mRNA_S-dermatodea_contig11787.1132.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11787.1132.1
Unique NamemRNA_S-dermatodea_contig11787.1132.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig11787.1132.1 vs. uniprot
Match: D8LLH7_ECTSI (PINc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLH7_ECTSI)

HSP 1 Score: 422 bits (1084), Expect = 4.640e-141
Identity = 214/320 (66.88%), Postives = 257/320 (80.31%), Query Frame = 1 
Query:    7 QITSQIMALELNSKKKSAAEEG--------EAGSPGRVYLSLDEYKAATAAGDMKPYKGTKYKTVDDRYADGWAYNPTTSRWLKVACQEKKAAIEAHPALIARLEMLESKVKLSTQRSQLLETKAEKILMDKTTRPTATLSTPTAPELMVFDTNWLIHDLGDAKCRIADIAGRHPDTSILIPKEVLRELDRLKTGGKDDATRYSAREANRYLLSLLEKPLEDRREFPVVRGQDDTELYRDDGYHDRPGYLRGDDSILNCCMFFSQGIKTPRKVTLCTGDNNFAIRARSNGLSTESRPRCVPGRCPMPLCPGPPRQSPFAR 942
            ++ SQ+ ALE+++ K S  +EG        +AG  G+ YLSL+EYK ATA+G++KPYKGTKY+TVDDRYADGWAYNPTT RW+KVACQEKK AIEA PAL+ARLE++ES+ KL+TQRSQLLETK E+I   K  + T +L+ PTAP L+ FDTNWLIH L D  CR++DIAGR  DTS+LIPK VL ELDRLKT G+D+ATR SA++ANRY   L+EKPLE  REFPVVR Q+DTEL+RD+G+H RP  L GDDSILNCCMFF+QGI TPRKVTL TGDNNFAIRA ++GL+T  RP+C PG C MPLCP PPR SPF+R
Sbjct:  317 ELASQLTALEIDAGKGSVDDEGKEKVANGGDAGK-GKAYLSLEEYKEATASGEIKPYKGTKYQTVDDRYADGWAYNPTTRRWIKVACQEKKDAIEALPALLARLELMESRDKLATQRSQLLETKVEEI---KKKKDTVSLAMPTAPVLVAFDTNWLIHRLADTMCRVSDIAGRQKDTSVLIPKAVLTELDRLKTRGRDEATRSSAQKANRYFRGLVEKPLERGREFPVVRVQEDTELFRDNGHHSRPEGLGGDDSILNCCMFFTQGIDTPRKVTLVTGDNNFAIRATAHGLTTTGRPQCDPGHCRMPLCPAPPRPSPFSR 632
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BLAST of mRNA_S-dermatodea_contig11787.1132.1 vs. uniprot
Match: A0A6H5JRN9_9PHAE (PINc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRN9_9PHAE)

