mRNA_S-dermatodea_contig1208.1295.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1208.1295.1
Unique NamemRNA_S-dermatodea_contig1208.1295.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1208.1295.1 vs. uniprot
Match: D8LSS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSS3_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 2.360e-9
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 QVLRAEREVTSELRRLSGLGVYPEAELARIRREHGNLATEWRKVV 135
            +VLRAE+EVT ELRRLS L VYP AELA IRREH  LATEW++V+
Sbjct:   12 KVLRAEKEVTLELRRLSNLEVYPAAELAHIRREHRALATEWQQVI 56
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1208.1295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSS3_ECTSI2.360e-973.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1208contigS-dermatodea_contig1208:469..1421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size410
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924230.1143332-CDS-S-dermatodea_contig1208:468..5971622924230.1143332-CDS-S-dermatodea_contig1208:468..597Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1208 469..597 +
1694079110.3497953-CDS-S-dermatodea_contig1208:468..5971694079110.3497953-CDS-S-dermatodea_contig1208:468..597Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1208 469..597 +
1622924230.1232498-CDS-S-dermatodea_contig1208:1141..14201622924230.1232498-CDS-S-dermatodea_contig1208:1141..1420Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1208 1142..1420 +
1694079110.3614793-CDS-S-dermatodea_contig1208:1141..14201694079110.3614793-CDS-S-dermatodea_contig1208:1141..1420Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1208 1142..1420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1208.1295.1prot_S-dermatodea_contig1208.1295.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1208 469..1420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1208.1295.1

>prot_S-dermatodea_contig1208.1295.1 ID=prot_S-dermatodea_contig1208.1295.1|Name=mRNA_S-dermatodea_contig1208.1295.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=136bp
QVLRAEREVTSELRRLSGLGVYPEAELARIRREHGNLATEWRKVVESGSD
YKGQAGEEDGDDLGNNTTTTTTTANNANNAGDKPIPSRQTPRPPHLLPSS
PVRAAKTAPAPSVGVVLAGVTLDGTSSHTPVGVSHG
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mRNA from alignment at S-dermatodea_contig1208:469..1421+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1208.1295.1 ID=mRNA_S-dermatodea_contig1208.1295.1|Name=mRNA_S-dermatodea_contig1208.1295.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=953bp|location=Sequence derived from alignment at S-dermatodea_contig1208:469..1421+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGCTGCGAGCGGAGAGGGAGGTAACTTCAGAACTGCGGCGACTATC
CGGCCTCGGTGTGTACCCCGAAGCAGAACTAGCAAGGATACGGCGGGAGC
ACGGCAACTTGGCGACGGAGTGGCGGAAGGTGCGGTTGCGCCGCGCCTCG
CCGGTCTGTGTGTGTGTGTTTGTACGGGGCGGGGCGGGGCGGGGGGGGGG
TGCTCATGTTGTAGGTGCTTGTGGGGGCTTAGTGTTGAGTTGTATATGCG
TTTGTATTTTGTGTGTGTGTTGTGTGTGTTGTGATTGTATCACTTGTATA
ATGGTCGTGGTTGTGGGTTGTATGGTGTATTGTATGCGTTTATGTTTCCA
TGTATTTCGTGTATGTGTGTGTGGTTCTCGTGTCACTTGCGACAGGTCGG
CCTATGCATTACACCACTACCGCCACCAACGAAGAAACAACGATAGCAAC
AGCAACATCAATAGCAACAGCAACAGCAACAGCCACAGCAGCAGCAACGG
CAACGGCAACAGCAGCAGCAACTGCAACGGCAAAATACGACAAAGACGAA
GACGATGAGCACGCACGCATCTGAACCGGGCACCGCTTCGCGTGTCACAC
CCCCCATCCTCCTATTAATAACAACAAACACACAAACCTCATACCTTACG
TTGAAACCTTACAACACAAACAGGTGGTCGAGAGTGGCAGCGACTACAAA
GGCCAGGCGGGCGAAGAGGATGGCGATGACCTCGGCAACAACACCACCAC
CACCACCACCACCGCCAACAACGCCAACAACGCGGGCGACAAGCCGATTC
CGAGTCGCCAAACCCCCAGACCACCTCATCTCCTACCCTCCTCCCCCGTA
AGGGCGGCGAAAACCGCCCCCGCCCCCTCCGTCGGGGTGGTGTTGGCGGG
AGTTACCCTAGACGGTACGAGCAGCCACACCCCTGTTGGTGTCTCGCACG
GCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1208:469..1421+

>mRNA_S-dermatodea_contig1208.1295.1 ID=mRNA_S-dermatodea_contig1208.1295.1|Name=mRNA_S-dermatodea_contig1208.1295.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at S-dermatodea_contig1208:469..1421+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGCTGCGAGCGGAGAGGGAGGTAACTTCAGAACTGCGGCGACTATC
CGGCCTCGGTGTGTACCCCGAAGCAGAACTAGCAAGGATACGGCGGGAGC
ACGGCAACTTGGCGACGGAGTGGCGGAAGCAGGTGCTGCGAGCGGAGAGG
GAGGTAACTTCAGAACTGCGGCGACTATCCGGCCTCGGTGTGTACCCCGA
AGCAGAACTAGCAAGGATACGGCGGGAGCACGGCAACTTGGCGACGGAGT
GGCGGAAGGTGGTCGAGAGTGGCAGCGACTACAAAGGCCAGGCGGGCGAA
GAGGATGGCGATGACCTCGGCAACAACACCACCACCACCACCACCACCGC
CAACAACGCCAACAACGCGGGCGACAAGCCGATTCCGAGTCGCCAAACCC
CCAGACCACCTCATCTCCTACCCTCCTCCCCCGTAAGGGCGGCGAAAACC
GCCCCCGCCCCCTCCGTCGGGGTGGTGTTGGCGGGAGTTACCCTAGACGG
TACGAGCAGCCACACCCCTGTTGGTGTCTCGCACGGCGTGGTCGAGAGTG
GCAGCGACTACAAAGGCCAGGCGGGCGAAGAGGATGGCGATGACCTCGGC
AACAACACCACCACCACCACCACCACCGCCAACAACGCCAACAACGCGGG
CGACAAGCCGATTCCGAGTCGCCAAACCCCCAGACCACCTCATCTCCTAC
CCTCCTCCCCCGTAAGGGCGGCGAAAACCGCCCCCGCCCCCTCCGTCGGG
GTGGTGTTGGCGGGAGTTACCCTAGACGGTACGAGCAGCCACACCCCTGT
TGGTGTCTCGCACGGC
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