mRNA_S-dermatodea_contig118.1138.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig118.1138.1
Unique NamemRNA_S-dermatodea_contig118.1138.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig118.1138.1 vs. uniprot
Match: UPI001D048B45 (uncharacterized protein n=1 Tax=Diaporthe batatas TaxID=748121 RepID=UPI001D048B45)

HSP 1 Score: 66.2 bits (160), Expect = 5.290e-10
Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 1
Query:    4 AIVDARDTQGNTPLHYGA--SLCFKNAVAK--LLDAGADPLIRDQDGKTVLHKVANA--DIGCTATAARLIDLGVGVNTRCNKGFTPLHIASEG---GRIDFVR 288
            +I++ +D  G TPLH     ++C K+  A   LL+AGADPLI D +G TVLH V+             +LI+LG  VN R +KG TPL   S G   G++D  +
Sbjct: 1936 SIINQKDKDGKTPLHLATDRAICEKSTTAADALLEAGADPLIADNEGNTVLHIVSRMLWVSSMRPLFKKLIELGCDVNARNSKGETPLFWYSRGFREGKLDIYK 2039          
BLAST of mRNA_S-dermatodea_contig118.1138.1 vs. uniprot
Match: A0A6H5IZD3_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IZD3_9HYME)

HSP 1 Score: 65.1 bits (157), Expect = 1.330e-9
Identity = 37/90 (41.11%), Postives = 52/90 (57.78%), Query Frame = 1
Query:   10 VDARDTQGNTPLHYGASLCFKNAVAK-LLDAGADPLIRDQDGKTVLHKVANADIGCTATAARLIDLGVG------VNTRCNKGFTPLHIA 258
            VDARD +G TPLH    L +K+ + + LLD+GADP  RD DG T LH++ + +     TA   +++  G      +N R  KG TPL +A
Sbjct: 1577 VDARDKKGRTPLHLALGLRWKHRIVRVLLDSGADPNSRDNDGTTPLHRICDENYD-DVTAQTFLEINDGRDEKVEINARDGKGRTPLELA 1665          
BLAST of mRNA_S-dermatodea_contig118.1138.1 vs. uniprot
Match: A0A6H5I5C6_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5I5C6_9HYME)

HSP 1 Score: 63.2 bits (152), Expect = 6.260e-9
Identity = 37/98 (37.76%), Postives = 51/98 (52.04%), Query Frame = 1
Query:   10 VDARDTQGNTPLHYGASLCFKNAVAKLLDAGADPLIRDQDGKTVLHKVANADIGCTATAARLI---DLGVGVNTRCNKGFTPLHIASEGGRIDFVRML 294
            VDARD +GNTPLHY      K ++  LL  GADP   +  GKT LH V     GC     +++      + V+ +   G TPLH+A   G ++F  +L
Sbjct:  527 VDARDEEGNTPLHYALRYGSKGSIELLLSRGADPNAANGKGKTGLHIVCERP-GCVDDLTKMLFEHRSKLLVDAKDQFGETPLHLALRHGHVEFAALL 623          
BLAST of mRNA_S-dermatodea_contig118.1138.1 vs. uniprot
Match: UPI00141F263E (ankyrin repeat domain-containing protein n=1 Tax=Massilia aquatica TaxID=2609000 RepID=UPI00141F263E)

HSP 1 Score: 61.2 bits (147), Expect = 1.740e-8
Identity = 42/105 (40.00%), Postives = 55/105 (52.38%), Query Frame = 1
Query:    1 GAIVDA-RDTQ-GNTPLHYGASLCFKNAVAKLLDAGADPLIRDQDGKTVLHKVAN----ADIGCTATAA-RLIDLGVGVNTRCNKGFTPLHIASEGGRIDFVRML 294
            GA++DA RD Q G T LH   S     A A LL+ GAD  +RD DG T LH +AN    AD G  A  A  ++ LG  ++    +  TPL +A + G+ D    L
Sbjct:  119 GAVIDAPRDAQQGGTALHAALSAGQWRAAAVLLERGADTRLRDDDGNTGLHHLANSAHGADPGAQAALADSMLKLGAAIDASGPQASTPLMLAIDAGKRDLAAFL 223          
BLAST of mRNA_S-dermatodea_contig118.1138.1 vs. uniprot
Match: A0A6H5IPC4_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IPC4_9HYME)

