTTACAGTCCACAGCGCGCCGACCCCTTG
AGCCGCGCCGCATGTGTCTTGAGCACCAGTGTGTCAGGAGAGAGAGGGTT
ATTCAGCGGTACCACCTGGCCCAAAATGACTTCCAACGCCGTCAGTTGGA
CGGCGGATCTAAGAGAAAAATGCCTAGTTGCAGTTATGTGCTAATTCTAT
CCGTGGTGATGGGGTTAGCATCTTCGGCTCAGACCTGGTCTCTAGTGAAA
CACAAAAACAAGCGCCAGGCACCGGTATAAGCATGAGAGAATCACTTAAC
ATCGCCGCCCTTCCGCCCTTCTCTATTGTTCGGCCACCCACTATGTACTG
GAACGCCTCCCGTGACCTTCCTATCCGGTGCCGAATTCTCCACCGAAAGC
TGGTCGACCTTGCGATCAACAAAGTCCTCAAGACGTGGTTTGCTGAAGCG
CGTCCACCAGGTGCGAAAGCGTGAAGGCAACGCCTGGACTAGAAGTAGTA
GCGCCCGCACGGTCGTCTGCAGTTGCTACAATGTGGAAGATGCGTGTGCG
TACAGAGTACAGTGGCTGCGCTTCAAGATTGGCTGCACTTGTGCTAGCAT
GGTTATGCAAGGCGTCCCTATTGGAGACGTCGTATTTGTGCGGAAGCAGG
ATTGTGAACGCACTTGCGAACTTCCACTCATCAAGACTAAACTTATCTAA
ACACCCCTAATCGATTCAACTGGATACTGAGCAGAAAGCCTCTTTACATA
CGTTCCTCCTCTTCCTTCCCACGCTGCAGGGTGCGTCAATACGGGCCACG
GAATGCCTTCGAATCACACGCAGTACATGTTCTTCTTCGCCACCTTCACC
GCGCTGCACCTGTGGAACAGGTAGGTGTCACATCGCGACCCTGGAAGATT
CGATTTATAGCGTGTGTCATAGAGAGTAGTTTTCGGCAGTGGGTTGTGTT
TGCACCTGCCACCTCGTATCGAACGTATTGAGACCACTCGTAAATCCATA
CCGACGTTGCTAACTATTCGTTTTCTAAGAGCCTAAGTCTTCATTGATGG
CGACTGTGTAATGAAAGCCTTCACAGTTGCTAATTATGCTCGCCTTTTCC
TGTTACCCTGGACCATCTCATCAGCGATATGGTCGGCGGTGCATGCGTAT
GATATGTGTTACGACGATAGAGGATGTAATTGGGGGACCTGTCATTGCAC
CGCATTGGGTTTCCGGTATCGGGATGTTTGCGATTTGGTTCCATAACTTA
GTACTTGGCTCTAGCCTGGTTCTGTGCGCTTAATCAATCAAGTGAGTGGA
ATCAACGTGTGATGAAGAGTGCAATACGAGACACGAGACCTACGCCCTGT
CTAGAATAGTCCAAGCATCTTTGCAACTGGCGTCGACGGCAGGACTACTG
TACATACGCTCATGTTACCGCAATATTTTCGAGGGAGAACGCGATATTTT
ATTCGGCCAAGGCATGGGGAAACAGGAGCAGCGCAGGCGAGCGGCAGCTG
CCGGGCAAGGAGAGAAAGGGGGGCCGACGAAGAACCGAGATATCCCGTTC
ACTATACTTGTGGCCGTTATTAATGGGATGCCTTGGCTCTCCGTCCTTCC
GTCCCTCTCGCTCTTCCCCTCCGGTAGCTACCGTGCGTCCTTTTTTTGTT
CCTGTTCCTGCATTTGTTTGCCTTTACATAAGCTTACAGAGTATCCCGTG
GGAGCGTTTATCTGACGAATACTATTCTGCTACCCGCCTCGATACGAAGT
ACAGTATGGCGAAACGTGTGTGGCTGGCATAGCTGTCCTTGCGTAGGATG
TGTGTCTTCCCGCAAGCCAAGCGTACGTAGCTCAAACCTTGGAAGTCAAT
TGCGGGACTAATGGCAAGTAATTCCAAGGAGCTCGTGTTGGTGTTGGCAT
TTTTCTGCAGTACAAAACTCAAGTAAACTCAGGCCGTGCGCCCTCTCCTC
GATCGCTTGCATCACCTCCTCGCGACCCCCCTCCACCTCGATACCTTCGT
GTTCTTGCGATGTCTGGCAGGGCTTCTTACGGCACAGGGGCCAAGGTGGG
CTTGACCTCCGCCCTGCTTTGTTGGGCGGCTGGTGTAGGTTTCTCGCGGT
GAGTTGTGATGGCGTTCACGCCCATGCTTGATGTCCCTGTGTTTTACTCG
ACGCTTTCCGATCAGCAGTCCTTGTTCAAGCCTCCTGAGGAGACATCAAA
CCCTTCTCAAGGTTACAACCTTTCGCAGATATCTGTCCACAGCGGGATTG
TGTGTTCCATACGACAAAATTTTGATCGCCTTCCTGCTCAGATAACGACC
GCGGCGTTTCTCGCCCGACGAAGTAATGGTGTGCCTAGAGACGCACGAAA
CCGTGACTCGTATAACTGGTCGCGCTCGATTACCACGGCAGCTTGTGCTT
CTAGTCGGTCCTGTTGACCTCGGCGTTGCCTTTCGTCCGTGCGCTGCTGT
TACCAGGATGTGCCTTAGGTGTCACACTCTCAACCAGGTCCTGGTAGGCG
CCGCCGTCGGCAGCGGTGGAGGAGCTTTATGGTACCTCCTATACGCGAAG
GCGAGTGAGGATCGAGCGATACTCGTGTTGCAAGTGTAGAAACTTATTCG
GTGCCTGTGAGCGTTGTGCCCTACCGCTGCGCATGTTCCCACGGCTCTGA
CTGGCTGTAAGCATGGCTCGGCATCAAACGCGGACCGTTACCTCGGGTTG
CGATCCACCCTGAATACTCCACTTTAAGACATGCTGTCCTTCCGAGCCTG
CCAACTGGGACGCAGCCTGGAAGTGGTACCTAACATTTGTTGTACTCGCA
GCTTTAAATGTGTCGCGTGCGTGGAGAAATGGAAATCGGCGAGCCGCGGG
AACCATGAAACCATATTCCGAAGTATCGCAGGCAAGTACCCGAGAATCCC
CTGTGGCTACAGACGGATCTATGATGGACATATTATTAAGAAATACGACG
ACAATTGTAAGGTATTCTGCATGTACGTGTACCGATGACTGTCCTTCCTG
GTACGCGAGGGCCCTCTTACTCCGAATCTGGCATTTCTTGTCCCCAGGTT
TTGTCGCCGTTGCTCCCGGCCGTGGCGAGGTGGCCAATATCTCGGGCGTT
GTACATCAAAGACTACTCACAGGTGACAGTACAGCGCGACCGCGATGGGG
TTGAAGTGGAGAAGGACGGTCGTGTTCGGAATACCCTCCTTCGCGTGTAC
TGTAGCTGGCGCACGTCTTCAGCATACCTTGCCGGCACGACTTCGCAGAG
TGCACTCGCAATGCGTCGTGTTGGCGGCAGCGTGAATGTACACGGTGTTC
CGCAACCGCAGCCCGAGCGCGTGATGCAGGTCGTAGAGCGACACCCGGAA
TGTGGAATGTACATAGGTTGAGGCGAAGCGATATCGATTGACAAGCCTCT
TTGATTTTGACTACCACTCCTCAACAGGTTTCGCACGTGCTCGCGTTTGA
GCACTCCAACCTGCATGGTAGCACACATCAGCAAGGCAGCGGAGGGAGCG
CTCGGCGAGGTCCATCGAAGAAGGCACTCTAGTTTTTTTTTTCCGAGGGG
CATCTTACTAATTAGCGGAACTTGGGAGAATGTCGAAAAGGCACTAGAGC
TCTAGAGCTTTACTGCTGTTGCTCGTGGTTAGCTAAGCACAGTGATGTGT
CCATAGGGTAGGTCTGAACTCGCCTTACACCCTCAGCGGATGGCGGCCGA
ATCATGGCTTACGGTTTCGCACAAGGATTCATTGCATCGGCCGGTTGTTT
TGCACACGCGAGGCGGGAGAAGGTCGTCTAAATCAAGGGTATTCTGGATC
AGATACAGGAGCCTGTGGCTGCTTTGTCATCTGCGTCTTTCGTGCTGAAG
AAATCCCTAATGTTCAAGCAATGGGCAGGATATCCGCTCTGGTTTTCAGA
GCTATGGGCGGATGCTTTCTCTTTGGCTCGTTGGGGGCGGATGCGCTCGT
