mRNA_S-dermatodea_contig12047.1272.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12047.1272.1
Unique NamemRNA_S-dermatodea_contig12047.1272.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12047.1272.1 vs. uniprot
Match: D8LMR1_ECTSI (Ubiquinone biosynthesis O-methyltransferase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR1_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 8.910e-40
Identity = 65/79 (82.28%), Postives = 69/79 (87.34%), Query Frame = 1 
Query:    1 QSFALAIVGAEYLAGIVPVGTHDWHKFVAPADLAAILQERGFPPEDVHTCGLMYNPLSGRWSENPDDVDVNYIVTALRG 237
            +SFALAIVGAEYLAGIVPVGTHDW KFV P DLAA+LQ  GFP E V TCGLMYNP+SGRW ENP D+DVNYIVTALRG
Sbjct:  240 KSFALAIVGAEYLAGIVPVGTHDWRKFVPPEDLAAMLQAHGFPGELVETCGLMYNPVSGRWKENPGDLDVNYIVTALRG 318
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BLAST of mRNA_S-dermatodea_contig12047.1272.1 vs. uniprot
Match: UPI0019E5972D (Bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019E5972D)

HSP 1 Score: 89.4 bits (220), Expect = 6.870e-20
Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:    1 QSFALAIVGAEYLAGIVPVGTHDWHKFVAPADLAAILQERGFPPEDVHTCGLMYNPLSGRWSENPDDVDVNYIVTALRGE 240
            +++ LAIVGAEY+ G +P GTHDW+KFV P++LAA L+  G    ++   G+ YNP++ +WS  P D+DVNY+  A R E
Sbjct:  176 KAYGLAIVGAEYIMGWLPRGTHDWNKFVRPSELAAPLRRAGLELTEI--TGVAYNPMADKWSLAPKDLDVNYMAVAARNE 253
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BLAST of mRNA_S-dermatodea_contig12047.1272.1 vs. uniprot
Match: A0A4R6A7K2_9RHOB (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Palleronia sediminis TaxID=2547833 RepID=A0A4R6A7K2_9RHOB)

HSP 1 Score: 89.0 bits (219), Expect = 8.370e-20
Identity = 39/78 (50.00%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:    1 QSFALAIVGAEYLAGIVPVGTHDWHKFVAPADLAAILQERGFPPEDVHTCGLMYNPLSGRWSENPDDVDVNYIVTALR 234
            +SFAL IVGAEY+   +P GTHDW++F+ P +L A+L+E G  P D    G+++NP+S RWS +  D+ VNY+ T+LR
Sbjct:  168 KSFALGIVGAEYVMRWLPRGTHDWNRFITPDELCAMLREAGLDPVD--RTGMVFNPVSWRWSLSERDLSVNYVTTSLR 243
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BLAST of mRNA_S-dermatodea_contig12047.1272.1 vs. uniprot
Match: UPI001A05F567 (Bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI001A05F567)

HSP 1 Score: 88.6 bits (218), Expect = 1.350e-19
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:    1 QSFALAIVGAEYLAGIVPVGTHDWHKFVAPADLAAILQERGFPPEDVHTCGLMYNPLSGRWSENPDDVDVNYIVTALR 234
            ++F LAIVGAEY+ G +P GTHDW+KFV P++LAA L+  G   E     G+ YNPL  +WS  P D+DVNY+  A R
Sbjct:  176 KAFGLAIVGAEYILGWLPRGTHDWNKFVRPSELAAPLRRAGL--EMTELAGVAYNPLKDKWSLAPRDLDVNYMAVAER 251
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BLAST of mRNA_S-dermatodea_contig12047.1272.1 vs. uniprot
Match: A0A5C8PR75_9HYPH (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Vineibacter terrae TaxID=2586908 RepID=A0A5C8PR75_9HYPH)

HSP 1 Score: 87.8 bits (216), Expect = 2.360e-19
Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:    1 QSFALAIVGAEYLAGIVPVGTHDWHKFVAPADLAAILQERGFPPEDVHTCGLMYNPLSGRWSENPDDVDVNYIVTALR 234
            ++FAL IVGAEY+ G +P GTHDW KF+ P+ LA  L+  G   E +   GL Y+P++GRW  +PDD+DVNY++ A +
Sbjct:  169 KAFALGIVGAEYVLGWLPRGTHDWRKFLKPSMLARPLRAAGLTVEAL--AGLAYSPITGRWRIDPDDLDVNYLMVATK 244
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BLAST of mRNA_S-dermatodea_contig12047.1272.1 vs. uniprot
Match: A0A562NUK6_9RHOB (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Paracoccus sulfuroxidans TaxID=384678 RepID=A0A562NUK6_9RHOB)

HSP 1 Score: 87.8 bits (216), Expect = 2.540e-19
Identity = 37/78 (47.44%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:    1 QSFALAIVGAEYLAGIVPVGTHDWHKFVAPADLAAILQERGFPPEDVHTCGLMYNPLSGRWSENPDDVDVNYIVTALR 234
            +SFA AIVGAE++   +P GTHDW +F+ PA+L+ ++   G  P D  +CG+++NPL   WS +  D+ VNY++TALR
Sbjct:  173 RSFAAAIVGAEWIMRWLPKGTHDWQRFITPAELSQMISATGLQPVD--SCGMVFNPLGWSWSLSHRDLSVNYLITALR 248
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BLAST of mRNA_S-dermatodea_contig12047.1272.1 vs. uniprot
Match: A0A5C5T6N0_9HYPH (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Reyranella sp. CPCC 100927 TaxID=2599616 RepID=A0A5C5T6N0_9HYPH)

HSP 1 Score: 87.0 bits (214), Expect = 4.660e-19
Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:    1 QSFALAIVGAEYLAGIVPVGTHDWHKFVAPADLAAILQERGFPPEDVHTCGLMYNPLSGRWSENPDDVDVNYIVTALR 234
            ++FAL IVGAEY+ G +P GTHDW KFV P++ A  L+  G   E +   GL+Y+P++GRW  +P D+DVNY++ A +
Sbjct:  169 KAFALGIVGAEYVLGWLPRGTHDWRKFVKPSEAARPLRTAGLSVETL--AGLVYSPVTGRWRVHPRDLDVNYLMVATK 244
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BLAST of mRNA_S-dermatodea_contig12047.1272.1 vs. uniprot
Match: A0A3D2GRP5_9PROT (3-demethylubiquinone-9 3-O-methyltransferase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D2GRP5_9PROT)

HSP 1 Score: 84.7 bits (208), Expect = 4.790e-19
Identity = 37/78 (47.44%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:    1 QSFALAIVGAEYLAGIVPVGTHDWHKFVAPADLAAILQERGFPPEDVHTCGLMYNPLSGRWSENPDDVDVNYIVTALR 234
            + FAL I+ AEYL   +P GTHDW KF+ P+++   L+ RGF   ++   GL+++P+  R+SENP D+DVNYI+TA++
Sbjct:   74 KGFALGIIAAEYLLRWLPRGTHDWRKFMRPSEVVGQLRHRGFALREL--TGLVFDPVRRRFSENPRDLDVNYILTAVK 149
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BLAST of mRNA_S-dermatodea_contig12047.1272.1 vs. uniprot
Match: UBIG_METS4 (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Methylobacterium sp. (strain 4-46) TaxID=426117 RepID=UBIG_METS4)

HSP 1 Score: 86.7 bits (213), Expect = 6.900e-19
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:    1 QSFALAIVGAEYLAGIVPVGTHDWHKFVAPADLAAILQERGFPPEDVHTCGLMYNPLSGRWSENPDDVDVNYIVTALR 234
            +SFALAIVGAEY+ G +P GTHDW KFV P +LA  ++  G    D  T G++Y+PLSGRWS   D   VNY++TA R
Sbjct:  172 RSFALAIVGAEYVLGWLPRGTHDWEKFVTPEELARAVESGGLVVAD--TTGVVYHPLSGRWSAARDTA-VNYMITAER 246
[Close]
BLAST of mRNA_S-dermatodea_contig12047.1272.1 vs. uniprot
Match: A0A5B8J2U6_9RHOB (Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Qingshengfaniella alkalisoli TaxID=2599296 RepID=A0A5B8J2U6_9RHOB)