HSP 1 Score: 60.1 bits (144), Expect = 7.340e-8
Identity = 36/99 (36.36%), Postives = 53/99 (53.54%), Query Frame = 1
Query:   10 VDARDTQGNTPLHYGASLCFKNAVAKLLDAGADPLIRDQDGKTVLHKVA--NADIGCTATAARL--IDLGVGVNTRCNKGFTPLHIASEGGRIDFVRML 294
            +DARD +GNTPLH        + V  LL  GA+P + +  GKT LH +   N ++G +        + L V ++ R N+G TPLH+A+  G  + V  L
Sbjct:  256 IDARDDEGNTPLHAAIFSGSIDLVEVLLRRGANPTLANDKGKTPLHVICPRNGNVGLSKLFELNDELQLRVPIDARDNEGSTPLHLATSCGNEELVERL 354          
BLAST of mRNA_S-dermatodea_contig118.1138.1 vs. uniprot
Match: A0A8H4RGB9_9HELO (Uncharacterized protein n=1 Tax=Cudoniella acicularis TaxID=354080 RepID=A0A8H4RGB9_9HELO)

HSP 1 Score: 58.9 bits (141), Expect = 1.890e-7
Identity = 32/86 (37.21%), Postives = 47/86 (54.65%), Query Frame = 1
Query:    4 AIVDARDTQGNTPLHYGASLCFKNAVAKLLDAGADPLIRDQDGKTVLHKVANA----DIGCTATAARLIDLGVGVNTRCNKGFTPL 249
            ++V  ++ +G  P HY         V +L+  GADP  +D +G T LH +A++     +G   T    +DLGV VNT+ NKG TPL
Sbjct: 2000 SLVLQKNKKGYIPYHYAVQKPRIWTVRELVKVGADPTEQDPEGNTALHHLASSLCGGGLGWAPTVKEFLDLGVSVNTKNNKGETPL 2085          
BLAST of mRNA_S-dermatodea_contig118.1138.1 vs. uniprot
Match: A0A6H5I9E5_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5I9E5_9HYME)

HSP 1 Score: 57.8 bits (138), Expect = 4.670e-7
Identity = 34/101 (33.66%), Postives = 49/101 (48.51%), Query Frame = 1
Query:   10 VDARDTQGNTPLHYGASLCFKNAVAKLLDAGADPLIRDQDGKTVLHKVANADIGCTATAARLIDLG------VGVNTRCNKGFTPLHIASEGGRIDFVRML 294
            +DARD  GNTPLH        N +  LL  GAD    ++DG T LH + N +      A R  ++G      V +++R   G TPLH+A     ++ +  L
Sbjct:  702 IDARDKNGNTPLHLAIFYDNPNLLEMLLVRGADLNSLNKDGLTPLHSICNKEEEADDLAKRFFEIGEKFNKPVRIDSRDIDGNTPLHVAIHKNHVNLIGFL 802          
BLAST of mRNA_S-dermatodea_contig118.1138.1 vs. uniprot
Match: UPI000C719308 (tankyrase-2-like n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI000C719308)

HSP 1 Score: 56.6 bits (135), Expect = 1.120e-6
Identity = 35/95 (36.84%), Postives = 50/95 (52.63%), Query Frame = 1
Query:   10 VDARDTQGNTPLHYGASLCFKNAVAKLLDAGADPLIRDQDGKTVLHKVANADIGCTATAARLIDLGVGVNTRCNKGFTPLHIASEGGRIDFVRML 294
            V+ARD +G+TPLHY  S C K     LL  GAD  + ++ G+T LH +                  V VN + N+G TPLH+A+E G+   + +L
Sbjct:  229 VNARDKEGDTPLHYARSNCVK-MFELLLRRGADINVTNERGRTALHVIYKHQ-------------PVQVNAQDNEGNTPLHLAAEFGKDKAMELL 309          
BLAST of mRNA_S-dermatodea_contig118.1138.1 vs. uniprot
Match: UPI0013F23E9C (neurogenic locus notch homolog protein 4-like n=1 Tax=Chelonoidis abingdonii TaxID=106734 RepID=UPI0013F23E9C)

HSP 1 Score: 54.3 bits (129), Expect = 1.680e-6
Identity = 34/81 (41.98%), Postives = 43/81 (53.09%), Query Frame = 1
Query:    1 GAIVDAR-DTQGNTPLHYGASLCFKNAVAKLLDAGADPLIRDQDGKTVLHKVANAD-IGCTATAARLIDLGVGVNTRCNKG 237
            GA +DA+ D  G T LH  A     +AV  LLDAGADP +RD+ G++ LH    AD +G    + R      GV  RC  G
Sbjct:   43 GARLDAQTDATGETALHLAARFARASAVRSLLDAGADPNVRDRAGRSPLHSAIGADALGACQVSVR------GVWMRCGDG 117          
BLAST of mRNA_S-dermatodea_contig118.1138.1 vs. uniprot
Match: UPI001EDE0A0B (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like n=1 Tax=Daphnia pulex TaxID=6669 RepID=UPI001EDE0A0B)

HSP 1 Score: 55.8 bits (133), Expect = 2.200e-6
Identity = 37/93 (39.78%), Postives = 51/93 (54.84%), Query Frame = 1
Query:   10 VDARDTQGNTPLHYGASLCFKNAVAKLLDAGADPLIRDQDGKTVLHKVANADIGCTATAARLIDL--------GVG-VNTRCNKGFTPLHIAS 261
            VD  +  G T LH+ ASL    AV KLLD GA+P + D +GK+ L++ A+   GC      +IDL        G+G VN +  +G T LH A+
Sbjct:  394 VDDANEDGETALHFAASLSNVTAVQKLLDKGANPSVVDNEGKSPLNRAAHERDGCP-----IIDLLLKAKKVKGMGDVNDQNKEGRTALHCAA 481          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig118.1138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001D048B455.290e-1040.38uncharacterized protein n=1 Tax=Diaporthe batatas ... [more]
A0A6H5IZD3_9HYME1.330e-941.11Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A6H5I5C6_9HYME6.260e-937.76Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
UPI00141F263E1.740e-840.00ankyrin repeat domain-containing protein n=1 Tax=M... [more]
A0A6H5IPC4_9HYME7.340e-836.36Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A8H4RGB9_9HELO1.890e-737.21Uncharacterized protein n=1 Tax=Cudoniella acicula... [more]
A0A6H5I9E5_9HYME4.670e-733.66Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
UPI000C7193081.120e-636.84tankyrase-2-like n=1 Tax=Trichogramma pretiosum Ta... [more]
UPI0013F23E9C1.680e-641.98neurogenic locus notch homolog protein 4-like n=1 ... [more]
UPI001EDE0A0B2.200e-639.78serine/threonine-protein phosphatase 6 regulatory ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig118contigS-dermatodea_contig118:8453..8854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.6
Seed ortholog evalue3.2e-07
Seed eggNOG ortholog10224.XP_006820698.1
EggNOG free text desc.calcium channel activity
EggNOG OGs38GCA@33154,3B9FZ@33208,3CWTC@33213,COG0666@1,KOG3609@1,KOG3609@2759,KOG4177@2759
COG Functional cat.MPT
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size402
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924218.2586656-CDS-S-dermatodea_contig118:8452..88541622924218.2586656-CDS-S-dermatodea_contig118:8452..8854Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig118 8453..8854 -
1694079100.938288-CDS-S-dermatodea_contig118:8452..88541694079100.938288-CDS-S-dermatodea_contig118:8452..8854Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig118 8453..8854 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig118.1138.1prot_S-dermatodea_contig118.1138.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig118 8453..8854 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig118.1138.1

>prot_S-dermatodea_contig118.1138.1 ID=prot_S-dermatodea_contig118.1138.1|Name=mRNA_S-dermatodea_contig118.1138.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=134bp
GAIVDARDTQGNTPLHYGASLCFKNAVAKLLDAGADPLIRDQDGKTVLHK
VANADIGCTATAARLIDLGVGVNTRCNKGFTPLHIASEGGRIDFVRMLID
EGANKNVTANDGSTPLRCAARAPDVDVLKFLLES
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mRNA from alignment at S-dermatodea_contig118:8453..8854-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig118.1138.1 ID=mRNA_S-dermatodea_contig118.1138.1|Name=mRNA_S-dermatodea_contig118.1138.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=402bp|location=Sequence derived from alignment at S-dermatodea_contig118:8453..8854- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTGCTATCGTGGACGCCCGCGACACACAAGGCAATACACCTCTGCACTA TGGGGCCAGTCTATGTTTCAAGAATGCCGTTGCCAAGCTTCTGGATGCCG GGGCAGATCCACTCATCCGCGACCAAGACGGCAAGACCGTGTTACATAAG GTCGCGAACGCCGATATCGGCTGTACTGCAACTGCAGCACGGCTGATAGA CCTTGGTGTTGGGGTAAACACACGATGCAACAAAGGCTTTACGCCGCTCC ACATTGCGTCGGAGGGGGGGCGCATCGATTTCGTGCGGATGCTTATTGAC GAAGGTGCAAACAAAAACGTCACGGCAAACGACGGATCAACCCCGCTCCG GTGTGCCGCTCGGGCTCCTGATGTCGACGTTTTGAAATTTCTTTTGGAAT CG
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Coding sequence (CDS) from alignment at S-dermatodea_contig118:8453..8854-

>mRNA_S-dermatodea_contig118.1138.1 ID=mRNA_S-dermatodea_contig118.1138.1|Name=mRNA_S-dermatodea_contig118.1138.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at S-dermatodea_contig118:8453..8854- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTGCTATCGTGGACGCCCGCGACACACAAGGCAATACACCTCTGCACTA
TGGGGCCAGTCTATGTTTCAAGAATGCCGTTGCCAAGCTTCTGGATGCCG
GGGCAGATCCACTCATCCGCGACCAAGACGGCAAGACCGTGTTACATAAG
GTCGCGAACGCCGATATCGGCTGTACTGCAACTGCAGCACGGCTGATAGA
CCTTGGTGTTGGGGTAAACACACGATGCAACAAAGGCTTTACGCCGCTCC
ACATTGCGTCGGAGGGGGGGCGCATCGATTTCGTGCGGATGCTTATTGAC
GAAGGTGCAAACAAAAACGTCACGGCAAACGACGGATCAACCCCGCTCCG
GTGTGCCGCTCGGGCTCCTGATGTCGACGTTTTGAAATTTCTTTTGGAAT
CGGGTGCTATCGTGGACGCCCGCGACACACAAGGCAATACACCTCTGCAC
TATGGGGCCAGTCTATGTTTCAAGAATGCCGTTGCCAAGCTTCTGGATGC
CGGGGCAGATCCACTCATCCGCGACCAAGACGGCAAGACCGTGTTACATA
AGGTCGCGAACGCCGATATCGGCTGTACTGCAACTGCAGCACGGCTGATA
GACCTTGGTGTTGGGGTAAACACACGATGCAACAAAGGCTTTACGCCGCT
CCACATTGCGTCGGAGGGGGGGCGCATCGATTTCGTGCGGATGCTTATTG
ACGAAGGTGCAAACAAAAACGTCACGGCAAACGACGGATCAACCCCGCTC
CGGTGTGCCGCTCGGGCTCCTGATGTCGACGTTTTGAAATTTCTTTTGGA
ATCG
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