mRNA_S-dermatodea_contig1203.1260.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1203.1260.1
Unique NamemRNA_S-dermatodea_contig1203.1260.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1203.1260.1 vs. uniprot
Match: D7FSL8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL8_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 4.900e-6
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   19 DFCSEHKRAGMVDVRFKRCAYEGCSKFPSFGTEGSR 126
            +FCS+H + GM++VR KRC + GC+K PSFGT GS+
Sbjct:    4 EFCSQHAKPGMINVRKKRCCHPGCTKKPSFGTAGSK 39
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1203.1260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSL8_ECTSI4.900e-658.33EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1203contigS-dermatodea_contig1203:4168..5457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size998
Cds size996
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924227.7724464-CDS-S-dermatodea_contig1203:4167..50231622924227.7724464-CDS-S-dermatodea_contig1203:4167..5023Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1203 4168..5023 +
1694079108.8240747-CDS-S-dermatodea_contig1203:4167..50231694079108.8240747-CDS-S-dermatodea_contig1203:4167..5023Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1203 4168..5023 +
1622924227.7821577-CDS-S-dermatodea_contig1203:5317..54571622924227.7821577-CDS-S-dermatodea_contig1203:5317..5457Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1203 5318..5457 +
1694079108.8321574-CDS-S-dermatodea_contig1203:5317..54571694079108.8321574-CDS-S-dermatodea_contig1203:5317..5457Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1203 5318..5457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1203.1260.1prot_S-dermatodea_contig1203.1260.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1203 4168..5457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1203.1260.1

>prot_S-dermatodea_contig1203.1260.1 ID=prot_S-dermatodea_contig1203.1260.1|Name=mRNA_S-dermatodea_contig1203.1260.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=332bp
TEGRKADFCSEHKRAGMVDVRFKRCAYEGCSKFPSFGTEGSRKTEFCSEH
KRAGMVDVRNDICASHGCSKRPSYGTVGTTKAEFCGEHKRAGMVNVMSKR
CACHGCSKFPSFGPEGSRETKFCSKHKRAGMVDVRSKRCAYHGCPKQPSY
GMEGSRKAEFCSEHKRAGMVNVKSKRCAYHGCLKIPSFGTEGSKDTKFCS
EHKRAGMVDVRSKLCAYDGCRKRPSNGRAGTPKAEFCSEHKRAGVVDGSQ
KRCASEGCVKYPVYGPDGSRRQRLLRSRHFTEGHQGGASAIEAAKAREEA
TEVGEEAGGQAALPSTRKRPLRVERFPRQVQK
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mRNA from alignment at S-dermatodea_contig1203:4168..5457+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1203.1260.1 ID=mRNA_S-dermatodea_contig1203.1260.1|Name=mRNA_S-dermatodea_contig1203.1260.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1290bp|location=Sequence derived from alignment at S-dermatodea_contig1203:4168..5457+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGGAGGGCAGGAAGGCGGACTTCTGCAGCGAACACAAGAGGGCGGGTAT
GGTGGACGTCCGCTTCAAACGGTGTGCCTACGAAGGATGCTCCAAGTTCC
CATCGTTTGGCACGGAGGGCAGCAGGAAGACGGAGTTCTGCAGCGAACAC
AAGAGGGCGGGTATGGTGGACGTCCGTAACGATATTTGTGCCTCCCATGG
ATGTTCCAAGCGGCCTTCCTATGGTACGGTGGGCACCACGAAGGCGGAGT
TCTGCGGCGAACACAAGAGGGCGGGCATGGTGAACGTCATGAGCAAACGG
TGTGCCTGCCATGGATGTTCCAAATTCCCATCGTTCGGCCCAGAGGGCAG
CAGGGAGACGAAGTTCTGCAGCAAACACAAGAGGGCGGGAATGGTGGACG
TCAGGAGCAAACGGTGTGCCTACCATGGATGTCCCAAGCAGCCATCGTAT
GGTATGGAGGGCAGCAGGAAGGCGGAGTTTTGCAGCGAACACAAGAGGGC
GGGTATGGTGAACGTCAAGAGCAAACGGTGTGCCTACCATGGATGTTTGA
AGATCCCATCGTTCGGCACAGAGGGCAGCAAGGATACGAAGTTCTGCAGC
GAACACAAGAGGGCGGGTATGGTGGACGTCCGTAGCAAACTGTGCGCCTA
TGATGGATGTCGCAAGCGGCCATCGAATGGTAGGGCGGGCACTCCAAAGG
CGGAGTTCTGCAGCGAACACAAGAGGGCCGGTGTGGTTGATGGTTCGCAG
AAAAGGTGTGCCAGCGAGGGTTGCGTCAAGTACCCAGTGTACGGTCCGGA
TGGCAGCAGACGACAAAGGTTGCTTCGCTCTCGACACTTCACGGAGGGCC
ATCAAGGTCAGCACGTTGATGTACACACTTCATCTACATATGTCTTCCAG
TACTGTAATACGATGGTGTGCGAGTGCACGTCAAACACCGGCCGTGTGAG
TTCGGTTTGCCGTCGTGCGATCTCTGTTGCATCGTTGCCGGAAACGCTCA
CGAACCGCGCATGGCCGCTGACTGTTTGTGTGCCACCAAGTTCATGTTTT
CGTATAGCCTCGCCGTGATCTTCACCTGTTGACAGTTGACAGCTTCCTGT
CTTGAGACGAATCTACTCGTTTATTCCACGATCGCGACTTTGCTGTGTAG
GTGGAGCATCAGCTATTGAGGCAGCAAAGGCAAGGGAGGAGGCCACGGAG
GTGGGAGAGGAAGCTGGTGGGCAGGCTGCTCTCCCGAGTACAAGGAAGCG
GCCACTGAGGGTTGAGCGCTTCCCACGGCAAGTGCAGAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1203:4168..5457+

>mRNA_S-dermatodea_contig1203.1260.1 ID=mRNA_S-dermatodea_contig1203.1260.1|Name=mRNA_S-dermatodea_contig1203.1260.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1992bp|location=Sequence derived from alignment at S-dermatodea_contig1203:4168..5457+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGGAGGGCAGGAAGGCGGACTTCTGCAGCGAACACAAGAGGGCGGGTAT
GGTGGACGTCCGCTTCAAACGGTGTGCCTACGAAGGATGCTCCAAGTTCC
CATCGTTTGGCACGGAGGGCAGCAGGAAGACGGAGTTCTGCAGCGAACAC
AAGAGGGCGGGTATGGTGGACGTCCGTAACGATATTTGTGCCTCCCATGG
ATGTTCCAAGCGGCCTTCCTATGGTACGGTGGGCACCACGAAGGCGGAGT
TCTGCGGCGAACACAAGAGGGCGGGCATGGTGAACGTCATGAGCAAACGG
TGTGCCTGCCATGGATGTTCCAAATTCCCATCGTTCGGCCCAGAGGGCAG
CAGGGAGACGAAGTTCTGCAGCAAACACAAGAGGGCGGGAATGGTGGACG
TCAGGAGCAAACGGTGTGCCTACCATGGATGTCCCAAGCAGCCATCGTAT
GGTATGGAGGGCAGCAGGAAGGCGGAGTTTTGCAGCGAACACAAGAGGGC
GGGTATGGTGAACGTCAAGAGCAAACGGTGTGCCTACCATGGATGTTTGA
AGATCCCATCGTTCGGCACAGAGGGCAGCAAGGATACGAAGTTCTGCAGC
GAACACAAGAGGGCGGGTATGGTGGACGTCCGTAGCAAACTGTGCGCCTA
TGATGGATGTCGCAAGCGGCCATCGAATGGTAGGGCGGGCACTCCAAAGG
CGGAGTTCTGCAGCGAACACAAGAGGGCCGGTGTGGTTGATGGTTCGCAG
AAAAGGTGTGCCAGCGAGGGTTGCGTCAAGTACCCAGTGTACGGTCCGGA
TGGCAGCAGACGACAAAGGTTGCTTCGCTCTCGACACTTCACGGAGGGCC
ATCAAGACGGAGGGCAGGAAGGCGGACTTCTGCAGCGAACACAAGAGGGC
GGGTATGGTGGACGTCCGCTTCAAACGGTGTGCCTACGAAGGATGCTCCA
AGTTCCCATCGTTTGGCACGGAGGGCAGCAGGAAGACGGAGTTCTGCAGC
GAACACAAGAGGGCGGGTATGGTGGACGTCCGTAACGATATTTGTGCCTC
CCATGGATGTTCCAAGCGGCCTTCCTATGGTACGGTGGGCACCACGAAGG
CGGAGTTCTGCGGCGAACACAAGAGGGCGGGCATGGTGAACGTCATGAGC
AAACGGTGTGCCTGCCATGGATGTTCCAAATTCCCATCGTTCGGCCCAGA
GGGCAGCAGGGAGACGAAGTTCTGCAGCAAACACAAGAGGGCGGGAATGG
TGGACGTCAGGAGCAAACGGTGTGCCTACCATGGATGTCCCAAGCAGCCA
TCGTATGGTATGGAGGGCAGCAGGAAGGCGGAGTTTTGCAGCGAACACAA
GAGGGCGGGTATGGTGAACGTCAAGAGCAAACGGTGTGCCTACCATGGAT
GTTTGAAGATCCCATCGTTCGGCACAGAGGGCAGCAAGGATACGAAGTTC
TGCAGCGAACACAAGAGGGCGGGTATGGTGGACGTCCGTAGCAAACTGTG
CGCCTATGATGGATGTCGCAAGCGGCCATCGAATGGTAGGGCGGGCACTC
CAAAGGCGGAGTTCTGCAGCGAACACAAGAGGGCCGGTGTGGTTGATGGT
TCGCAGAAAAGGTGTGCCAGCGAGGGTTGCGTCAAGTACCCAGTGTACGG
TCCGGATGGCAGCAGACGACAAAGGTTGCTTCGCTCTCGACACTTCACGG
AGGGCCATCAAGGTGGAGCATCAGCTATTGAGGCAGCAAAGGCAAGGGAG
GAGGCCACGGAGGTGGGAGAGGAAGCTGGTGGGCAGGCTGCTCTCCCGAG
TACAAGGAAGCGGCCACTGAGGGTTGAGCGCTTCCCACGGCAAGTGCAGA
AGGTGGAGCATCAGCTATTGAGGCAGCAAAGGCAAGGGAGGAGGCCACGG
AGGTGGGAGAGGAAGCTGGTGGGCAGGCTGCTCTCCCGAGTACAAGGAAG
CGGCCACTGAGGGTTGAGCGCTTCCCACGGCAAGTGCAGAAG
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