HSP 1 Score: 86.7 bits (213), Expect = 6.900e-19
Identity = 35/78 (44.87%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:    1 QSFALAIVGAEYLAGIVPVGTHDWHKFVAPADLAAILQERGFPPEDVHTCGLMYNPLSGRWSENPDDVDVNYIVTALR 234
            +SFAL I+GAE++   +P GTHDWHKF+ P +L  ++++ G  P D    G+++NP++ RWS + +D+ VNY+ T+LR
Sbjct:  172 KSFALGIIGAEWVMRWLPKGTHDWHKFITPDELFGMIEKTGLDPVDRK--GMVFNPITWRWSLSSNDLSVNYVTTSLR 247
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12047.1272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMR1_ECTSI8.910e-4082.28Ubiquinone biosynthesis O-methyltransferase, mitoc... [more]
UPI0019E5972D6.870e-2048.75Bifunctional 2-polyprenyl-6-hydroxyphenol methylas... [more]
A0A4R6A7K2_9RHOB8.370e-2050.00Ubiquinone biosynthesis O-methyltransferase n=1 Ta... [more]
UPI001A05F5671.350e-1952.56Bifunctional 2-polyprenyl-6-hydroxyphenol methylas... [more]
A0A5C8PR75_9HYPH2.360e-1950.00Ubiquinone biosynthesis O-methyltransferase n=1 Ta... [more]
A0A562NUK6_9RHOB2.540e-1947.44Ubiquinone biosynthesis O-methyltransferase n=1 Ta... [more]
A0A5C5T6N0_9HYPH4.660e-1948.72Ubiquinone biosynthesis O-methyltransferase n=1 Ta... [more]
A0A3D2GRP5_9PROT4.790e-1947.443-demethylubiquinone-9 3-O-methyltransferase n=1 T... [more]
UBIG_METS46.900e-1955.13Ubiquinone biosynthesis O-methyltransferase n=1 Ta... [more]
A0A5B8J2U6_9RHOB6.900e-1944.87Ubiquinone biosynthesis O-methyltransferase n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12047contigS-dermatodea_contig12047:125..376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.6
Seed ortholog evalue3.4e-31
Seed eggNOG ortholog2880.D8LMR1
Preferred nameCOQ3
KEGG rclassRC00003,RC00392,RC01895
KEGG koko:K00568,ko:K00591
KEGG ReactionR02175,R04711,R04988,R05614,R07235,R08769,R08771,R08781
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00117,M00128
GOsGO:0003674,GO:0003824,GO:0004395,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008757,GO:0009058,GO:0009108,GO:0009987,GO:0010420,GO:0016020,GO:0016740,GO:0016741,GO:0019866,GO:0019898,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032259,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0051186,GO:0051188,GO:0061542,GO:0061543,GO:0071704,GO:1901576,GO:1901661,GO:1901663
EggNOG free text desc.hexaprenyldihydroxybenzoate methyltransferase activity
EggNOG OGsCOG2227@1,KOG1270@2759
EC2.1.1.114,2.1.1.222,2.1.1.64
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquinone biosynthesis O-methyltransferase
Ec32 orthologEc-02_003340.1
Exons1
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924228.6059058-CDS-S-dermatodea_contig12047:124..3761622924228.6059058-CDS-S-dermatodea_contig12047:124..376Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12047 125..376 +
1694079109.4368513-CDS-S-dermatodea_contig12047:124..3761694079109.4368513-CDS-S-dermatodea_contig12047:124..376Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12047 125..376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12047.1272.1prot_S-dermatodea_contig12047.1272.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12047 125..376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12047.1272.1

>prot_S-dermatodea_contig12047.1272.1 ID=prot_S-dermatodea_contig12047.1272.1|Name=mRNA_S-dermatodea_contig12047.1272.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=84bp
QSFALAIVGAEYLAGIVPVGTHDWHKFVAPADLAAILQERGFPPEDVHTC
GLMYNPLSGRWSENPDDVDVNYIVTALRGEESM*
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mRNA from alignment at S-dermatodea_contig12047:125..376+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12047.1272.1 ID=mRNA_S-dermatodea_contig12047.1272.1|Name=mRNA_S-dermatodea_contig12047.1272.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=252bp|location=Sequence derived from alignment at S-dermatodea_contig12047:125..376+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGTCCTTCGCGCTCGCTATCGTTGGCGCAGAATACCTGGCAGGCATCGT
GCCAGTGGGGACGCATGACTGGCACAAGTTTGTGGCTCCAGCGGACCTTG
CCGCGATATTGCAAGAGCGAGGGTTTCCTCCAGAAGACGTGCACACATGC
GGGTTGATGTACAACCCGTTGTCGGGGAGATGGAGCGAGAACCCGGACGA
TGTGGACGTGAATTACATCGTTACCGCATTGCGCGGCGAGGAATCGATGT
AG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12047:125..376+

>mRNA_S-dermatodea_contig12047.1272.1 ID=mRNA_S-dermatodea_contig12047.1272.1|Name=mRNA_S-dermatodea_contig12047.1272.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at S-dermatodea_contig12047:125..376+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGTCCTTCGCGCTCGCTATCGTTGGCGCAGAATACCTGGCAGGCATCGT
GCCAGTGGGGACGCATGACTGGCACAAGTTTGTGGCTCCAGCGGACCTTG
CCGCGATATTGCAAGAGCGAGGGTTTCCTCCAGAAGACGTGCACACATGC
GGGTTGATGTACAACCCGTTGTCGGGGAGATGGAGCGAGAACCCGGACGA
TGTGGACGTGAATTACATCGTTACCGCATTGCGCGGCGAGGAATCGATGT
AGCAGTCCTTCGCGCTCGCTATCGTTGGCGCAGAATACCTGGCAGGCATC
GTGCCAGTGGGGACGCATGACTGGCACAAGTTTGTGGCTCCAGCGGACCT
TGCCGCGATATTGCAAGAGCGAGGGTTTCCTCCAGAAGACGTGCACACAT
GCGGGTTGATGTACAACCCGTTGTCGGGGAGATGGAGCGAGAACCCGGAC
GATGTGGACGTGAATTACATCGTTACCGCATTGCGCGGCGAGGAATCGAT
GTAG
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