mRNA_S-dermatodea_contig12106.1312.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12106.1312.1
Unique NamemRNA_S-dermatodea_contig12106.1312.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12106.1312.1 vs. uniprot
Match: A0A6H5JZH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH5_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 1.890e-55
Identity = 172/393 (43.77%), Postives = 203/393 (51.65%), Query Frame = 1 
Query:  424 SKEESQNQLVAYKTGLTMLVELCNELAAA----AAAATTPRGADTGGSAGMVVPARGEWATSPPAVESSRRVLAETAPAPAAAAETSPTDXXXXXXXAEPTGEAPPAPGAVESEQTTSSSSADVVRDESRGDAVAVARKEDPSAAEGAAAQHPEVEASAVG-------AASNAADATGPPTG-EGGFSPQQPXXXXXXXXXXXXXXXXXEVXXXXXXXXXXXXXXXXXXXXXXXXXGAEVEAVAGGKELAVVRPR--VKGVEKIRRVSEHVATHLRRSHARVEELLAFEALASVPRISMCSFDVQDIALFLPTMVGSPE-SSGGTVFLAFHVNCPNRYLSEESINTARQDLGAAPAYILGRIILVEQHVATEEPNPYNVASNTVYYVLTAENV 1557
            S +E++NQL AY+ GLTMLV+L ++   A      AA     A        V P     A   PAV +   V A TA A   A+ +SPTD           G   P P      Q T+    DV  D +  D    + +E  +  + A   HP    SAV        A    A+AT PP   +GG  P                    +                          G  VE   GG    V RP   + GVE+IRR +++VATHL+ +HA          LA+VPRISMCSF VQDIALFLPTMVGSP+ SSGG VFLAFHVNCPNRYLSEESIN AR+ LGA+PAYILGRIILVEQHVA+EEPNPYNVA NTVYYVLTAENV
Sbjct: 1030 SSKETKNQLAAYRAGLTMLVKLTDQHKLADQQRGGAAVGVASASAAXXXXXVQPG----AMEDPAVGTRATVTARTAAAEDPASPSSPTDSEGHPSP----GSDRPTPATAVDGQATAGGGGDV-GDAASPDVKEASERESTTVPDRAQEAHPAAAISAVEVDKDHATAKPAVAEATAPPEDRQGGARPA-----------------GEDSCSSPDHNEAASPERAATTPASTATGGTAVETAGGG---LVARPSGSLGGVERIRRAADYVATHLQYNHA----------LAAVPRISMCSFSVQDIALFLPTMVGSPDGSSGGPVFLAFHVNCPNRYLSEESINNARETLGASPAYILGRIILVEQHVASEEPNPYNVAPNTVYYVLTAENV 1383
[Close]
BLAST of mRNA_S-dermatodea_contig12106.1312.1 vs. uniprot
Match: D7FIX1_ECTSI (Autophagy-related protein 11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX1_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 2.400e-41
Identity = 163/407 (40.05%), Postives = 196/407 (48.16%), Query Frame = 1 
Query:  397 GRRGSRSNLSKEESQNQLVAYKTGLTMLVELCNE----------LAAAAAAATTPRGADTGGSAGMVVPARGEWATSPPAVESSRRVLAETAPAPAAAAETSPTDXXXXXXXAEPTGEAPPAPGAVESEQTTSSSSADVVRDESRGDAVAVARKEDPSAAEGAAAQHPEVEASAVG-------AASNAADATGPPTGEGGFSPQQPXXXXXXXXXXXXXXXXXEVXXXXXXXXXXXXXXXXXXXXXXXXXGAEVEAVAGGKELAVVRPRVK--GVEKIRRVSEHVATHLRRSHARVEELLAFEALASVPRISMCSFDVQDIALFLPTMVGSPE-SSGGTVFLAFHVNCPNRYLSEESINTARQDLGAAPAYILGRIILVEQHVATEEPNPYNVASNTVYYVLTAENV 1557
            GRRGS      +E++NQL AY+ GLTMLV+L ++           A   AAA     A     A +  PA G  AT+     ++R V AE   +P++    SP             G   P+P      Q T+    DV    S  DA   + +E  +  E A   HP    +AV        A   AA+AT P  GE      +P                 E                          G  VE   GG    V RP     GVE+IRR +++VATHL+ +HA          LA+VPRISMCSF VQ          GSPE SSGG V L FHVN PNRYLSE+SIN AR+ LGA+PAYILGRIILVEQHVA+EEPNPYNVA NTVYYVLTAENV
Sbjct:  871 GRRGS-----SKETKNQLAAYRAGLTMLVKLTDQHKLADQQRGGAAVGVAAAAAAEVASAVQPAMIEDPAGGTRATA-----TARTVAAEDPASPSSDYHPSP-------------GSDRPSPTTAVDGQATAGGGGDVGGAASP-DAKEASERESTTVPERAQETHPAPAITAVKVDKDHATAKPAAAEATAP--GEDRQGGARPAGEDSSSSPDHKEAVSPE--------------REATTAVSTATGGTAVETAGGG---LVARPSASLGGVERIRRAADYVATHLQYNHA----------LAAVPRISMCSFSVQG---------GSPEGSSGGPVVLGFHVNWPNRYLSEDSINNAREALGASPAYILGRIILVEQHVASEEPNPYNVAPNTVYYVLTAENV 1215
