mRNA_S-dermatodea_contig12078.1294.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12078.1294.1
Unique NamemRNA_S-dermatodea_contig12078.1294.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12078.1294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12078contigS-dermatodea_contig12078:4672..7299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1546
Cds size873
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12078.1294.1prot_S-dermatodea_contig12078.1294.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12078 4672..6132 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924229.9409823-CDS-S-dermatodea_contig12078:4671..49411622924229.9409823-CDS-S-dermatodea_contig12078:4671..4941Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12078 4672..4941 -
1694079110.2515144-CDS-S-dermatodea_contig12078:4671..49411694079110.2515144-CDS-S-dermatodea_contig12078:4671..4941Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12078 4672..4941 -
1622924229.9580514-CDS-S-dermatodea_contig12078:5529..61321622924229.9580514-CDS-S-dermatodea_contig12078:5529..6132Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12078 5530..6132 -
1694079110.2640405-CDS-S-dermatodea_contig12078:5529..61321694079110.2640405-CDS-S-dermatodea_contig12078:5529..6132Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12078 5530..6132 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924229.9675775-UTR-S-dermatodea_contig12078:6132..64501622924229.9675775-UTR-S-dermatodea_contig12078:6132..6450Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12078 6133..6450 -
1694079110.2721112-UTR-S-dermatodea_contig12078:6132..64501694079110.2721112-UTR-S-dermatodea_contig12078:6132..6450Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12078 6133..6450 -
1622924229.9781857-UTR-S-dermatodea_contig12078:6946..72991622924229.9781857-UTR-S-dermatodea_contig12078:6946..7299Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12078 6947..7299 -
1694079110.280115-UTR-S-dermatodea_contig12078:6946..72991694079110.280115-UTR-S-dermatodea_contig12078:6946..7299Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12078 6947..7299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12078.1294.1

>prot_S-dermatodea_contig12078.1294.1 ID=prot_S-dermatodea_contig12078.1294.1|Name=mRNA_S-dermatodea_contig12078.1294.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=291bp
MPDEYEVCGGGRKEVLQPQSERNDVNPSLLVENTHSRYIEQRTFLAENTP
KPTASVAKTQQVYQREEEGIKEEEPQLTVDDTRGNKNYILQSQGLEDDAP
ASALLEAAAVTLAERYDKPEQIEGDFDESGSVEGSVHSRWSLPGLGIGGV
HEQRAVWAEAGGEEDSVGSVEQAPSSEAGGRGSDSKSLRSRVESYDLQRE
LDGGYMAPCSPDRTSSLSGTAVPSSPTGGGISKVPADTGGTSSQEDTLGS
AAVAEETEVAADGEVEAATVSAPATVVCPAFAETPRQPGEG
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mRNA from alignment at S-dermatodea_contig12078:4672..7299-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12078.1294.1 ID=mRNA_S-dermatodea_contig12078.1294.1|Name=mRNA_S-dermatodea_contig12078.1294.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2628bp|location=Sequence derived from alignment at S-dermatodea_contig12078:4672..7299- (Saccorhiza dermatodea SderLu1190fm monoicous)
TGTCTCTCCAGACAAAGGTCTCATTAATACAACATCCTTTTCTCCAGAAG
CCATCGATTTATCAACACAGTCCTCCCGGTGCTGCGCCCCGACCTTAAAA
CTAAAGAGTTATACAGGAATGCACCCTGCCACCAATATGCACCTCTCCCC
TCGCTCTTCCGTCGTGCAACGCTCAACATTCAAGTCTTCCGGAGCAGAAG
CAGCAGCAGCAGCAACAGCAACAGCACACTGTGGCGACAGCTGCAGAGGG
ACAAGTATCGGGGTTGACCACACCTCTTCGTTCCGGGCTAAGTGGGTTCT
TCAAACGTCTGGCGTCGAACGGCTTATCGTCTACTTCTTCTAGCCAGGGG
GAGGTGAGAGCGTTAAAATGCGCCAACACTCCAAGCAGGAGACAAAGCAC
ACAGGGGAACTGTTCATCGTCGGTGACTCACACACGTTGCCTCGAAAACA
CGCGATGCGGAAGGTCACAGAGTTCGGAATCAATGCTTGTGCCCTCTAGC
GTGGAATAAGAAGTCATTGAATACCGTAGTGTGGACCATATAGCTTGACT
GTCGGAGACGCTTGTCGACATCATCTTAGCAAGTCGCCATGCAATTCTCA
AGGGGGGTACGGACATCGTCTGGAAAAATGTCGGGGTCGGTCTTTCTTAT
CGTCGAAAAGGCCTCCTCGTATACCCAGTCCGGAATAGAACCACTGCCAT
TCAGTGAATATCAATAAAATTACGACAGACAGTTGTAATAGTTGCACGGC
ACCGTCGATCTACAGCCAAACGAATTATTTCCCCATCGTGACTATCCGCT
TTTTGAAATGGGTGCTGCATAAACGTCCGCGCCTACTCATCTCCACCAGG
GTGACATCAAGGATAACAACAAGGAGGATGCGGCGGGCGGCACGATACAC
CAGGCATCCTCTAAACTGGAGCCGGAGGAAGCGCTTCGAACAGAGCACTC
GGTTGAAGCGGCAGAGCTTCCGCCAGAGACATCCTCCGCCTCAGGAGACG
AGTTCCAGGACAGTAAAATAACTTTGAGCATCGCAACAGGCAGCGAACAG
GCCGTTGCGGACTGCGGACACTCGGGAGAAAAAGCCACGGACGCGAATGC
CAGAGGTGCGCGTCCACACCACACCGGCGATATTCGCGACAAAGGCGTCA
TCGGTGCTGTCGAGCGCATGCCCGACGAGTATGAAGTGTGCGGCGGTGGT
CGAAAAGAGGTCTTGCAACCACAATCAGAACGTAACGACGTAAATCCGTC
GTTGCTCGTCGAGAATACCCACAGCCGTTACATCGAGCAACGCACGTTTC
TCGCCGAAAACACCCCGAAACCGACTGCCTCGGTGGCGAAAACCCAGCAA
GTATACCAGCGTGAAGAAGAGGGAATAAAAGAAGAAGAGCCACAACTAAC
TGTCGACGACACTAGAGGAAATAAAAATTACATCTTGCAATCGCAAGGGT
TAGAAGACGACGCTCCGGCGAGTGCACTCCTCGAAGCAGCGGCTGTTACG
CTGGCGGAACGGTACGATAAGCCCGAGCAGATCGAGGGAGACTTCGACGA
GTCCGGCAGCGTCGAAGGAAGCGTTCATAGCAGGTGGAGCCTCCCCGGCC
TCGGCATCGGTGGCGTGCACGAGCAGCGGGCGGTGTGGGCAGAAGCGGGT
GGTGAGGAGGACAGCGTGGGGAGCGTCGAGCAGGCGCCGAGCTCGGAGGC
AGGGGGCCGGGGCAGCGACAGCAAGTCTCTCAGGTCGCGTGTGGAGAGCT
ACGATCTACAACGAGAACTGGTGAGGAAGGATGAACGGTACAGAGGCGTC
TTGGCGTCCATCCGTACTTGTGGAAGGGGTGACGTTGACAAGATCTTGAG
TACGTCGGGAGTGGCTATTATAGTGGCGGCTCGCCTGGTCATCATTCCTC
AATTCCCCCCATCACCGACCCGCTGCGGAAAAGAGTGCATTCCCGACCCT
TGTGCACCTGTTATCCTCCGAGGCGTTGCTGAAGGAGAATAATGTAACTG
CGCAAACGTTTAAAATTAGATCGTTCAATGCTGAGCAAGGGCGCCGTTTC
GTTAACGCCTTTGTCGTTTGGCCATTGGATGTGAGGCATAGCGCTGCAAC
TTTTCCCGGCCATGTTTCTCGCGCCTGGTCAGCTTTGCCGTCTTCGTGTA
TCAGCGCATGCAGGCAAGGTTCACTGCCAGACAACCAGATGGATTAGGCT
CCGGCTGGAGTTTGGTGCAGGCTCTATGATATGCACCCTTGTAGCGGCAC
GTCGCACAGCAGTAGAACAAGCTTAACTTCAACAGCACGGCACCACTAGC
CGTAAGACCTCGCCAACTGATTCGCAGAAAATTCGTGCGCCCACCCACCG
CCTGCTAGGATGGTGGCTACATGGCCCCGTGTTCCCCGGACAGAACGTCT
TCCTTGAGCGGTACGGCCGTGCCTTCCTCTCCAACCGGGGGCGGCATTTC
AAAGGTACCGGCCGACACTGGAGGTACAAGTTCACAAGAGGACACGTTAG
GTTCCGCTGCTGTCGCAGAGGAGACCGAGGTGGCCGCAGACGGCGAGGTT
GAAGCAGCTACAGTGTCAGCGCCCGCCACTGTGGTGTGCCCCGCGTTTGC
AGAGACGCCACGTCAGCCCGGTGAAGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12078:4672..7299-

>mRNA_S-dermatodea_contig12078.1294.1 ID=mRNA_S-dermatodea_contig12078.1294.1|Name=mRNA_S-dermatodea_contig12078.1294.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1746bp|location=Sequence derived from alignment at S-dermatodea_contig12078:4672..7299- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCCGACGAGTATGAAGTGTGCGGCGGTGGTCGAAAAGAGGTCTTGCA
ACCACAATCAGAACGTAACGACGTAAATCCGTCGTTGCTCGTCGAGAATA
CCCACAGCCGTTACATCGAGCAACGCACGTTTCTCGCCGAAAACACCCCG
AAACCGACTGCCTCGGTGGCGAAAACCCAGCAAGTATACCAGCGTGAAGA
AGAGGGAATAAAAGAAGAAGAGCCACAACTAACTGTCGACGACACTAGAG
GAAATAAAAATTACATCTTGCAATCGCAAGGGTTAGAAGACGACGCTCCG
GCGAGTGCACTCCTCGAAGCAGCGGCTGTTACGCTGGCGGAACGGTACGA
TAAGCCCGAGCAGATCGAGGGAGACTTCGACGAGTCCGGCAGCGTCGAAG
GAAGCGTTCATAGCAGGTGGAGCCTCCCCGGCCTCGGCATCGGTGGCGTG
CACGAGCAGCGGGCGGTGTGGGCAGAAGCGGGTGGTGAGGAGGACAGCGT
GGGGAGCGTCGAGCAGGCGCCGAGCTCGGAGGCAGGGGGCCGGGGCAGCG
ACAGCAAGTCTCTCAGGTCGCGTGTGGAGAGCTACGATCTACAACGAGAA
CTGATGCCCGACGAGTATGAAGTGTGCGGCGGTGGTCGAAAAGAGGTCTT
GCAACCACAATCAGAACGTAACGACGTAAATCCGTCGTTGCTCGTCGAGA
ATACCCACAGCCGTTACATCGAGCAACGCACGTTTCTCGCCGAAAACACC
CCGAAACCGACTGCCTCGGTGGCGAAAACCCAGCAAGTATACCAGCGTGA
AGAAGAGGGAATAAAAGAAGAAGAGCCACAACTAACTGTCGACGACACTA
GAGGAAATAAAAATTACATCTTGCAATCGCAAGGGTTAGAAGACGACGCT
CCGGCGAGTGCACTCCTCGAAGCAGCGGCTGTTACGCTGGCGGAACGGTA
CGATAAGCCCGAGCAGATCGAGGGAGACTTCGACGAGTCCGGCAGCGTCG
AAGGAAGCGTTCATAGCAGGTGGAGCCTCCCCGGCCTCGGCATCGGTGGC
GTGCACGAGCAGCGGGCGGTGTGGGCAGAAGCGGGTGGTGAGGAGGACAG
CGTGGGGAGCGTCGAGCAGGCGCCGAGCTCGGAGGCAGGGGGCCGGGGCA
GCGACAGCAAGTCTCTCAGGTCGCGTGTGGAGAGCTACGATCTACAACGA
GAACTGGATGGTGGCTACATGGCCCCGTGTTCCCCGGACAGAACGTCTTC
CTTGAGCGGTACGGCCGTGCCTTCCTCTCCAACCGGGGGCGGCATTTCAA
AGGTACCGGCCGACACTGGAGGTACAAGTTCACAAGAGGACACGTTAGGT
TCCGCTGCTGTCGCAGAGGAGACCGAGGTGGCCGCAGACGGCGAGGTTGA
AGCAGCTACAGTGTCAGCGCCCGCCACTGTGGTGTGCCCCGCGTTTGCAG
AGACGCCACGTCAGCCCGGTGAAGGCGATGGTGGCTACATGGCCCCGTGT
TCCCCGGACAGAACGTCTTCCTTGAGCGGTACGGCCGTGCCTTCCTCTCC
AACCGGGGGCGGCATTTCAAAGGTACCGGCCGACACTGGAGGTACAAGTT
CACAAGAGGACACGTTAGGTTCCGCTGCTGTCGCAGAGGAGACCGAGGTG
GCCGCAGACGGCGAGGTTGAAGCAGCTACAGTGTCAGCGCCCGCCACTGT
GGTGTGCCCCGCGTTTGCAGAGACGCCACGTCAGCCCGGTGAAGGC
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