TGTAGCTCTGTTGACGGATTCCCCAAAGCCATGCTACTATTGTACGTACC
GGCCATATTGCACACTGCTCTGCTTTGCTGCCAATGGGTTGCGGGCCTAT
TCTGAATTAATCGTTAAAAAATCATGAACATGCAC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1218:6769..11653+

>mRNA_S-dermatodea_contig1218.1362.1 ID=mRNA_S-dermatodea_contig1218.1362.1|Name=mRNA_S-dermatodea_contig1218.1362.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1434bp|location=Sequence derived from alignment at S-dermatodea_contig1218:6769..11653+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGGTAGATCCATGCGACGAAGACTATGCCTACCTTAGTTTAACGAT
GGTGGTAGATCCATGCGACGAAGACTATGCCTACCTTAGTTTAACGGTGG
CGCGCTATGCTAAGGATGATGCGCTTGGTAAATACGTCGCACTCCTCACC
CTTTCTCCCATGTGGCGCGCTATGCTAAGGATGATGCGCTTGGTAAATAC
GTCGCACTCCTCACCCTTTCTCCCATATATCTGGCGGTGGCCTACATGAC
CCTCGTTGTCGTTCGGAGGGATCTTCAGGTGTTCGTCTTAGCCGTCGGCC
ATATATCTGGCGGTGGCCTACATGACCCTCGTTGTCGTTCGGAGGGATCT
TCAGGTGTTCGTCTTAGCCGTCGGCCATCTGGTCGACCTTGCGATCAACA
AAGTCCTCAAGACGTGGTTTGCTGAAGCGCGTCCACCAGCTGGTCGACCT
TGCGATCAACAAAGTCCTCAAGACGTGGTTTGCTGAAGCGCGTCCACCAG
GGTGCGTCAATACGGGCCACGGAATGCCTTCGAATCACACGCAGTACATG
TTCTTCTTCGCCACCTTCACCGCGCTGCACCTGTGGAACAGGGTGCGTCA
ATACGGGCCACGGAATGCCTTCGAATCACACGCAGTACATGTTCTTCTTC
GCCACCTTCACCGCGCTGCACCTGTGGAACAGGGCTTCTTACGGCACAGG
GGCCAAGGTGGGCTTGACCTCCGCCCTGCTTTGTTGGGCGGCTGGTGTAG
GTTTCTCGCGGGCTTCTTACGGCACAGGGGCCAAGGTGGGCTTGACCTCC
GCCCTGCTTTGTTGGGCGGCTGGTGTAGGTTTCTCGCGGATGTGCCTTAG
GTGTCACACTCTCAACCAGGTCCTGGTAGGCGCCGCCGTCGGCAGCGGTG
GAGGAGCTTTATGGTACCTCCTATACGCGAAGGCGAGTGAGGATCGAGCG
ATACTCGATGTGCCTTAGGTGTCACACTCTCAACCAGGTCCTGGTAGGCG
CCGCCGTCGGCAGCGGTGGAGGAGCTTTATGGTACCTCCTATACGCGAAG
GCGAGTGAGGATCGAGCGATACTCGTTTTGTCGCCGTTGCTCCCGGCCGT
GGCGAGGTGGCCAATATCTCGGGCGTTGTACATCAAAGACTACTCACAGG
TTTTGTCGCCGTTGCTCCCGGCCGTGGCGAGGTGGCCAATATCTCGGGCG
TTGTACATCAAAGACTACTCACAGGTTTCGCACGTGCTCGCGTTTGAGCA
CTCCAACCTGCATGGTAGCACACATCAGCAAGGCAGCGGAGGGAGCGCTC
GGCGAGGTCCATCGAAGAAGGCACTCTAGGTTTCGCACGTGCTCGCGTTT
GAGCACTCCAACCTGCATGGTAGCACACATCAGCAAGGCAGCGGAGGGAG
CGCTCGGCGAGGTCCATCGAAGAAGGCACTCTAG
back to top