prot_S-dermatodea_contig12122.1323.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig12122.1323.1
Unique Nameprot_S-dermatodea_contig12122.1323.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length219
Homology
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BLAST of mRNA_S-dermatodea_contig12122.1323.1 vs. uniprot
Match: A0A6H5JT44_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JT44_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 1.710e-71
Identity = 155/220 (70.45%), Postives = 184/220 (83.64%), Query Frame = 0 
Query:    1 DDGSARAIEPAAAAAAKAAGAHVKALEKKYGTNIKEAQLRFSSALGQGKYGANPTEMDMIMYDIKSFDQQVRKLATGKRLKRFRELLPGLNADKLFTDYPQVIMMDLKKVEERVQGLRELLSGSDVSSAVSIAPDLLLSDVQTCLRPRMTRLVVAMS-VNQLEGVXXXXXXXXXXXXXXXXXXXXXXXVVVPSLQYMLRCTSDHDDLGKRLFRDPSLLAV 219
            DDGS   +E ++AA  K A A++KALE+KYG  IKE QLRF+ A+ +GK G NP+E+DMI+YDIKSFDQQVRKLATG RLKRF+ELLPGL+ + LFT+YP V++MDLKKVE++V+ LRELL G  V+  VS+APDLLL+DVQTCLRPRMTRLV A++ V Q +G XXXXXXXXXXXXXXXXXXXXXXX  VPSLQYML+ TSDHD+L  RLFRDPSLL V
Sbjct:  428 DDGS---VEVSSAAEMKEASAYIKALERKYGKIIKETQLRFTPAVRRGKLGDNPSEVDMILYDIKSFDQQVRKLATGYRLKRFKELLPGLDTETLFTEYPNVLLMDLKKVEDKVEELRELLPGERVAGVVSVAPDLLLNDVQTCLRPRMTRLVAALTTVKQFQGXXXXXXXXXXXXXXXXXXXXXXXXXXVPSLQYMLQSTSDHDELATRLFRDPSLLVV 644
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12122.1323.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JT44_9PHAE1.710e-7170.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 171..202
e-value: 6.6
score: 15.7
coord: 127..159
e-value: 2500.0
score: 0.8
coord: 93..124
e-value: 72.0
score: 12.3
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 59..219
e-value: 2.8E-11
score: 45.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12122contigS-dermatodea_contig12122:109..6707 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12122.1323.1mRNA_S-dermatodea_contig12122.1323.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig12122 109..6707 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig12122.1323.1 ID=prot_S-dermatodea_contig12122.1323.1|Name=mRNA_S-dermatodea_contig12122.1323.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=219bp
DDGSARAIEPAAAAAAKAAGAHVKALEKKYGTNIKEAQLRFSSALGQGKY
GANPTEMDMIMYDIKSFDQQVRKLATGKRLKRFRELLPGLNADKLFTDYP
QVIMMDLKKVEERVQGLRELLSGSDVSSAVSIAPDLLLSDVQTCLRPRMT
RLVVAMSVNQLEGVLDADKVKSMVVRCPQLLLSDVRNVVVPSLQYMLRCT
SDHDDLGKRLFRDPSLLAV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf