prot_S-dermatodea_contig1016.118.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig1016.118.1
Unique Nameprot_S-dermatodea_contig1016.118.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length306
Homology
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BLAST of mRNA_S-dermatodea_contig1016.118.1 vs. uniprot
Match: A0A6H5JZG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG5_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 2.620e-23
Identity = 69/183 (37.70%), Postives = 83/183 (45.36%), Query Frame = 0 
Query:  161 PSPAPVGGGTCSNGVVGVEGFDQ-CCALECGTCGGKGCKDRALSAGLSADDCCVGRISDSGVMCDVSGTAPCTIIAGDNLPG------------------------------------TCSNDLAGVEGFD-MCCVLECGTCGRKGCKDRAQAAGLTADDCCVGKISDAGVMCDASGGAPCII 305
            P  A  G  TCSNG+ G++G    CC+L+CG CGGKGC     + GL  D CC G I  S   CD +  APC I    + PG                                    TCSN L G++G   +CC L+CG CG KGC     A GL  D CC G I  +   CD +  APCII
Sbjct:  231 PLHAQAGAETCSNGLEGIDGSGGVCCSLDCGQCGGKGCYTSGSANGLGGDFCCSGGIKASDEYCDETNEAPCII---GSRPGAKMIHVPSLHVIYDRVTHKQACLANVYLFFLGQSVETCSNGLEGIDGSGGVCCPLDCGQCGGKGCYTSGSANGLGGDFCCSGGIKASDEYCDETNEAPCII 410
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BLAST of mRNA_S-dermatodea_contig1016.118.1 vs. uniprot
Match: A0A6H5K5M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M2_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.710e-13
Identity = 45/121 (37.19%), Postives = 59/121 (48.76%), Query Frame = 0 
Query:  170 TCSNGVVGVEGFDQ-CCALECGTCGGKGCKDRALSAGLSADDCCVGRISDSGVMCDVSGTAPCTIIAGDNLPGTCSNDLAGVEGF-DMCCVLECGTCGRKGCKDRAQAAGLTADDCCVGKI 288
            TCS+G+ G++G    CC L CG CGG GC     + GL +  CC G I  SG  CD +G AP              NDL  ++   ++CC L CG CG  GC   +   GL    C  G++
Sbjct:   81 TCSDGIEGIDGNGAVCCPLGCGQCGGTGCTSAGAANGLDSGSCCGGSIKSSGNYCDDTGEAP--------------NDLECIDHKGEICCPLGCGPCGESGCGITSATNGLGRSCCLSGRM 187
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BLAST of mRNA_S-dermatodea_contig1016.118.1 vs. uniprot
Match: D8LG71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG71_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 4.300e-11
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 0 
Query:  234 IAGDNLPGTCSNDLAGVEG--FDMCCVLECGTCGRKGCKDRAQAAGLTADDCCVGKISDAGVMCDASGGAPCII 305
            +AG     TC+  ++GVE    D+CC LECGTCG  GC   A  + LTA+DCC  +IS++GVMC  +G APCI+
Sbjct:   16 LAGSVGAQTCAGGISGVESTSLDVCCTLECGTCGGVGCTP-ANTSSLTANDCCATEISESGVMCSDTGVAPCIL 88
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BLAST of mRNA_S-dermatodea_contig1016.118.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 3.300e-6
Identity = 29/69 (42.03%), Postives = 40/69 (57.97%), Query Frame = 0 
Query:  237 DNLPGTCSNDLAGVEGFDMCCVLECGTCGRKGCKDRAQAAGLTADDCCVGKISDAGVMCDASGGAPCII 305
            D+    CSN   GV+  ++CC ++CGTCG   C+ R +  GL A DCC   IS  G +C  +  APCI+
Sbjct:    6 DDDDAKCSNGFVGVQSENICCHVDCGTCGGSECRRRGK--GLGAADCCRNYISKNGALCSENLSAPCIM 72
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1016.118.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JZG5_9PHAE2.620e-2337.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5M2_9PHAE2.710e-1337.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG71_ECTSI4.300e-1150.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LRM4_ECTSI3.300e-642.03Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 71..94
e-value: 0.0029
score: 26.8
coord: 119..143
e-value: 300.0
score: 1.1
coord: 47..70
e-value: 0.034
score: 23.3
coord: 23..46
e-value: 4.7E-4
score: 29.5
coord: 95..118
e-value: 0.054
score: 22.6
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 25..44
e-value: 0.084
score: 13.5
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 53..108
e-value: 7.4E-13
score: 48.0
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 49..70
score: 5.486
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 121..143
score: 5.14
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 97..118
score: 6.911
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 25..46
score: 7.712
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 73..94
score: 6.996
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..157
e-value: 3.7E-34
score: 119.4
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 3..156
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 2..140

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1016contigS-dermatodea_contig1016:7416..14429 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1016.118.1mRNA_S-dermatodea_contig1016.118.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig1016 5497..15425 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig1016.118.1 ID=prot_S-dermatodea_contig1016.118.1|Name=mRNA_S-dermatodea_contig1016.118.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=306bp
MLEELNVEDIGIPALPAGFLAGLKNLKILNLSYNSLSELPADFFADLEMV
VDLNLEENKLTELPSGTFSGLTSLEKLDIGNNDLTTLASDVFSPLEMLTQ
LWLNTNKLSVLPADLFLPLENLEILKLSGNDDLVCIPANTAVSLTVPSGF
SGDTCELVESPSPAPVGGGTCSNGVVGVEGFDQCCALECGTCGGKGCKDR
ALSAGLSADDCCVGRISDSGVMCDVSGTAPCTIIAGDNLPGTCSNDLAGV
EGFDMCCVLECGTCGRKGCKDRAQAAGLTADDCCVGKISDAGVMCDASGG
APCII*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf