mRNA_S-dermatodea_contig11843.1155.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11843.1155.1
Unique NamemRNA_S-dermatodea_contig11843.1155.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11843.1155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11843contigS-dermatodea_contig11843:2503..4387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size801
Cds size798
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924219.446188-CDS-S-dermatodea_contig11843:2502..28041622924219.446188-CDS-S-dermatodea_contig11843:2502..2804Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11843 2503..2804 +
1694079101.7973049-CDS-S-dermatodea_contig11843:2502..28041694079101.7973049-CDS-S-dermatodea_contig11843:2502..2804Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11843 2503..2804 +
1622924219.4607432-CDS-S-dermatodea_contig11843:3890..43861622924219.4607432-CDS-S-dermatodea_contig11843:3890..4386Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11843 3891..4386 +
1694079101.8078072-CDS-S-dermatodea_contig11843:3890..43861694079101.8078072-CDS-S-dermatodea_contig11843:3890..4386Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11843 3891..4386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11843.1155.1prot_S-dermatodea_contig11843.1155.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11843 2503..4386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11843.1155.1

>prot_S-dermatodea_contig11843.1155.1 ID=prot_S-dermatodea_contig11843.1155.1|Name=mRNA_S-dermatodea_contig11843.1155.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=266bp
DGPHTERFRGKRLSVGGGGIGAGSATVSSGLFPGAGQHVNTALAGGYMDH
RPAIVTPTFQSGGSGLSAGWSTIGNLGGITAGGAISPGLTGWGADMDAPC
RHKSPFLSESFLEELLVSGKDDETDSPSDSPTGGLSSSASSSRSYPHHEG
HARRFLVANFPPMVAPVSPVPTDRGEQIALSPAPLHRGVVSYYDYVYVSS
STAAGVSPPAFSPGPLSAMPRLTSQVTARDAGYSTPCGGILHNVSPGFRK
TARSWSPAAGSLGGAG
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mRNA from alignment at S-dermatodea_contig11843:2503..4387+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11843.1155.1 ID=mRNA_S-dermatodea_contig11843.1155.1|Name=mRNA_S-dermatodea_contig11843.1155.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1885bp|location=Sequence derived from alignment at S-dermatodea_contig11843:2503..4387+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACGGGCCCCATACCGAGCGTTTCCGCGGAAAGAGGCTTTCGGTCGGCGG
CGGTGGTATTGGTGCCGGTTCGGCGACGGTTTCATCTGGGCTATTCCCGG
GCGCCGGACAGCACGTGAACACCGCGCTTGCTGGGGGGTACATGGACCAT
CGCCCAGCCATTGTGACCCCGACGTTTCAGAGCGGCGGGAGCGGGCTGAG
TGCCGGGTGGTCTACGATAGGGAACCTGGGGGGTATTACCGCGGGTGGGG
CTATTAGCCCCGGGCTCACGGGGTGGGGAGCCGACATGGATGCTCCTTGC
CGGTGAGGCTTGAATATGTCGAGTGTTTGCTTTAATGGTGGTTTGCAATG
TTTTCTTTTTTTGGTGGGATGAAGGGCCACTCACGTGTGCGATGTGTTTT
TTTTTTTATTACGTTTGTTTCGTGAAGGGGAAACCCAGTAAACTTGTTGC
GGCGTGTTGTATAAGGCCTTACGCTTGATTGCGCTGTGACGTGAACCCCA
ACCCACCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCACGCCCACACGCA
CCCGCTTCTCTCTGGTGTTTCGGTCGGGGTGTCGGNNNNNNNNNNTGGTG
GGGGGGGGTGTTGGATGCCGTTCCGTGTGTTGCGGGGGGGGGGGTGCCCT
CCCCCCCCCCCCCCCCCGATGAAACCAGGCAGTTGTTGTTTTTTGTGCGG
CTGCTCCTGTGTTCGTCGTAGGGGCATGGGAGGAAAATATTTATAGAGTC
ACCGTTCTGTTTTGTGTCGCCCCTCGCGATATGCGTATCACTGGTTTCAT
