mRNA_S-dermatodea_contig12045.1270.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12045.1270.1
Unique NamemRNA_S-dermatodea_contig12045.1270.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12045.1270.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 4.240e-17
Identity = 29/40 (72.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:   76 KICYRCDGCDDFPLRHVRHHCQVCEDFDLCPQCYEVFHGP 195
            ++CYRCDGCDD PL+HVRHHC VC DFDLCP+C++ +HGP
Sbjct: 4150 QVCYRCDGCDDCPLQHVRHHCLVCADFDLCPRCHDRYHGP 4189
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BLAST of mRNA_S-dermatodea_contig12045.1270.1 vs. uniprot
Match: D8LLX0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX0_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 4.560e-15
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   76 KICYRCDGCDDFPLRHVRHHCQVCEDFDLCPQCYEVFHGP 195
            ++CYRCD CDD PL+HVR+HC VC DFDLC +CY+ +HGP
Sbjct: 3966 QVCYRCDSCDDCPLQHVRYHCLVCADFDLCARCYDRYHGP 4005
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BLAST of mRNA_S-dermatodea_contig12045.1270.1 vs. uniprot
Match: A0A2R5H060_9STRA (Pentatricopeptide repeat-containing protein At5g13770, chloroplastic n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5H060_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.080e-9
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:   55 VPAGVPSKICYRCDGCDDFPLRHVRHHCQVCEDFDLCPQCYEVFHGP 195
            +P+G+  ++ Y CD C   PLR +R+HC VC+DFDLC +C+E  + P
Sbjct:  154 LPSGMEDQLVYGCDSCGKQPLRDMRYHCHVCQDFDLCKECFETRNPP 200
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BLAST of mRNA_S-dermatodea_contig12045.1270.1 vs. uniprot
Match: A0A5J9TI83_9POAL (Uncharacterized protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9TI83_9POAL)

HSP 1 Score: 53.9 bits (128), Expect = 8.670e-7
Identity = 19/37 (51.35%), Postives = 23/37 (62.16%), Query Frame = 1 
Query:   73 SKICYRCDGCDDFPLRHVRHHCQVCEDFDLCPQCYEV 183
            S + Y CDGC   P+   R HC +C DFDLC  CYE+
Sbjct: 2504 SSVQYCCDGCSTVPILRQRWHCNICPDFDLCENCYEI 2540
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BLAST of mRNA_S-dermatodea_contig12045.1270.1 vs. uniprot
Match: A0A6G0X2J5_9STRA (ZZ-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X2J5_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 2.630e-5
Identity = 17/36 (47.22%), Postives = 23/36 (63.89%), Query Frame = 1 
Query:   85 YRCDGCDDFPLRHVRHHCQVCEDFDLCPQCYEVFHG 192
            Y CD C  F  + +R+ C VC+DFD+C  CY+  HG
Sbjct:  404 YYCDICGAFDFQGIRYQCTVCDDFDMCENCYDSSHG 439
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BLAST of mRNA_S-dermatodea_contig12045.1270.1 vs. uniprot
Match: UPI0006448367 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006448367)

HSP 1 Score: 49.3 bits (116), Expect = 3.730e-5
Identity = 17/36 (47.22%), Postives = 23/36 (63.89%), Query Frame = 1 
Query:   76 KICYRCDGCDDFPLRHVRHHCQVCEDFDLCPQCYEV 183
            +I + CD C   P+ + R HC+ CEDFDLC  CY+ 
Sbjct: 2862 EIVFSCDRCSTKPILNKRWHCEACEDFDLCDNCYQT 2897
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BLAST of mRNA_S-dermatodea_contig12045.1270.1 vs. uniprot
Match: A0A7R9TZB3_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TZB3_9VIRI)

HSP 1 Score: 48.1 bits (113), Expect = 9.540e-5
Identity = 16/31 (51.61%), Postives = 21/31 (67.74%), Query Frame = 1 
Query:   85 YRCDGCDDFPLRHVRHHCQVCEDFDLCPQCY 177
            + CD C D P+   R HC +C+D+DLC QCY
Sbjct:  912 FACDVCGDIPIIGTRWHCLICQDYDLCEQCY 942
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BLAST of mRNA_S-dermatodea_contig12045.1270.1 vs. uniprot
Match: A0A7R9U0A1_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9U0A1_9VIRI)

