mRNA_S-dermatodea_contig12134.1330.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12134.1330.1
Unique NamemRNA_S-dermatodea_contig12134.1330.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12134.1330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12134contigS-dermatodea_contig12134:4595..5262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size318
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12134.1330.1prot_S-dermatodea_contig12134.1330.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12134 4687..5262 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924232.8425612-UTR-S-dermatodea_contig12134:4594..46861622924232.8425612-UTR-S-dermatodea_contig12134:4594..4686Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12134 4595..4686 +
1694079112.1974225-UTR-S-dermatodea_contig12134:4594..46861694079112.1974225-UTR-S-dermatodea_contig12134:4594..4686Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12134 4595..4686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924232.856096-CDS-S-dermatodea_contig12134:4686..48601622924232.856096-CDS-S-dermatodea_contig12134:4686..4860Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12134 4687..4860 +
1694079112.206389-CDS-S-dermatodea_contig12134:4686..48601694079112.206389-CDS-S-dermatodea_contig12134:4686..4860Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12134 4687..4860 +
1622924232.863979-CDS-S-dermatodea_contig12134:5211..52621622924232.863979-CDS-S-dermatodea_contig12134:5211..5262Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12134 5212..5262 +
1694079112.215092-CDS-S-dermatodea_contig12134:5211..52621694079112.215092-CDS-S-dermatodea_contig12134:5211..5262Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12134 5212..5262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12134.1330.1

>prot_S-dermatodea_contig12134.1330.1 ID=prot_S-dermatodea_contig12134.1330.1|Name=mRNA_S-dermatodea_contig12134.1330.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=75bp
MHPHGQVGFAILLLASRLTPSLATVLVYVPNSSGPAQSPTRFEDVPAMSN
LGPRISSRGFSGRLQIAKPDIYGCS
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mRNA from alignment at S-dermatodea_contig12134:4595..5262+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12134.1330.1 ID=mRNA_S-dermatodea_contig12134.1330.1|Name=mRNA_S-dermatodea_contig12134.1330.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=668bp|location=Sequence derived from alignment at S-dermatodea_contig12134:4595..5262+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGAAGTTCCGAAGCGCTAGCTCTCCTTCGACCGAACCACTAGCTCGTTC
TGCCTAGGCTCTTGGCCGGTGTGGAGGGGGCTAGTTGACGAGATGCATCC
TCATGGACAGGTTGGCTTCGCCATTCTCCTGCTGGCTTCGAGGCTCACCC
CCAGCTTGGCGACGGTCCTGGTCTACGTTCCTAATTCATCCGGGCCTGCG
CAATCGCCAACGCGGTTCGAGGATGTGCCCGCCATGAGCAACTTAGGGCC
GAGAATCTCAAGTCGGGTGAGCCTTTAGCGTTACCACGGGGTCAAGAGAA
GGCTCGCGGGGAAGTCCTCGTCAGTCGTACATATCTCTAGGTGGTGGATC
TTTTGGGACCTCTCTAATCGCTCGCGTTTCACTCTCATGTTTGACCTGGT
AAGTCTACTTGAACAGCATACTATAAGTAAGTACTAATAAAATACTGTGA
GTATAGAGCTATCAAAGGTTGTTCAACAACAATGCCTCTCTGTCTGCACG
TTGGCCCGGCACCATATCAAAGGTGGACGTTGAGAAGGAGCCAGCCAGAG
CTCAACGATCAACTCTGAACTCTCACCGATTTGTATCGTTCCATTTAATC
GGTCCTTCTCGAAGTAGGGATTCTCGGGGCGCCTCCAGATCGCGAAGCCA
GACATTTACGGGTGTTCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12134:4595..5262+

>mRNA_S-dermatodea_contig12134.1330.1 ID=mRNA_S-dermatodea_contig12134.1330.1|Name=mRNA_S-dermatodea_contig12134.1330.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at S-dermatodea_contig12134:4595..5262+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCATCCTCATGGACAGGTTGGCTTCGCCATTCTCCTGCTGGCTTCGAG
GCTCACCCCCAGCTTGGCGACGGTCCTGGTCTACGTTCCTAATTCATCCG
GGCCTGCGCAATCGCCAACGCGGTTCGAGGATGTGCCCGCCATGAGCAAC
TTAGGGCCGAGAATCTCAAGTCGGATGCATCCTCATGGACAGGTTGGCTT
CGCCATTCTCCTGCTGGCTTCGAGGCTCACCCCCAGCTTGGCGACGGTCC
TGGTCTACGTTCCTAATTCATCCGGGCCTGCGCAATCGCCAACGCGGTTC
GAGGATGTGCCCGCCATGAGCAACTTAGGGCCGAGAATCTCAAGTCGGGG
ATTCTCGGGGCGCCTCCAGATCGCGAAGCCAGACATTTACGGGTGTTCGG
GATTCTCGGGGCGCCTCCAGATCGCGAAGCCAGACATTTACGGGTGTTCG
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