mRNA_S-dermatodea_contig11990.1238.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11990.1238.1
Unique NamemRNA_S-dermatodea_contig11990.1238.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11990.1238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11990contigS-dermatodea_contig11990:3719..4382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924225.9116647-CDS-S-dermatodea_contig11990:3719..38701622924225.9116647-CDS-S-dermatodea_contig11990:3719..3870Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11990 3720..3870 -
1694079107.4493346-CDS-S-dermatodea_contig11990:3719..38701694079107.4493346-CDS-S-dermatodea_contig11990:3719..3870Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11990 3720..3870 -
1622924225.9233482-CDS-S-dermatodea_contig11990:4215..43821622924225.9233482-CDS-S-dermatodea_contig11990:4215..4382Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11990 4216..4382 -
1694079107.4574661-CDS-S-dermatodea_contig11990:4215..43821694079107.4574661-CDS-S-dermatodea_contig11990:4215..4382Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11990 4216..4382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11990.1238.1prot_S-dermatodea_contig11990.1238.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11990 3720..4382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11990.1238.1

>prot_S-dermatodea_contig11990.1238.1 ID=prot_S-dermatodea_contig11990.1238.1|Name=mRNA_S-dermatodea_contig11990.1238.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=106bp
AHALLSEDSDFPVESSATKTSLGGLVTQRTQNTDEHELAGGDSHGIVHTG
AIPGARGLHVFETSDEKCIEGNAMVLDCGGHTAAGAATRSRAPPLPKVSS
DTAASG
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mRNA from alignment at S-dermatodea_contig11990:3719..4382-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11990.1238.1 ID=mRNA_S-dermatodea_contig11990.1238.1|Name=mRNA_S-dermatodea_contig11990.1238.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=664bp|location=Sequence derived from alignment at S-dermatodea_contig11990:3719..4382- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCACATGCTCTTCTTTCCGAAGACAGTGATTTTCCTGTGGAGTCCTCGGC
TACGAAGACATCATTGGGGGGCCTCGTGACACAGAGGACCCAAAACACAG
ACGAACATGAATTAGCCGGGGGTGACAGTCATGGCATCGTGCACACTGGG
GCCATCCCCGGCGCCCGGTGAGTAACTTTTATACTCTACGCTCTAGTTCT
TTGTGGAGTTTTAGTATCTACCGTTAGGGCGCGTGCGAAGTGGTTGTACC
TGGTCAGTATTTAACCGCTTGGAAATCAACTCGTGATTTCGCTGTTGTCT
GACGTGGCTTCGCGCGCATTGCATTCTTGTTTTGGGTACCACTATCACAT
TTTGTTTGTTACGCAATAGGCGCCACGAAGGTGCCGCTCCTCTCCTGTGG
TGTTCGTTTGTTTATACGTGAAACACCGACCGCCTTTCCTGAATACAATT
GAAGTTATTGATATTGAGGCGATTGCCACGTTTTTGCCGGTTTCTTGCCA
TGTCGTCTCCAGGGGGCTGCATGTTTTCGAAACGAGCGATGAGAAATGCA
TTGAAGGGAATGCCATGGTTCTTGACTGTGGTGGCCATACTGCGGCAGGC
GCTGCCACAAGATCCAGAGCTCCTCCCTTACCTAAGGTCTCAAGTGACAC
AGCAGCATCTGGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11990:3719..4382-

>mRNA_S-dermatodea_contig11990.1238.1 ID=mRNA_S-dermatodea_contig11990.1238.1|Name=mRNA_S-dermatodea_contig11990.1238.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at S-dermatodea_contig11990:3719..4382- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCACATGCTCTTCTTTCCGAAGACAGTGATTTTCCTGTGGAGTCCTCGGC
TACGAAGACATCATTGGGGGGCCTCGTGACACAGAGGACCCAAAACACAG
ACGAACATGAATTAGCCGGGGGTGACAGTCATGGCATCGTGCACACTGGG
GCCATCCCCGGCGCCCGGCACATGCTCTTCTTTCCGAAGACAGTGATTTT
CCTGTGGAGTCCTCGGCTACGAAGACATCATTGGGGGGCCTCGTGACACA
GAGGACCCAAAACACAGACGAACATGAATTAGCCGGGGGTGACAGTCATG
GCATCGTGCACACTGGGGCCATCCCCGGCGCCCGGGGGCTGCATGTTTTC
GAAACGAGCGATGAGAAATGCATTGAAGGGAATGCCATGGTTCTTGACTG
TGGTGGCCATACTGCGGCAGGCGCTGCCACAAGATCCAGAGCTCCTCCCT
TACCTAAGGTCTCAAGTGACACAGCAGCATCTGGGGGGGCTGCATGTTTT
CGAAACGAGCGATGAGAAATGCATTGAAGGGAATGCCATGGTTCTTGACT
GTGGTGGCCATACTGCGGCAGGCGCTGCCACAAGATCCAGAGCTCCTCCC
TTACCTAAGGTCTCAAGTGACACAGCAGCATCTGGG
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