[Close]
BLAST of mRNA_S-dermatodea_contig12106.1312.1 vs. uniprot
Match: A0A329S4M2_9STRA (ATG11 domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S4M2_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 6.170e-18
Identity = 46/97 (47.42%), Postives = 65/97 (67.01%), Query Frame = 1 
Query: 1267 RISMCSFDVQDIALFLPTMVGSPESSGGTVFLAFHVNCPNRYLSEESINTARQDLGAAPAYILGRIILVEQHVATEEPNPYNVASNTVYYVLTAENV 1557
            +IS  SF V D+ALFLPT   +P S    V+LAFH+ CP+R+LSEESI++   D    P Y++GRI+L+++  ATE  NPY +   T +YVLT  ++
Sbjct:  122 KISFRSFSVNDLALFLPT--SAPGSDAQRVYLAFHLGCPHRFLSEESISSFSNDGQRYPDYVVGRIVLIDEQTATEGNNPYALHLGTTFYVLTVASL 216
[Close]
BLAST of mRNA_S-dermatodea_contig12106.1312.1 vs. uniprot
Match: A0A397E0U3_9STRA (ATG11 domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E0U3_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.930e-17
Identity = 42/93 (45.16%), Postives = 63/93 (67.74%), Query Frame = 1 
Query: 1267 RISMCSFDVQDIALFLPTMVGSPESSGGTVFLAFHVNCPNRYLSEESINTARQDLGAAPAYILGRIILVEQHVATEEPNPYNVASNTVYYVLT 1545
            +I+  SF   D+ALFLPT   + +++   ++LAFH+ CPNR+LS+ESI T  Q     P YILGRI+ +++ VA++  NPY + + T +YVLT
Sbjct:  151 KIAFRSFSYNDLALFLPTFAPT-DAAAAKIYLAFHLGCPNRFLSDESITTFYQMHNRYPEYILGRIVFIDERVASDRDNPYRLIAGTTFYVLT 242
[Close]
BLAST of mRNA_S-dermatodea_contig12106.1312.1 vs. uniprot
Match: A0A1V9Y798_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y798_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 5.360e-17
Identity = 47/93 (50.54%), Postives = 63/93 (67.74%), Query Frame = 1 
Query: 1267 RISMCSFDVQDIALFLPTMVGSPESSGGTVFLAFHVNCPNRYLSEESINTARQDLGAAPAYILGRIILVEQHVATEEPNPYNVASNTVYYVLT 1545
            +I+  SF+  D+ALFLPT   S + S   V+LAFH+ CPNR+LS+ESI+T  Q     P YILGRI+ +++ VATE  NPY +   T +YVLT
Sbjct:  999 KIAFRSFEFDDLALFLPTFAPS-DVSAPKVYLAFHLGCPNRFLSDESISTFYQTQNQYPEYILGRIVFIDERVATERDNPYRLILGTTFYVLT 1090
[Close]
BLAST of mRNA_S-dermatodea_contig12106.1312.1 vs. uniprot
Match: V9FBB8_PHYPR (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora parasitica P1569 TaxID=1317065 RepID=V9FBB8_PHYPR)

HSP 1 Score: 93.2 bits (230), Expect = 3.930e-16
Identity = 46/97 (47.42%), Postives = 65/97 (67.01%), Query Frame = 1 
Query: 1267 RISMCSFDVQDIALFLPTMVGSPESSGGTVFLAFHVNCPNRYLSEESINTARQDLGAAPAYILGRIILVEQHVATEEPNPYNVASNTVYYVLTAENV 1557
            +IS  SF V D+ALFLPT   +P S    V+LAFH+ CP+R+LSEESI++   D    P Y++GRI+L+++  ATE  NPY +   T +YVLT  ++
Sbjct:  702 KISFRSFSVNDLALFLPT--SAPGSDAQRVYLAFHLGCPHRFLSEESISSFSNDGQRYPDYVVGRIVLIDEQTATEGNNPYALHLGTTFYVLTVASL 796
[Close]
BLAST of mRNA_S-dermatodea_contig12106.1312.1 vs. uniprot
Match: A0A3R7K0T3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K0T3_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 4.020e-16
Identity = 46/97 (47.42%), Postives = 65/97 (67.01%), Query Frame = 1 
Query: 1267 RISMCSFDVQDIALFLPTMVGSPESSGGTVFLAFHVNCPNRYLSEESINTARQDLGAAPAYILGRIILVEQHVATEEPNPYNVASNTVYYVLTAENV 1557