HSP 1 Score: 424 bits (1091), Expect = 3.040e-139
Identity = 214/319 (67.08%), Postives = 255/319 (79.94%), Query Frame = 1 
Query:    7 QITSQIMALELNSKKKSAAE-------EGEAGSPGRVYLSLDEYKAATAAGDMKPYKGTKYKTVDDRYADGWAYNPTTSRWLKVACQEKKAAIEAHPALIARLEMLESKVKLSTQRSQLLETKAEKILMDKTTRPTATLSTPTAPELMVFDTNWLIHDLGDAKCRIADIAGRHPDTSILIPKEVLRELDRLKTGGKDDATRYSAREANRYLLSLLEKPLEDRREFPVVRGQDDTELYRDDGYHDRPGYLRGDDSILNCCMFFSQGIKTPRKVTLCTGDNNFAIRARSNGLSTESRPRCVPGRCPMPLCPGPPRQSPFAR 942
            ++ SQ+ ALEL++ K S A+       +G+    G+ YLSL EYK ATA+G++KPYKGTKY+TVDDRYADGWAYNPTT RW+KVACQEKK AIEA PAL+ARLE++ES+ KL+TQRSQLLETK E+I   K  + T +L+ PTAP L+ FDTNWLIH L D  CR++DIAGR  DTS+LIPK VL ELDRLKT G+D+ATR SA++ANRY   L+EKPLE  REFPVVR QDDTEL+RD+G+H RP  L GDDSILNCCMFF+QGI TPRKVTL TGDNNFAIRA ++GL+T  RP+C PG C MPLCP PPR SPF+R
Sbjct:  554 ELASQLTALELDAGKGSVADKGKEKVADGDDAGKGKAYLSLKEYKEATASGEIKPYKGTKYQTVDDRYADGWAYNPTTRRWIKVACQEKKDAIEALPALLARLELMESRDKLATQRSQLLETKVEEI---KKKKDTVSLAVPTAPVLVAFDTNWLIHRLADTMCRVSDIAGRQKDTSVLIPKAVLTELDRLKTRGRDEATRSSAQKANRYFRGLVEKPLERGREFPVVRVQDDTELFRDNGHHSRPEGLGGDDSILNCCMFFTQGIDTPRKVTLVTGDNNFAIRATAHGLTTTGRPQCDPGHCRMPLCPAPPRPSPFSR 869
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BLAST of mRNA_S-dermatodea_contig11787.1132.1 vs. uniprot
Match: A0A836CK80_9STRA (PIN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK80_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.890e-39
Identity = 109/295 (36.95%), Postives = 150/295 (50.85%), Query Frame = 1 
Query:   91 RVYLSLDEYKAATAAGDMKPYKGTKYKTVDDRYADGWAYNPTTSRWLKVACQEKKAAI----EAHPALIARLEMLESKVKLSTQRS----QLLETKAEKILMDKTTRPTATLST------------------PTAPELMVFDTNWLIHDLGDAKCRIADIAGRHPDTSILIPKEVLRELDRLKTGGKDDATRYSAREANRYLLSLLEKPLEDRREFPVVRGQDDTELYRDDGYHDRPGYLRGDDSILNCCMFFSQGIKTPRKVTLCTGDNNFAIRARSNGLSTESRPRCVPGRCP 897
            R YL ++EY A  AAG +  Y G  Y +   RYADGWA    + RW+K   Q+ +AA+      + AL  R+E+ ++  + +  R+    +LLE  A+        +  A LS                   P AP L+V DTN L+H L  A     D+     D SIL+P+EV RELDR K G + +  ++ AREA R L +LL+ P     E+P +RGQ D ELY D G+H  P  LR DD+ILNCC++F        +V LCT D  F   A +NG+ + S     P R P
Sbjct:  473 RGYLLVEEYAAEVAAGRLPAYSGKAYASAAARYADGWAVGVPSRRWVKAQRQQARAAVTNMARENEALRRRVEVADAAQEAARARAAEATELLERVADMA------QQVAKLSEQXXXXXXXXXXXXXXXXXPAAPVLLVLDTNCLLHCLEGAARLARDVLRARGDASILVPREVYRELDR-KKGDRVETLQFKAREAGRVLQALLDYPRSG--EYPALRGQGDHELYTDSGHHAAPARLRADDAILNCCLYFQNTAGC--RVILCTEDQYFRQIATANGICSRSVWHIDPYRLP 756
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BLAST of mRNA_S-dermatodea_contig11787.1132.1 vs. uniprot
Match: A0A7S3XKL4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKL4_HETAK)

HSP 1 Score: 98.2 bits (243), Expect = 1.610e-21
Identity = 59/129 (45.74%), Postives = 76/129 (58.91%), Query Frame = 1 
Query:  415 APELMVFDTNWLIHDL--GDAKCRIADIAGRHPDTSILIPKEVLRELDRLKTGGK---DDATRYSAREANRYLLSLLEKP--LEDRREFPVVRGQDDTELYRDD--GYHDRPGYLRGDDSILNCCMFFS 774
            AP L VFDTN  + D   GD +     +    PD  +L+P+EVLRELD LK GG    D+ T + ARE +R +  LL  P  L   R +P++RGQ D EL+RD   G H RP  LR D ++LNCC+ FS
Sbjct:    7 APVLWVFDTNVWMEDAATGDVRYAANVVLSARPDVQLLLPREVLRELDGLKKGGPGRGDERTAFQAREGSRLVEELLTDPRGLGAGRRYPLLRGQRDGELWRDPQGGIHGRPERLRADAAVLNCCLHFS 135
[Close]
BLAST of mRNA_S-dermatodea_contig11787.1132.1 vs. uniprot
Match: A0A7S2XI71_9EUKA (Hypothetical protein n=2 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XI71_9EUKA)

HSP 1 Score: 83.6 bits (205), Expect = 6.040e-15
Identity = 57/152 (37.50%), Postives = 78/152 (51.32%), Query Frame = 1 
Query:  424 LMVFDTNWLIHD------LGDAKCRIADIAGRHPDTSILIPKEVLRELDRLKTGGKDDATRYSAREANRYLLSLLEKPLEDRREFPVVRGQDDTELYRDDGYHDRPGYLRGDDSILNCCMFFSQGIKTPRKVTLCTGDNNFAIRARSNGLST 861
            L V DTNWLI +      LGD         G     ++LIP+ V RELD L    ++   + +A+ A R + +   +    +  F  V GQ D E+Y D G+H  P  L+ DDSILNCC+FFS+   +   V LCT D N  IRA+   + T
Sbjct:  100 LFVIDTNWLIKEPEVARGLGDK----IHALGLIKKVAVLIPRAVWRELDGLSKSARE--CKNNAQRAIRSIYNEFGR----QSSFRTVLGQMDHEIYTDKGHHINPRALKNDDSILNCCLFFSRNQGSV--VHLCTADKNLLIRAKVEQVQT 239
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BLAST of mRNA_S-dermatodea_contig11787.1132.1 vs. uniprot
Match: A0A162WQ14_PHYB8 (PINc domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162WQ14_PHYB8)

HSP 1 Score: 76.3 bits (186), Expect = 6.570e-12
Identity = 53/151 (35.10%), Postives = 83/151 (54.97%), Query Frame = 1 
Query:  421 ELMVFDTNWLIHDLGDAKCRIADIAGRHPDT-SILIPKEVLRELDRLKTG-GKDDATRYSAREANRYLLSLLEKPLEDRREFPVVRGQDDTELYRDDGYHDRPGYLRGDDSILNCCMFFSQGIKTPRKVTLCTGDNNFAIRARSNGLSTES 867
            +++V DTN+LI +LG  +  +   A  HP+  ++++P  V+RELD LK    +D     +  E  R ++  LEK L  R + P +RGQ   E+Y       +     GDDSIL+CCM+F   +   + VTL + D N +I+A  +G+ T S
Sbjct:   72 QVIVLDTNFLISNLGYLQSLLTKTA-LHPNVITLVVPWAVVRELDGLKYAKSRDKNGGATLGELARTVMRFLEKEL--RNKTPCLRGQKSNEIY-----DPKAKKALGDDSILDCCMYFMHSVS--KYVTLFSNDRNLSIKAMIHGIDTLS 212
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BLAST of mRNA_S-dermatodea_contig11787.1132.1 vs. uniprot
Match: A0A077W7A6_9FUNG (PINc domain-containing protein n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077W7A6_9FUNG)

HSP 1 Score: 75.9 bits (185), Expect = 1.100e-11
Identity = 50/153 (32.68%), Postives = 80/153 (52.29%), Query Frame = 1 
Query:  421 ELMVFDTNWLIHDLGDAKCRIADIAGRHPDTSILIPKEVLRELDRLKTGGKDDATRYSAREANRYLLSLLEKPLEDRREFPVVRGQDDTELYRDDGYHDRPGYLRGDDSILNCCMFFSQGIKTPRKVTLCTGDNNFAIRARSN---GLSTESR 870
            ++ + DTN+LI +L   +   +  A  H    +++P  V++ELD LK       TR    +  R  +  +E  L +RR  P +RGQ   E+Y      ++    +GDDSIL+CC+FF    +  ++VTL T D N AI+A  +    LS E++
Sbjct:   74 QVAILDTNFLISNLAYLRTLTSQAAKYHGSLVLVVPWIVVKELDGLKGMNHQQITRGDLGDLARKAMKFIEGALRERR--PWLRGQKSYEIY-----DEKAKLSKGDDSILDCCLFFHN--RMGKRVTLLTNDRNLAIQAMIHDVRSLSAENK 217
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BLAST of mRNA_S-dermatodea_contig11787.1132.1 vs. uniprot
Match: A0A8H7UTX6_9FUNG (PINc domain-containing protein n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7UTX6_9FUNG)