CGCTAACGAAAATTGTGTAATCACAATTGTCACAACTCTTTCGGCGTGAA
AAGTGTATATGGCGGGCTGGGGTCACACATGCAGATTTTATAGCCGGTTG
ACCCCCCTCCCCTAAAAACAAAATAACCTAAAAATTGTTTGCAAAACATA
AAACACCACCCCCACCCACCCACCACACCCCAGCCTCCCCGACGCCANNN
NNNNNNNGGTGACGAACTCAAATTTTAGTTTTGGTATCCCCTCCCCCCCC
AAAAAAAAAAAAAAAATAAATTTCTTTTGAAATGAAAAAAACACCCCCCC
CCCCCCCCTCCCCCCCTCCCGGTGCGCGTGAAGAAGAAGCACGAATGCCG
GGCAGCGAACGGGTGACTAGGATATATGTTTTCGGTGGTCCAGTGTGACC
TCACGAACACCCGTCAAGCGTGACGACTATGCACTCCTCCGTTGCCAACA
CTATTTTTCCACCAGTGATAATTTTTCCCCATCTCCAACGGCCGTGGGAG
TGCTCTGGCTCTATGTGCATGTACACTGATCACCCAACCGTGCTTAACAG
ACCCCCTCCCCCCCCCTCTTGGATTTTCCTGCCAACAGCCACAAGTCTCC
GTTCCTCAGCGAGAGCTTCCTGGAGGAACTCCTCGTCTCCGGAAAGGATG
ACGAAACTGACAGTCCCTCGGACAGCCCCACCGGTGGCCTTTCTTCTTCG
GCCTCCTCCTCCCGTTCATACCCGCACCATGAGGGCCACGCGAGGCGCTT
CTTGGTGGCCAACTTCCCCCCTATGGTGGCCCCGGTCAGCCCGGTACCCA
CGGACCGTGGGGAGCAGATCGCTCTGTCCCCGGCCCCTCTCCACCGCGGC
GTCGTCAGCTACTACGACTACGTGTACGTGAGCTCCTCGACTGCGGCAGG
CGTGTCGCCCCCCGCATTTTCTCCTGGCCCGCTCTCCGCCATGCCGCGCC
TCACTTCCCAGGTCACCGCCAGGGATGCTGGCTACTCCACCCCATGCGGC
GGCATCCTTCACAACGTCAGCCCCGGTTTTAGGAAGACCGCCCGCTCTTG
GTCTCCCGCCGCGGGTTCACTCGGCGGTGCCGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11843:2503..4387+

>mRNA_S-dermatodea_contig11843.1155.1 ID=mRNA_S-dermatodea_contig11843.1155.1|Name=mRNA_S-dermatodea_contig11843.1155.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1596bp|location=Sequence derived from alignment at S-dermatodea_contig11843:2503..4387+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACGGGCCCCATACCGAGCGTTTCCGCGGAAAGAGGCTTTCGGTCGGCGG
CGGTGGTATTGGTGCCGGTTCGGCGACGGTTTCATCTGGGCTATTCCCGG
GCGCCGGACAGCACGTGAACACCGCGCTTGCTGGGGGGTACATGGACCAT
CGCCCAGCCATTGTGACCCCGACGTTTCAGAGCGGCGGGAGCGGGCTGAG
TGCCGGGTGGTCTACGATAGGGAACCTGGGGGGTATTACCGCGGGTGGGG
CTATTAGCCCCGGGCTCACGGGGTGGGGAGCCGACATGGATGCTCCTTGC
CGGACGGGCCCCATACCGAGCGTTTCCGCGGAAAGAGGCTTTCGGTCGGC
GGCGGTGGTATTGGTGCCGGTTCGGCGACGGTTTCATCTGGGCTATTCCC
GGGCGCCGGACAGCACGTGAACACCGCGCTTGCTGGGGGGTACATGGACC
ATCGCCCAGCCATTGTGACCCCGACGTTTCAGAGCGGCGGGAGCGGGCTG
AGTGCCGGGTGGTCTACGATAGGGAACCTGGGGGGTATTACCGCGGGTGG
GGCTATTAGCCCCGGGCTCACGGGGTGGGGAGCCGACATGGATGCTCCTT
GCCGCCACAAGTCTCCGTTCCTCAGCGAGAGCTTCCTGGAGGAACTCCTC
GTCTCCGGAAAGGATGACGAAACTGACAGTCCCTCGGACAGCCCCACCGG
TGGCCTTTCTTCTTCGGCCTCCTCCTCCCGTTCATACCCGCACCATGAGG
GCCACGCGAGGCGCTTCTTGGTGGCCAACTTCCCCCCTATGGTGGCCCCG
GTCAGCCCGGTACCCACGGACCGTGGGGAGCAGATCGCTCTGTCCCCGGC
CCCTCTCCACCGCGGCGTCGTCAGCTACTACGACTACGTGTACGTGAGCT
CCTCGACTGCGGCAGGCGTGTCGCCCCCCGCATTTTCTCCTGGCCCGCTC
TCCGCCATGCCGCGCCTCACTTCCCAGGTCACCGCCAGGGATGCTGGCTA
CTCCACCCCATGCGGCGGCATCCTTCACAACGTCAGCCCCGGTTTTAGGA
AGACCGCCCGCTCTTGGTCTCCCGCCGCGGGTTCACTCGGCGGTGCCGGT
CCACAAGTCTCCGTTCCTCAGCGAGAGCTTCCTGGAGGAACTCCTCGTCT
CCGGAAAGGATGACGAAACTGACAGTCCCTCGGACAGCCCCACCGGTGGC
CTTTCTTCTTCGGCCTCCTCCTCCCGTTCATACCCGCACCATGAGGGCCA
CGCGAGGCGCTTCTTGGTGGCCAACTTCCCCCCTATGGTGGCCCCGGTCA
GCCCGGTACCCACGGACCGTGGGGAGCAGATCGCTCTGTCCCCGGCCCCT
CTCCACCGCGGCGTCGTCAGCTACTACGACTACGTGTACGTGAGCTCCTC
GACTGCGGCAGGCGTGTCGCCCCCCGCATTTTCTCCTGGCCCGCTCTCCG
CCATGCCGCGCCTCACTTCCCAGGTCACCGCCAGGGATGCTGGCTACTCC
ACCCCATGCGGCGGCATCCTTCACAACGTCAGCCCCGGTTTTAGGAAGAC
CGCCCGCTCTTGGTCTCCCGCCGCGGGTTCACTCGGCGGTGCCGGT
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