            +IS  SF V D+ALFLPT   +P S    V+LAFH+ CP+R+LSEESI++   D    P Y++GRI+L+++  ATE  NPY +   T +YVLT  ++
Sbjct:  724 KISFRSFSVNDLALFLPT--SAPGSDAQRVYLAFHLGCPHRFLSEESISSFSNDGQRYPDYVVGRIVLIDEQTATEGNNPYALHLGTTFYVLTVASL 818
[Close]
BLAST of mRNA_S-dermatodea_contig12106.1312.1 vs. uniprot
Match: A0A6G0WZC7_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZC7_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 4.040e-16
Identity = 43/92 (46.74%), Postives = 62/92 (67.39%), Query Frame = 1 
Query: 1270 ISMCSFDVQDIALFLPTMVGSPESSGGTVFLAFHVNCPNRYLSEESINTARQDLGAAPAYILGRIILVEQHVATEEPNPYNVASNTVYYVLT 1545
            I+  SF   D+ALFLPT   + +++   ++LAFH+ CPNR+LS+ESI T  Q     P YILGRI+ +++ VA+E  NPY + + T +YVLT
Sbjct:  733 IAFRSFSYNDLALFLPTFAPN-DTNAAKIYLAFHLGCPNRFLSDESITTFYQTQNRYPEYILGRIVFIDERVASERDNPYRLITGTTFYVLT 823
[Close]
BLAST of mRNA_S-dermatodea_contig12106.1312.1 vs. uniprot
Match: A0A6A3EVJ5_9STRA (ATG11 domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3EVJ5_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 4.150e-16
Identity = 46/97 (47.42%), Postives = 65/97 (67.01%), Query Frame = 1 
Query: 1267 RISMCSFDVQDIALFLPTMVGSPESSGGTVFLAFHVNCPNRYLSEESINTARQDLGAAPAYILGRIILVEQHVATEEPNPYNVASNTVYYVLTAENV 1557
            +IS  SF V D+ALFLPT   +P S    V+LAFH+ CP+R+LSEESI++   D    P Y++GRI+L+++  ATE  NPY +   T +YVLT  ++
Sbjct:  762 KISFRSFSVNDLALFLPT--SAPGSDAQRVYLAFHLGCPHRFLSEESISSFSNDGQRYPDYVVGRIVLIDEQTATEGNNPYALHLGTTFYVLTVASL 856
[Close]
BLAST of mRNA_S-dermatodea_contig12106.1312.1 vs. uniprot
Match: D0MQJ2_PHYIT (Uncharacterized protein n=42 Tax=Phytophthora TaxID=4783 RepID=D0MQJ2_PHYIT)

HSP 1 Score: 93.2 bits (230), Expect = 4.250e-16
Identity = 46/97 (47.42%), Postives = 65/97 (67.01%), Query Frame = 1 
Query: 1267 RISMCSFDVQDIALFLPTMVGSPESSGGTVFLAFHVNCPNRYLSEESINTARQDLGAAPAYILGRIILVEQHVATEEPNPYNVASNTVYYVLTAENV 1557
            +IS  SF V D+ALFLPT   +P S    V+LAFH+ CP+R+LSEESI++   D    P Y++GRI+L+++  ATE  NPY +   T +YVLT  ++
Sbjct:  790 KISFRSFSVNDLALFLPT--SAPGSDAQRVYLAFHLGCPHRFLSEESISSFSNDGQRYPDYVVGRIVLIDEQTATEGNNPYALHLGTTFYVLTVASL 884
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12106.1312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZH5_9PHAE1.890e-5543.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIX1_ECTSI2.400e-4140.05Autophagy-related protein 11 n=1 Tax=Ectocarpus si... [more]
A0A329S4M2_9STRA6.170e-1847.42ATG11 domain-containing protein n=1 Tax=Phytophtho... [more]
A0A397E0U3_9STRA3.930e-1745.16ATG11 domain-containing protein (Fragment) n=2 Tax... [more]
A0A1V9Y798_9STRA5.360e-1750.54Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
V9FBB8_PHYPR3.930e-1647.42Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A3R7K0T3_9STRA4.020e-1647.42Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A6G0WZC7_9STRA4.040e-1646.74Ubiquitin-like domain-containing protein n=1 Tax=A... [more]
A0A6A3EVJ5_9STRA4.150e-1647.42ATG11 domain-containing protein n=6 Tax=Phytophtho... [more]
D0MQJ2_PHYIT4.250e-1647.42Uncharacterized protein n=42 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12106contigS-dermatodea_contig12106:131..6705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue6.4e-17
Seed eggNOG ortholog42099.EPrPV00000014201
KEGG koko:K08330
KEGG TC9.A.15.1
KEGG Pathwayko04136,ko04138,ko04139,map04136,map04138,map04139
GOsGO:0000045,GO:0000272,GO:0000407,GO:0000422,GO:0001932,GO:0001934,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005776,GO:0005911,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0006914,GO:0006996,GO:0007005,GO:0007033,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0009506,GO:0009893,GO:0009987,GO:0010150,GO:0010562,GO:0010604,GO:0015980,GO:0016020,GO:0016043,GO:0016052,GO:0016236,GO:0019220,GO:0019222,GO:0019899,GO:0019900,GO:0019901,GO:0022411,GO:0022607,GO:0030054,GO:0030242,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032947,GO:0032991,GO:0034045,GO:0042325,GO:0042327,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044424,GO:0044444,GO:0044464,GO:0045937,GO:0046983,GO:0048366,GO:0048367,GO:0048518,GO:0048522,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0055044,GO:0055114,GO:0060255,GO:0061695,GO:0061709,GO:0061723,GO:0061726,GO:0061912,GO:0061919,GO:0065007,GO:0070925,GO:0071704,GO:0071840,GO:0080090,GO:0090693,GO:0098805,GO:0099402,GO:1901575,GO:1902494,GO:1902554,GO:1902911,GO:1903008,GO:1905037,GO:1990234,GO:1990316
EggNOG free text desc.function. Source PGD
EggNOG OGs1ME3A@121069,28MXS@1,2QUG9@2759
Ec32 ortholog descriptionAutophagy-related protein 11
Ec32 orthologEc-07_007840.1
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03029,ko04131
Hectar predicted targeting categoryother localisation
Exons5
Model size1698
Cds size1299
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924231.6470916-UTR-S-dermatodea_contig12106:130..2651622924231.6470916-UTR-S-dermatodea_contig12106:130..265Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12106 131..265 -
1694079111.4730365-UTR-S-dermatodea_contig12106:130..2651694079111.4730365-UTR-S-dermatodea_contig12106:130..265Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12106 131..265 -
1622924231.7134197-UTR-S-dermatodea_contig12106:6441..67051622924231.7134197-UTR-S-dermatodea_contig12106:6441..6705Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12106 6442..6705 -
1694079111.5460901-UTR-S-dermatodea_contig12106:6441..67051694079111.5460901-UTR-S-dermatodea_contig12106:6441..6705Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12106 6442..6705 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924231.6586115-CDS-S-dermatodea_contig12106:265..3341622924231.6586115-CDS-S-dermatodea_contig12106:265..334Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12106 266..334 -
1694079111.4862232-CDS-S-dermatodea_contig12106:265..3341694079111.4862232-CDS-S-dermatodea_contig12106:265..334Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12106 266..334 -
1622924231.669847-CDS-S-dermatodea_contig12106:3535..37331622924231.669847-CDS-S-dermatodea_contig12106:3535..3733Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12106 3536..3733 -
1694079111.5000937-CDS-S-dermatodea_contig12106:3535..37331694079111.5000937-CDS-S-dermatodea_contig12106:3535..3733Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12106 3536..3733 -
1622924231.6809611-CDS-S-dermatodea_contig12106:4326..44041622924231.6809611-CDS-S-dermatodea_contig12106:4326..4404Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12106 4327..4404 -
1694079111.5122218-CDS-S-dermatodea_contig12106:4326..44041694079111.5122218-CDS-S-dermatodea_contig12106:4326..4404Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12106 4327..4404 -
1622924231.6915412-CDS-S-dermatodea_contig12106:5406..58411622924231.6915412-CDS-S-dermatodea_contig12106:5406..5841Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12106 5407..5841 -
1694079111.5251782-CDS-S-dermatodea_contig12106:5406..58411694079111.5251782-CDS-S-dermatodea_contig12106:5406..5841Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12106 5407..5841 -
1622924231.7022493-CDS-S-dermatodea_contig12106:5922..64411622924231.7022493-CDS-S-dermatodea_contig12106:5922..6441Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12106 5923..6441 -
1694079111.5365973-CDS-S-dermatodea_contig12106:5922..64411694079111.5365973-CDS-S-dermatodea_contig12106:5922..6441Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12106 5923..6441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12106.1312.1prot_S-dermatodea_contig12106.1312.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12106 266..6441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12106.1312.1

>prot_S-dermatodea_contig12106.1312.1 ID=prot_S-dermatodea_contig12106.1312.1|Name=mRNA_S-dermatodea_contig12106.1312.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=433bp
MVVREKGLDKDKGSGPVGGERSRRSVSDAAALPGAGRGSGTAALGRRGSR
SNLSKEESQNQLVAYKTGLTMLVELCNELAAAAAAATTPRGADTGGSAGM
VVPARGEWATSPPAVESSRRVLAETAPAPAAAAETSPTDAGGAAASAEPT
GEAPPAPGAVESEQTTSSSSADVVRDESRGDAVAVARKEDPSAAEGAAAQ
HPEVEASAVGAASNAADATGPPTGEGGFSPQQPGGGGGGGVTASPPPVAG
EVPAVPPRSPDESAAPPAAGDGAAAAAGAEVEAVAGGKELAVVRPRVKGV
EKIRRVSEHVATHLRRSHARVEELLAFEALASVPRISMCSFDVQDIALFL
PTMVGSPESSGGTVFLAFHVNCPNRYLSEESINTARQDLGAAPAYILGRI
ILVEQHVATEEPNPYNVASNTVYYVLTAENVC*
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mRNA from alignment at S-dermatodea_contig12106:131..6705-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12106.1312.1 ID=mRNA_S-dermatodea_contig12106.1312.1|Name=mRNA_S-dermatodea_contig12106.1312.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6575bp|location=Sequence derived from alignment at S-dermatodea_contig12106:131..6705- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCGAGGCCGAGAATGCTCGCCTCGCGTCCGCGCTCGCCGAGGCTAGAGC
TCGACTCGAGCGGCTCGAGTGCGACGCCCGAGAGAAAGAGGAGGGGCAGG
CGGAGGCGGAGGTGTCTGCCGCGACTCACGGACTCTCAGCCGCCCCAGCC
CCCGTCCGCGTGCAAGAGGGAGCGACTGCGGCGATAGCTGTGGCTGTACC
GGCGGCTGTAGCGGCTCCGGCGACCCGAACGCCGTCCGGGACGGAGGATG
ACGTTGCGACGCGAATGGTGGTCAGGGAGAAGGGGTTGGATAAGGATAAG
GGAAGCGGCCCGGTAGGTGGCGAGAGGAGCCGCCGCAGCGTCAGCGACGC
CGCCGCCCTCCCCGGTGCGGGGCGCGGCTCCGGGACGGCCGCTCTCGGCC
GGCGGGGGTCGAGGTCAAACCTGTCGAAGGAGGAGTCTCAGAACCAGCTG
GTGGCGTACAAGACCGGGCTGACCATGCTGGTCGAGCTCTGCAACGAGCT
GGCGGCGGCGGCGGCAGCGGCGACGACGCCTCGAGGTGCTGACACGGGTG