HSP 1 Score: 48.1 bits (113), Expect = 9.550e-5
Identity = 16/31 (51.61%), Postives = 21/31 (67.74%), Query Frame = 1 
Query:   85 YRCDGCDDFPLRHVRHHCQVCEDFDLCPQCY 177
            + CD C D P+   R HC +C+D+DLC QCY
Sbjct: 2596 FACDVCGDIPIIGTRWHCLICQDYDLCEQCY 2626
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12045.1270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5J981_9PHAE4.240e-1772.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLX0_ECTSI4.560e-1567.50Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A2R5H060_9STRA3.080e-946.81Pentatricopeptide repeat-containing protein At5g13... [more]
A0A5J9TI83_9POAL8.670e-751.35Uncharacterized protein (Fragment) n=1 Tax=Eragros... [more]
A0A6G0X2J5_9STRA2.630e-547.22ZZ-type domain-containing protein n=1 Tax=Aphanomy... [more]
UPI00064483673.730e-547.22hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A7R9TZB3_9VIRI9.540e-551.61Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A7R9U0A1_9VIRI9.550e-551.61Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12045contigS-dermatodea_contig12045:5457..5651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue4.6e-12
Seed eggNOG ortholog2880.D8LLX0
KEGG koko:K10691
KEGG Pathwayko05165,ko05203,map05165,map05203
EggNOG free text desc.perineurial glial growth
EggNOG OGsKOG1776@1,KOG1776@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924228.5093296-CDS-S-dermatodea_contig12045:5456..56511622924228.5093296-CDS-S-dermatodea_contig12045:5456..5651Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12045 5457..5651 +
1694079109.3708758-CDS-S-dermatodea_contig12045:5456..56511694079109.3708758-CDS-S-dermatodea_contig12045:5456..5651Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12045 5457..5651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12045.1270.1prot_S-dermatodea_contig12045.1270.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12045 5457..5651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12045.1270.1

>prot_S-dermatodea_contig12045.1270.1 ID=prot_S-dermatodea_contig12045.1270.1|Name=mRNA_S-dermatodea_contig12045.1270.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=65bp
ASGDDVPAPGAASAAAAAVPAGVPSKICYRCDGCDDFPLRHVRHHCQVCE
DFDLCPQCYEVFHGP
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mRNA from alignment at S-dermatodea_contig12045:5457..5651+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12045.1270.1 ID=mRNA_S-dermatodea_contig12045.1270.1|Name=mRNA_S-dermatodea_contig12045.1270.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at S-dermatodea_contig12045:5457..5651+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAAGTGGAGACGACGTGCCCGCTCCCGGTGCTGCTTCCGCTGCGGCCGC
GGCCGTGCCGGCGGGGGTCCCGAGCAAGATATGTTACCGTTGCGACGGTT
GCGACGACTTCCCGCTGCGGCACGTTCGGCACCACTGCCAGGTCTGCGAG
GACTTCGACCTGTGCCCGCAGTGCTACGAGGTTTTCCACGGCCCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12045:5457..5651+

>mRNA_S-dermatodea_contig12045.1270.1 ID=mRNA_S-dermatodea_contig12045.1270.1|Name=mRNA_S-dermatodea_contig12045.1270.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at S-dermatodea_contig12045:5457..5651+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAAGTGGAGACGACGTGCCCGCTCCCGGTGCTGCTTCCGCTGCGGCCGC
GGCCGTGCCGGCGGGGGTCCCGAGCAAGATATGTTACCGTTGCGACGGTT
GCGACGACTTCCCGCTGCGGCACGTTCGGCACCACTGCCAGGTCTGCGAG
GACTTCGACCTGTGCCCGCAGTGCTACGAGGTTTTCCACGGCCCGGCAAG
TGGAGACGACGTGCCCGCTCCCGGTGCTGCTTCCGCTGCGGCCGCGGCCG
TGCCGGCGGGGGTCCCGAGCAAGATATGTTACCGTTGCGACGGTTGCGAC
GACTTCCCGCTGCGGCACGTTCGGCACCACTGCCAGGTCTGCGAGGACTT
CGACCTGTGCCCGCAGTGCTACGAGGTTTTCCACGGCCCG
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