mRNA_S-dermatodea_contig12175.1357.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12175.1357.1
Unique NamemRNA_S-dermatodea_contig12175.1357.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12175.1357.1 vs. uniprot
Match: D8LSY3_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSY3_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 3.400e-50
Identity = 92/138 (66.67%), Postives = 109/138 (78.99%), Query Frame = 1 
Query:    1 VVHAQVSELNPLKTTRRWAVRVGRAWVRRPHMRLAETIPDAEAKGSAWGTKVRERPFVCLVLVGRAASPPRVAEEGGQAVADAALNRRLMPLYLVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNYIAQTFG 414
            + +++V+E+NPL+TTR+WAVRVG+AWVRRPHMRLAET PDAE +  AW  K   R        G ++     + E  +A+ DAAL+RRL+PLY VFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNYIAQTFG
Sbjct:  191 LAYSEVAEVNPLRTTRKWAVRVGQAWVRRPHMRLAETSPDAEPRVPAWKAKEESRASAGANRYGGSSGNGLASAEAQKAIDDAALSRRLLPLYAVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNYIAQTFG 328
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BLAST of mRNA_S-dermatodea_contig12175.1357.1 vs. uniprot
Match: A0A6H5L781_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L781_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 1.010e-45
Identity = 90/138 (65.22%), Postives = 107/138 (77.54%), Query Frame = 1 
Query:    1 VVHAQVSELNPLKTTRRWAVRVGRAWVRRPHMRLAETIPDAEAKGSAWGTKVRERPFVCLVLVGRAASPPRVAEEGGQAVADAALNRRLMPLYLVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNYIAQTFG 414
            + +++V+E+NPL+TTR+WAVRVG+AWVRRPHMRLAET P AE +  AW  K   R          ++     + E  +A+ DAAL+RRL+PLY VFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNYIAQTFG
Sbjct:  189 LAYSEVAEVNPLRTTRKWAVRVGQAWVRRPHMRLAETSPGAEPRVPAWKAKAESRASAGANRYSGSSDNGLASAEAQKAIDDAALSRRLLPLYAVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNYIAQTFG 326
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BLAST of mRNA_S-dermatodea_contig12175.1357.1 vs. uniprot
Match: A0A482SL66_9ARCH (MFS transporter n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL66_9ARCH)

HSP 1 Score: 67.4 bits (163), Expect = 2.120e-10
Identity = 46/127 (36.22%), Postives = 73/127 (57.48%), Query Frame = 1 
Query:   88 PHMRLAETIPDAEAK------GSAWGTKVRERPFVCLVLVGRAASPPRVA---EEGGQAVADAA---------LNRRLMPLYLVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNYIAQTFG 414
            PH   ++ +  +E+       G++W  K+ ++ F    L+G  A   +     EE  +  AD+          + R+L+P Y+ F+LDA+ +G+ +P+LPFFVMGL A A QL++VVSSNYIAQ+ G
Sbjct:   17 PHSNQSDLLAYSESNKPEIMSGTSWYVKLGKK-FELSPLMGVNAPEKQKVNEDEEDNETQADSTDSDNKEVLGVPRQLLPYYVAFMLDAIAVGLVMPLLPFFVMGLGADAFQLSMVVSSNYIAQSIG 142
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BLAST of mRNA_S-dermatodea_contig12175.1357.1 vs. uniprot
Match: A0A4D9D6H6_9STRA (MFS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6H6_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 8.850e-9
Identity = 42/136 (30.88%), Postives = 67/136 (49.26%), Query Frame = 1 
Query:    7 HAQVSELNPLKTTRRWAVRVGRAWVRRPHMRLAETIPDAEAKGSAWGTKVRERPFVCLVLVGRAASPPRVAEEGGQAVADAALNRRLMPLYLVFVLDAVGLGVALPVLPFFVMGLKATALQLAIVVSSNYIAQTFG 414
            + +V+  +P +T R W +R  + W+  P   L   +P  + +        RE        +    +PPR                 L+P+++ F LDAVG G+A P+LPF++M L A A QL +V++ NY+AQT G
Sbjct:  147 YCKVNSRDPGRTDRSWLLRENKKWL--PATSLRVHVPGRQYEK-------REESASAAAALASIPTPPR-----------------LVPVFIAFFLDAVGTGLASPLLPFYIMSLGANAFQLGLVLAFNYLAQTIG 256
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12175.1357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSY3_ECTSI3.400e-5066.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L781_9PHAE1.010e-4565.22MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A482SL66_9ARCH2.120e-1036.22MFS transporter n=1 Tax=archaeon TaxID=1906665 Rep... [more]
A0A4D9D6H6_9STRA8.850e-930.88MFS domain-containing protein n=2 Tax=Monodopsidac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12175contigS-dermatodea_contig12175:219..1267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_001860.1
Exons2
Model size414
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924234.7801456-CDS-S-dermatodea_contig12175:218..4121622924234.7801456-CDS-S-dermatodea_contig12175:218..412Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12175 219..412 +
1694079113.5567842-CDS-S-dermatodea_contig12175:218..4121694079113.5567842-CDS-S-dermatodea_contig12175:218..412Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12175 219..412 +
1622924234.7888339-CDS-S-dermatodea_contig12175:1047..12671622924234.7888339-CDS-S-dermatodea_contig12175:1047..1267Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12175 1048..1267 +
1694079113.5664458-CDS-S-dermatodea_contig12175:1047..12671694079113.5664458-CDS-S-dermatodea_contig12175:1047..1267Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12175 1048..1267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12175.1357.1prot_S-dermatodea_contig12175.1357.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12175 219..1267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12175.1357.1

>prot_S-dermatodea_contig12175.1357.1 ID=prot_S-dermatodea_contig12175.1357.1|Name=mRNA_S-dermatodea_contig12175.1357.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=138bp
VVHAQVSELNPLKTTRRWAVRVGRAWVRRPHMRLAETIPDAEAKGSAWGT
KVRERPFVCLVLVGRAASPPRVAEEGGQAVADAALNRRLMPLYLVFVLDA
VGLGVALPVLPFFVMGLKATALQLAIVVSSNYIAQTFG
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mRNA from alignment at S-dermatodea_contig12175:219..1267+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12175.1357.1 ID=mRNA_S-dermatodea_contig12175.1357.1|Name=mRNA_S-dermatodea_contig12175.1357.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1049bp|location=Sequence derived from alignment at S-dermatodea_contig12175:219..1267+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGTACATGCCCAGGTGTCGGAACTTAACCCGCTAAAGACGACACGCAG
GTGGGCGGTTCGAGTGGGGCGAGCATGGGTGCGACGGCCGCACATGAGGC
TTGCCGAGACGATCCCGGATGCCGAGGCGAAAGGTTCGGCGTGGGGAACG
AAGGTGAGGGAAAGGCCCTTCGTTTGTTTGGTGCTGGTCGGTCGGTGATG
GCTCGAGAGGCCTCCCCGCCTTTGAGCGAGGCTCTCTTCTTCCACGAAAA
TGTTGTCCCCGGCCGTTGGATGTGGATGTACGTACACTCTGGGTTGTCCG
TGCGAGCGATGACGGGCCTTTGGTGATGCGTTGGATTGCGTTCCGGCTGT
AGCTCAGGATTTGAGGTCATCGAATGCGGACGGGTTCGTGGGTGACGAGG
TCGAGATGCCGACCGCTCCTGGCGTAATTCTCGCGAAAGTAAGCGCACGC
ATGGGGGTTGGGTGCACGCCGGTCTCGTGGGACCCCTCCCTAGCGGAGGT
CACCCCTTCCGCTGGGGGCGTCGATAATCTGACGGTGCTTTTGACACGCA
AAGCGTGCGCCCGCAAAAACAAAAACGCAACACCAACAACAAAACAGCCA
CATCGAAGAAAGCGCCGGGTATCTCGCCATCCGATCGACCACGCCCTGCG
TTTCCGTCCTTTCCTCGCCCACCCCCACGCTTCGCGCCGATATCTCTTTA
GGACGCATCATCCACGGGGTCGTCGGCGGCGGCGGCGGAGCTCGATCGTG
GCGACGCAGAAAGCAGCGGCGATCCGTCGTACGGCCTTGCGGGCGACCTG
GAGGGGCACCGCCATTCCGGGAGCGGAAGCGCGGCGTCGCCTCCGCGGGT
TGCCGAGGAAGGGGGACAAGCGGTCGCCGACGCGGCGCTGAACCGGCGGC
TTATGCCTCTGTATCTGGTGTTTGTGCTGGATGCGGTCGGGCTGGGCGTG
GCGCTGCCGGTGCTGCCGTTCTTCGTGATGGGGCTCAAGGCTACCGCGCT
GCAGCTGGCCATCGTGGTGTCGTCCAATTATATCGCCCAGACTTTCGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig12175:219..1267+

>mRNA_S-dermatodea_contig12175.1357.1 ID=mRNA_S-dermatodea_contig12175.1357.1|Name=mRNA_S-dermatodea_contig12175.1357.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at S-dermatodea_contig12175:219..1267+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGTACATGCCCAGGTGTCGGAACTTAACCCGCTAAAGACGACACGCAG
GTGGGCGGTTCGAGTGGGGCGAGCATGGGTGCGACGGCCGCACATGAGGC
TTGCCGAGACGATCCCGGATGCCGAGGCGAAAGGTTCGGCGTGGGGAACG
AAGGTGAGGGAAAGGCCCTTCGTTTGTTTGGTGCTGGTCGGTCGGTCGTA
CATGCCCAGGTGTCGGAACTTAACCCGCTAAAGACGACACGCAGGTGGGC
GGTTCGAGTGGGGCGAGCATGGGTGCGACGGCCGCACATGAGGCTTGCCG
AGACGATCCCGGATGCCGAGGCGAAAGGTTCGGCGTGGGGAACGAAGGTG
AGGGAAAGGCCCTTCGTTTGTTTGGTGCTGGTCGGTCGCGCGGCGTCGCC
TCCGCGGGTTGCCGAGGAAGGGGGACAAGCGGTCGCCGACGCGGCGCTGA
ACCGGCGGCTTATGCCTCTGTATCTGGTGTTTGTGCTGGATGCGGTCGGG
CTGGGCGTGGCGCTGCCGGTGCTGCCGTTCTTCGTGATGGGGCTCAAGGC
TACCGCGCTGCAGCTGGCCATCGTGGTGTCGTCCAATTATATCGCCCAGA
CTTTCGGTCGCGGCGTCGCCTCCGCGGGTTGCCGAGGAAGGGGGACAAGC
GGTCGCCGACGCGGCGCTGAACCGGCGGCTTATGCCTCTGTATCTGGTGT
TTGTGCTGGATGCGGTCGGGCTGGGCGTGGCGCTGCCGGTGCTGCCGTTC
TTCGTGATGGGGCTCAAGGCTACCGCGCTGCAGCTGGCCATCGTGGTGTC
GTCCAATTATATCGCCCAGACTTTCGGT
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