GCAGCGCGGGCATGGTAGTTCCCGCACGGGGAGAGTGGGCAACGAGCCCA
CCTGCGGTGGAATCCAGCCGCCGCGTACTAGCGGAAACCGCGCCGGCACC
TGCTGCTGCTGCCGAGACCTCCCCCACCGACGCGGGCGGCGCGGCGGCCT
CGGCGGAGCCGACGGGTGAGGCGCCACCAGCGCCCGGTGCCGTCGAATCG
GAGCAAACCACGTCGTCGTCGTCCGCGGATGTTGTTTATGCGGCGGAACG
AGTCATGGATGGGAACGGTGATAACCAAGACGGTGCCGCCGCTGCCACGG
ACGCTGTGACGGAGGTTCGAGACGAGAGCCGAGGCGACGCCGTAGCGGTG
GCACGGAAGGAGGACCCGTCGGCGGCCGAGGGAGCTGCGGCGCAACATCC
CGAAGTCGAAGCCTCGGCGGTTGGCGCCGCGTCGAACGCGGCAGATGCAA
CGGGGCCACCCACCGGAGAGGGCGGATTTTCCCCCCAGCAGCCAGGAGGA
GGAGGAGGAGGAGGAGTGACGGCCTCGCCGCCACCCGTAGCTGGTGAAGT
CCCGGCGGTACCGCCAAGGTCGCCGGACGAGTCCGCGGCGCCCCCGGCCG
CTGGTGACGGGGCGGCGGCGGCGGCAGGGGCGGAAGTTGAGGCGGTCGCG
GGGGGCAAGGAGCTCGCCGTCGTGCGACCGAGGGTAAAGGGCGTCGAGAA
GATCAGGCGGGTGTCGGAGCACGTGGCCACTCATCTGCGGCGGAGTCACG
TGAGTTTTGTTTTTGTTTTGTTTTGATGGGTGTTAAATAGGAGGAGTGTA
CTGCTGTATTATAGAGAGCTTTTGTTAATGGTTGTGGCTGTTGCCGCGTT
GCAGCGACCTATTTCGTGTTTTTTGTTAAAAAGCGTGTCGATGATGAGAC
TTGCTTGCCGGGGCTTATTAACCCTTTTGGGACTAAAGTAGTTTTCGGGT
AACTGTTGGCTCTTATTATTTACCTTTTGGGACTAAGCCTAGGGACGAAA
CCTGTTTTCAGGTAACTGGGGACGAAACCTGTTTTTTTTTTTCTTTTGGC
TACCATAATAGCAAACAGTTACCCGAAAACTGCCTTAGTCCCAAAACAAA
AGGGTACATAATAATAGCAAACCGTTTCCCGAAAACAGCCTTAGTCCCAG
AAGGGTTAACGATGACCGGTGGCTGCGAACAAACACGTCCTCGACTCGTT
CGCGTGTTGTAGTTAGTGGGAAGCCTACGGCTACACGTCCAGGCGGGCGG
GGGGGCAAGCGAGCTGGTGGGGAACGCGTTGGTTGACACCCCTGGCCCGC
ATCCTCTCTGCGTACAACGGTCAAGTGGTGTCCCTCATCATCACAATTCA
TAATTTTTTCACTGCTGAGTTAAAGCTCTTTTTTATGCTGGTACTGTACT
ATACATGGGGGTACCGACCGATCCACAACAATACCACTTCCTCATGTGAC
CACGAGGTAGCGAGATCAGGCAGCAACCATTGATGGGTCCGGTCGGTTGG
TTGCAAGCGTGATGATAAAATCAAAACCGCGTACGATAAGAAAAAAATCA
AGAACCTAAACCGATTTGTGGGTCATCACACCTTCAACGGCGGCAAAAAC
CTAAAATCATCACCGCCCGCTGTTCCCGCTTCCCGTGTGTGCCCCTCCGC
TGCCCGATGCGACGACCCGCCGCCGCTCGCGTCCGCGTCCTCTCGCGCCG
TGGGTCCTGCGTTATTTTCCCTTGATACGTCCGCGTCTGTTTCTGCCGCA
GGCCCGCGTTGAGGAGCTCCTCGCGTTTGAGGCGCTCGCTTCCGTGCCGC
GGATCTCGATGTGCTCCTTCGACGTCCAGGTTTGTTTTCTCATGAGTTAG
GGGTCGGAATGGAGGGCGCAAAATAAGCGTTAAAACGGCACACAGAACAC
AGCACACACACACCCGGGTCCTGTCGTGTCCCGATGAGTTTTGAATTGTA
TGCTTTCTGTGTTGTGTGTTTATTTATTTTTATACAGTATATACTATTAC
TACAGTATTACTATTACTATTACTATTCGGAGGAACATAGTTAACAAGTC
CAAATCTCATGGCCAATAATATCATAGTACCCGACTGACTATTCCTGTTA
ATATTAATACCATAAATCCCCAAACAACAACAAAAATCTCATGAAAAACA
AAAAACACGAGATTATGGCCACATATTCATGAACGTGGACCTTAAAATCT
CGATAATTCCGGCCTCTTTTGATTTTTCTAGGTTGAGACTTGTCGCAAAT
TTGGGCAAATTTGGATCTTTCCTGTTAACTATGGTCCACCGTAATACTGT
ACTTCGAAGTATATACATACATACATACTCCGGAGTATAAAATAAAATAA
AATAAAATAAAATAATACACAAAAAAACGGTCGTAAAACTCACTTTTTTG
CTACCGGGTCGGTCGGTCGCAGGACATCGCGCTGTTCTTGCCGACGATGG
TTGGATCGCCCGAGAGCTCGGGCGGCACCGTGTTCCTCGCCTTTCACGTG
AACTGCCCTAACCGGTACCTGTCCGAGGAGAGCATCAACACCGCCCGCCA
AGACCTGGGCGCGGCCCCCGCGTACATTCTCGGCCGGATCATCTTGGTTG
AGCAGCACGTGGCGACCGAGGTGAGGCTTGGCCGATTTTCCGCGACAGCG
TGCGCCGCAACGGCGCGGCGAGGCGAGGCGCGGCTCGGCTCGGCTCGGCT
CGGCGCGGCGGTTTTGGGGGGTATTGTGGTGTCGGCCGTGATAAGGGCTG
TTTAGTACAACTAGTGGGTAGCCCACGGCTACGCCCGTGTGAGGTGTACA
GTCCGATGTGCCGACGGAACGCGACACGGAGGTCGAACGCGGTCGAGCTA
TACTGTGCGTGTCGCTGCTGTGCGTGTCGTTGCTGTGCGTGTCGCTGCTG
TGTTTTCGCTTTTATATTAAAAAAATAATATAAGATAGAACGCTCAACAC
AAACATGAAGTTGTTTGGCATCAGACAGCATCCTTGTCTAAAATGAAAAC
AGCAGTATATACACAATCGGTCTTTGTGGCTTTAATTAATAAGATACAAC
GGGGTACAGTACAGGCCCGCTCATAAAAAAACGCGCTTGTAAGAAAATCA
GGCTGAGATTTTTTTTAACAATTAGAAAGGTGGAGCCTCAGCGTCGAGCG
CCACACTAAACCCTATACAATAGGGTTCGCCCCGTATAAGAAACTCAGGC
TGAGCCTGATTTTCAGGTTCTTGTGGGCGGGCTTCTATTAATACTGTATG
CAGCAAAGAGGACCGAATTTCGGGTCAATAAGCGTATTAAGAGTCTTGTT
TTTAAACGTTCGCCTGGCGTGAAGGAAGACCTTGTTTTATTTTTTAATGA
AAACTTGTGAGAGAAGAGGTCTGATTTTTTAGTGGACATTGTTTTTTTCA
GGCCGGTAAGGTAAGGTAAGACTATTACTATTGCACATCTTGTCTTGTAA
ACAAAGGCCACATACTGCTGCTGTACACCACCATATTTGTTTTTTGGTGT
TTCGATAGTTGGGGTATTTATTATTTTTTTGCTGTCGTTTGGTACGTTTG
GTCCTGACTATTAATGTTAATATTTACGGAGGAACAGCGTTTTCATAATC
AGAGGACCAAATGTCATGACCATGAATACAATACAATACAATACAATATA
CCCAAACAAAACAAACAACAGAAGGGTCTCGCGAAGAAAAACAACACGAG
ATGTTGTCATGTACAACAACATCGACCATGAAATCTCGGTAATTCCGTTA
ATAGCCTATTTTTTGTTTTTTAGGTTGAGACTTGTGGCTAATTTGGACCT
GTTGTTATATTATAACTATGTTCTAGTCTATTCCCCCGTTATATTGATAG
TAGGTAGCCACGGGCTATTATTAGTATAACAAAGGGCTATTACAATATAT
TATATTATATTATATTATATTAATTGCCTACGCCGGTGAGGTGAAAAGCC
TCCACTCTAAATCGCAATTATTTTTGTCCAGAAATAAATCAGCTCCAAAT
GGCTATTAAAAATCGCAGTTATTTTTGTCCAGAAAGAAATCAGCTCTACA
TGGCTACTAAAAAAAAGGGTTCATTTGTTCCTTTAATGAACCCTTTTGGT
ACTATTACATTAATAGCCGGTTAGCACGTAATGAGGCGTGCTTGAATCGG
GGTCCTGGGGAACTCCATGGGCTATGACGCATGAATGAGAGACTGGAGAG
AACGGAGCGCAAGGGAAACGGGGCTGTAGCTGTCGACTGGCATCGAGAGA
GTTTTTGGTCGTTTCGGAGAGCCCTATTAATTATGAATACTAATTTAATG
TACCAGAAGGGTTAATTAATAAGGATTTAAGTACTGTAACTGTGTACCCC
CGTATGATAATAGTAAAGGTTTGGTCCTGATTACTAGTGATTACTAGTGA
TTACTAGTGATTACTACAGCAACTGCGTGTTACTACAGTTATATGTCTAA
TAAGAGTGCGTGCGAGCGAGCGAGCGTGCGTGGGTGCGTGAGTGCGAGCG
TCGTCCGAGGTCAGAGGTCAGGCCCTTTGGCGCTTTGTTTCGTTTCGTGA
GTAACGGGTCTGTGGACTATGACGCCTGGTGACCGTCGTCGGAGAGAGTC
CCCCCATCTCTCGGGTAACCGAGGTCCTGTTTTCCCGATGACACCCAAGG
TTTGGTAGGCCGGATATATCTGCTGAGTCACGGCAGGCAGGGTGCTTTCT
GCCGGGCACTATTTATACAGGTCCCGCACGCGCTCCACCTGCAGTCCACA
ATCCCGCCGGTCAACCCACCTTGGCTGAACCTTAGGATTCGGTCCGTGGG
CTGAGTGAACCTTGGGGGGTTCGGTCCGGTCCACACCAACCTGGTGTGCT
CATTGTGCCGCGATACCTTAACCATTTTAGAACTAAGGCTCTCCAAAACG
ACAAAAACAACTCCCTCGACGCAAGTCGACAGAGTAGTTACAGCCCCGCT
TCCCTCTGGCTCCGCTCTCTCCCTTACTCCTGCGTCATAACCTATGGGGT
TCCCCAGGGCTCCGCTTCAAGCACGCCTCATTACGTGCTAACGAGCGCTC
CAAACAGGGGGCTAGTACCAAGAGGGTTGAAGGCATCCCCTGAAACAAAA
TATTTGTAAAACACAGAGCGAGCGTTGGGGTCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCACCCGGAGAGAGGGGGTGTCGTTGTTTTTTTTTTGGGGGA
GGGACCCCCTTCTTGTCGTTTGGTGGCGGTTTCTGCGAGNNNNNNNNNNC
TTACAGAGCAAACAAACCCCCCAAAAAAGGGGGTAGTACAAAAGGGGTGG
AAGAACCCCCCCCAAAAAAAAAAATTTTTAAAACAAAGGAGGGGGGGGGG
GTCCCCCCCCCCCCCCCCCCCCTCCACGCTTCACAACGGAGAATTGGTGG
TCTCTTGTTTGTCTTGTGGAGAGACGCTCCCGATTTAGCTGTTGATGGCG
CGTTTCACGTGGTTCGGACCCCACCCGCACCACTCCCGTCGTTCACGACT
TTTTTTGTTTTTAAATAGCCGCTGCATTTTTACGGCTGCTGTATGTATAC
AAGTACACTATTGATGTATATACTATTAATACTGTATGTGGTTTTTTCCT
TCCGACTCTTGCTTTTGCGCATCTATCTGACCACAAGTCTGGAGGAAATA
TTTTACTCGATCGGCTATGATGGATATAGGTGTGAAAAAGTAATGAATGG
ACGGATGGATCGATCAATCAATCAATCCATCCATCGGTAAACGCTGCACT
TATTTAACGTGCCCCGTTGCTTGTTTCTTGCGTCGGCGCCTCCTCGCCTT
GCGTGCGTGTCGTGCGCACAGGAACCAAACCCATACAACGTCGCGAGCAA
CACGGTCTACTACGTCTTGACAGCAGAGAACGTGTGCTGACGAGCTTTTG
TGTGGGAAACTCAAAAGTGTTCCGTACGTTTCAGCCGCGGGTCGGTCGCG
TAACGCCATCGACGATTGGAACTCCGTGTGCCCTCTCGCTTTCCCGCCCG
TCGGGAACTGGCATCGGGGTGACGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12106:131..6705-

>mRNA_S-dermatodea_contig12106.1312.1 ID=mRNA_S-dermatodea_contig12106.1312.1|Name=mRNA_S-dermatodea_contig12106.1312.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2598bp|location=Sequence derived from alignment at S-dermatodea_contig12106:131..6705- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGGTCAGGGAGAAGGGGTTGGATAAGGATAAGGGAAGCGGCCCGGT
AGGTGGCGAGAGGAGCCGCCGCAGCGTCAGCGACGCCGCCGCCCTCCCCG
GTGCGGGGCGCGGCTCCGGGACGGCCGCTCTCGGCCGGCGGGGGTCGAGG
TCAAACCTGTCGAAGGAGGAGTCTCAGAACCAGCTGGTGGCGTACAAGAC
CGGGCTGACCATGCTGGTCGAGCTCTGCAACGAGCTGGCGGCGGCGGCGG
CAGCGGCGACGACGCCTCGAGGTGCTGACACGGGTGGCAGCGCGGGCATG
GTAGTTCCCGCACGGGGAGAGTGGGCAACGAGCCCACCTGCGGTGGAATC
CAGCCGCCGCGTACTAGCGGAAACCGCGCCGGCACCTGCTGCTGCTGCCG
AGACCTCCCCCACCGACGCGGGCGGCGCGGCGGCCTCGGCGGAGCCGACG
GGTGAGGCGCCACCAGCGCCCGGTGCCGTCGAATCGGAGCAAACCACGTC
GTCGTCGTCCGCGGATGTTATGGTGGTCAGGGAGAAGGGGTTGGATAAGG
ATAAGGGAAGCGGCCCGGTAGGTGGCGAGAGGAGCCGCCGCAGCGTCAGC
GACGCCGCCGCCCTCCCCGGTGCGGGGCGCGGCTCCGGGACGGCCGCTCT
CGGCCGGCGGGGGTCGAGGTCAAACCTGTCGAAGGAGGAGTCTCAGAACC
AGCTGGTGGCGTACAAGACCGGGCTGACCATGCTGGTCGAGCTCTGCAAC
GAGCTGGCGGCGGCGGCGGCAGCGGCGACGACGCCTCGAGGTGCTGACAC
GGGTGGCAGCGCGGGCATGGTAGTTCCCGCACGGGGAGAGTGGGCAACGA
GCCCACCTGCGGTGGAATCCAGCCGCCGCGTACTAGCGGAAACCGCGCCG
GCACCTGCTGCTGCTGCCGAGACCTCCCCCACCGACGCGGGCGGCGCGGC
GGCCTCGGCGGAGCCGACGGGTGAGGCGCCACCAGCGCCCGGTGCCGTCG
AATCGGAGCAAACCACGTCGTCGTCGTCCGCGGATGTTGTTCGAGACGAG
AGCCGAGGCGACGCCGTAGCGGTGGCACGGAAGGAGGACCCGTCGGCGGC
CGAGGGAGCTGCGGCGCAACATCCCGAAGTCGAAGCCTCGGCGGTTGGCG
CCGCGTCGAACGCGGCAGATGCAACGGGGCCACCCACCGGAGAGGGCGGA
TTTTCCCCCCAGCAGCCAGGAGGAGGAGGAGGAGGAGGAGTGACGGCCTC
GCCGCCACCCGTAGCTGGTGAAGTCCCGGCGGTACCGCCAAGGTCGCCGG
ACGAGTCCGCGGCGCCCCCGGCCGCTGGTGACGGGGCGGCGGCGGCGGCA
GGGGCGGAAGTTGAGGCGGTCGCGGGGGGCAAGGAGCTCGCCGTCGTGCG
ACCGAGGGTAAAGGGCGTCGAGAAGATCAGGCGGGTGTCGGAGCACGTGG
CCACTCATCTGCGGCGGAGTCACGTTCGAGACGAGAGCCGAGGCGACGCC
GTAGCGGTGGCACGGAAGGAGGACCCGTCGGCGGCCGAGGGAGCTGCGGC
GCAACATCCCGAAGTCGAAGCCTCGGCGGTTGGCGCCGCGTCGAACGCGG
CAGATGCAACGGGGCCACCCACCGGAGAGGGCGGATTTTCCCCCCAGCAG
CCAGGAGGAGGAGGAGGAGGAGGAGTGACGGCCTCGCCGCCACCCGTAGC
TGGTGAAGTCCCGGCGGTACCGCCAAGGTCGCCGGACGAGTCCGCGGCGC
CCCCGGCCGCTGGTGACGGGGCGGCGGCGGCGGCAGGGGCGGAAGTTGAG
GCGGTCGCGGGGGGCAAGGAGCTCGCCGTCGTGCGACCGAGGGTAAAGGG
CGTCGAGAAGATCAGGCGGGTGTCGGAGCACGTGGCCACTCATCTGCGGC
GGAGTCACGCCCGCGTTGAGGAGCTCCTCGCGTTTGAGGCGCTCGCTTCC
GTGCCGCGGATCTCGATGTGCTCCTTCGACGTCCAGGCCCGCGTTGAGGA
GCTCCTCGCGTTTGAGGCGCTCGCTTCCGTGCCGCGGATCTCGATGTGCT
CCTTCGACGTCCAGGACATCGCGCTGTTCTTGCCGACGATGGTTGGATCG
CCCGAGAGCTCGGGCGGCACCGTGTTCCTCGCCTTTCACGTGAACTGCCC
TAACCGGTACCTGTCCGAGGAGAGCATCAACACCGCCCGCCAAGACCTGG
GCGCGGCCCCCGCGTACATTCTCGGCCGGATCATCTTGGTTGAGCAGCAC
GTGGCGACCGAGGACATCGCGCTGTTCTTGCCGACGATGGTTGGATCGCC
CGAGAGCTCGGGCGGCACCGTGTTCCTCGCCTTTCACGTGAACTGCCCTA
ACCGGTACCTGTCCGAGGAGAGCATCAACACCGCCCGCCAAGACCTGGGC
GCGGCCCCCGCGTACATTCTCGGCCGGATCATCTTGGTTGAGCAGCACGT
GGCGACCGAGGAACCAAACCCATACAACGTCGCGAGCAACACGGTCTACT
ACGTCTTGACAGCAGAGAACGTGTGCTGAGAACCAAACCCATACAACGTC
GCGAGCAACACGGTCTACTACGTCTTGACAGCAGAGAACGTGTGCTGA
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