mRNA_S-dermatodea_contig11913.1203.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11913.1203.1
Unique NamemRNA_S-dermatodea_contig11913.1203.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11913.1203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11913contigS-dermatodea_contig11913:4837..6165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size384
Cds size351
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11913.1203.1prot_S-dermatodea_contig11913.1203.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11913 4870..6165 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924223.3851464-UTR-S-dermatodea_contig11913:4836..48691622924223.3851464-UTR-S-dermatodea_contig11913:4836..4869Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11913 4837..4869 +
1694079105.715436-UTR-S-dermatodea_contig11913:4836..48691694079105.715436-UTR-S-dermatodea_contig11913:4836..4869Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11913 4837..4869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924223.393794-CDS-S-dermatodea_contig11913:4869..50581622924223.393794-CDS-S-dermatodea_contig11913:4869..5058Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11913 4870..5058 +
1694079105.725639-CDS-S-dermatodea_contig11913:4869..50581694079105.725639-CDS-S-dermatodea_contig11913:4869..5058Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11913 4870..5058 +
1622924223.4037833-CDS-S-dermatodea_contig11913:5352..54841622924223.4037833-CDS-S-dermatodea_contig11913:5352..5484Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11913 5353..5484 +
1694079105.7363224-CDS-S-dermatodea_contig11913:5352..54841694079105.7363224-CDS-S-dermatodea_contig11913:5352..5484Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11913 5353..5484 +
1622924223.4125988-CDS-S-dermatodea_contig11913:6135..61651622924223.4125988-CDS-S-dermatodea_contig11913:6135..6165Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11913 6136..6165 +
1694079105.7488222-CDS-S-dermatodea_contig11913:6135..61651694079105.7488222-CDS-S-dermatodea_contig11913:6135..6165Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11913 6136..6165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11913.1203.1

>prot_S-dermatodea_contig11913.1203.1 ID=prot_S-dermatodea_contig11913.1203.1|Name=mRNA_S-dermatodea_contig11913.1203.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=117bp
MLESQKECLAVICRVFDETMKDVRDRYKERCENKIVVPVEDVYLLKHKKK
LEELVASRQFRAQDQSKDDAFSHTEMAVRILKNQQIRGEEYEWPEPVDGK
VSMFPLEIAAEGTHRHR
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mRNA from alignment at S-dermatodea_contig11913:4837..6165+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11913.1203.1 ID=mRNA_S-dermatodea_contig11913.1203.1|Name=mRNA_S-dermatodea_contig11913.1203.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1329bp|location=Sequence derived from alignment at S-dermatodea_contig11913:4837..6165+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTCCGGATTAACTATCGTACTCGTCGTCTGCGATGCTTGAGTCCCAGAA
AGAATGCCTCGCCGTCATCTGCCGTGTGTTCGACGAGACGATGAAGGACG
TAAGAGACCGCTACAAGGAGCGTTGCGAGAATAAAATTGTTGTGCCTGTG
GAGGACGTCTACCTTCTGAAGCACAAGAAGAAGCTGGAGGAGCTGGTGGC
AAGCAGACAATTTCGGGCGCAGGTGAGCGGCCGGGGTTGCGGTTAGGGTC
TCCCACAGATAGGGAAGGATTTACCATGTCGCCAGCGTACGAACCTCAAT
GCAATAGGTGTGTATCTGCCCCTTTTGCACGAAAACGAGTTTTCGAGGAG
ACTCTCAAGAGTATAGTCAGCCTCCCGTCGTGAAGAATGGAATGGCTGTG
GTGGGCTAGACGGTCCCCTATGACGCTTGATGGGCACCTACTTGCGATTG
CATTGACGTATGTTCTCATCAGTGTTATTTTCTGCCCACGTACATTCCTC
TATGATACCGCGCCAGGACCAAAGCAAGGATGATGCTTTTTCGCATACGG
AAATGGCAGTCCGCATCCTTAAAAATCAGCAGATTCGTGGCGAAGAGTAC
GAGTGGCCGGAGCCAGTCGATGGGAAGGTTTCGATGTTCCCTCTCGAGGT
TTGTTCGTGTTGTGTGGCGAAAAAAATACTTGTTTTAGGGTTTATTTCGT
GGTGTGTGTGTACAAGATGGTGGGATTATAGAGTTATCGTTAGCTGCTCT
TAACCCTTTTGGGACTAAGGCTGTTTTCGGGTAACTGTTTGCTTTTATTA
CACACCCGGTTTTTGTGACTAAGGCTGTTTTCGGGTAACTGTTTGCTATT
ATGGTAGCCAGCAGTTACCCGAAACAGGCTTCGTCCCCGGCTTAGTCCCA
AAAGTTTAAAGAATACTATTAAACAGATACCCGAAAACAGCTTTAGTCCC
AAAAGGGTTAAGTGCAGTTCTTGTGTGGGGGTATCAATTGGTTTAATTGA
TACAGTAGCGTGCCTCCCATAAAACCGACACGCCCAGAACCCTGATATTA
TTGTAAGTTTCATACCAAGAGGCGGGAGGTGTGAGTTCGTACGTTGTTTT
CGCCCTCCCTAGGCTATAGATGTATGAATTAAATCAGGTTGACTTCATGT
GACCACGAGTAAGCGGAATCAGCATCCACTCTTGTGGTTGCAAAAATGGC
GGGCCGGTCGGTTGTAAGTGCGAAAATCAATCAAAATCAATCAACAAATC
GATCTGATTGGGCGTCCGGATTGTCGTCGCTATCGCCTCGTTTTTCCAGA
TAGCTGCGGAAGGCACACACCGACATAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11913:4837..6165+

>mRNA_S-dermatodea_contig11913.1203.1 ID=mRNA_S-dermatodea_contig11913.1203.1|Name=mRNA_S-dermatodea_contig11913.1203.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at S-dermatodea_contig11913:4837..6165+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTTGAGTCCCAGAAAGAATGCCTCGCCGTCATCTGCCGTGTGTTCGA
CGAGACGATGAAGGACGTAAGAGACCGCTACAAGGAGCGTTGCGAGAATA
AAATTGTTGTGCCTGTGGAGGACGTCTACCTTCTGAAGCACAAGAAGAAG
CTGGAGGAGCTGGTGGCAAGCAGACAATTTCGGGCGCAGATGCTTGAGTC
CCAGAAAGAATGCCTCGCCGTCATCTGCCGTGTGTTCGACGAGACGATGA
AGGACGTAAGAGACCGCTACAAGGAGCGTTGCGAGAATAAAATTGTTGTG
CCTGTGGAGGACGTCTACCTTCTGAAGCACAAGAAGAAGCTGGAGGAGCT
GGTGGCAAGCAGACAATTTCGGGCGCAGGACCAAAGCAAGGATGATGCTT
TTTCGCATACGGAAATGGCAGTCCGCATCCTTAAAAATCAGCAGATTCGT
GGCGAAGAGTACGAGTGGCCGGAGCCAGTCGATGGGAAGGTTTCGATGTT
CCCTCTCGAGGACCAAAGCAAGGATGATGCTTTTTCGCATACGGAAATGG
CAGTCCGCATCCTTAAAAATCAGCAGATTCGTGGCGAAGAGTACGAGTGG
CCGGAGCCAGTCGATGGGAAGGTTTCGATGTTCCCTCTCGAGATAGCTGC
GGAAGGCACACACCGACATAGGATAGCTGCGGAAGGCACACACCGACATA
GG
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