HSP 1 Score: 74.3 bits (181), Expect = 2.870e-11
Identity = 56/156 (35.90%), Postives = 86/156 (55.13%), Query Frame = 1 
Query:  421 ELMVFDTNWLIHDLGDAKCRIADIAGRHPDTS-ILIPKEVLRELDRLKTGGKDDATRYSAREANRYLLSLLEKPLEDRREFPVVRGQDDTELYRDDGYHDRPGYLRGDDSILNCCMFFSQGIKTPRKVTLCTGDNNFAIRARSN---GLSTESRPR 876
            E+ V DTN+L+  LG     + D+A  +P +  +L+P  V+RELD LK G  D +   SAR+A R++   L      R +   +RGQ   E++  D   ++    +GDD IL+CCM+F Q I+  +KVTL + D N  I+   +    +S ES P+
Sbjct:   64 EICVLDTNFLLSKLGYLDT-VLDLASENPGSLLVLLPWVVIRELDGLKQGNPDISA--SARKAMRFIEMRL------RDKIISLRGQKMNEVWNKDMLKNQN--TKGDDRILDCCMYFQQIIQ--KKVTLLSNDRNLCIKVMVHDIDSISAESVPK 206
[Close]
BLAST of mRNA_S-dermatodea_contig11787.1132.1 vs. uniprot
Match: A0A068SE92_9FUNG (PINc domain-containing protein n=1 Tax=Lichtheimia corymbifera JMRC:FSU:9682 TaxID=1263082 RepID=A0A068SE92_9FUNG)

HSP 1 Score: 74.3 bits (181), Expect = 3.760e-11
Identity = 50/153 (32.68%), Postives = 80/153 (52.29%), Query Frame = 1 
Query:  421 ELMVFDTNWLIHDLGDAKCRIADIAGRHPDTSILIPKEVLRELDRLKTGGKDDATRYSAREANRYLLSLLEKPLEDRREFPVVRGQDDTELYRDDGYHDRPGYLRGDDSILNCCMFFSQGIKTPRKVTLCTGDNNFAIRARSN---GLSTESR 870
            ++ + DTN+LI +L   +   +  A  H    +++P  V++ELD LK       TR    +  R  +  +E  L +RR  P +RGQ   E+Y ++         +GDDSIL+CC+FF    +  ++VTL T D N AI+A  +    LS E++
Sbjct:   75 QVAILDTNFLISNLAYLRTLTSQAAKYHGSLVLVVPWIVVKELDGLKGMNHQQITRGDLGDLARKAMRFIEGALRERR--PWLRGQKSYEVYDENAK-----LSKGDDSILDCCLFFHN--RMGKRVTLLTNDRNLAIQAMIHDVRSLSAENK 218
[Close]
BLAST of mRNA_S-dermatodea_contig11787.1132.1 vs. uniprot
Match: A0A367KXB2_RHIST (PINc domain-containing protein n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KXB2_RHIST)

HSP 1 Score: 72.4 bits (176), Expect = 1.000e-10
Identity = 55/156 (35.26%), Postives = 76/156 (48.72%), Query Frame = 1 
Query:  406 TPTAPELMVFDTNWLIHDLGDAKCRIADIAGRHPDTS-ILIPKEVLRELDRLKTGGKDDATRYSAREANRYL-LSLLEKPLEDRREFPVVRGQDDTELYRDDGYHDRPGYLRGDDSILNCCMFFSQGIKTPRKVTLCTGDNNFAIRARSNGLSTES 867
            TP+  E+ V DTN+L+  LG     + DIA ++P +  +L+P  V+RELD LK    D     SAR+A R+L L L +K                             G  +GDD IL+CCM+F Q   T RKVTL + D N  +    + +S ES
Sbjct:   51 TPSFAEIAVLDTNFLLSKLGFLDA-LLDIANKYPGSLLVLLPWVVIRELDGLKGSRNDTDVCASARKAMRFLELRLRDK---------------------------MAGNAKGDDRILDCCMYFQQA--TQRKVTLLSNDRNLLMVHDIDSISAES 176
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11787.1132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LLH7_ECTSI4.640e-14166.88PINc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JRN9_9PHAE3.040e-13967.08PINc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A836CK80_9STRA1.890e-3936.95PIN domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3XKL4_HETAK1.610e-2145.74Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2XI71_9EUKA6.040e-1537.50Hypothetical protein n=2 Tax=Lotharella oceanica T... [more]
A0A162WQ14_PHYB86.570e-1235.10PINc domain-containing protein n=1 Tax=Phycomyces ... [more]
A0A077W7A6_9FUNG1.100e-1132.68PINc domain-containing protein n=1 Tax=Lichtheimia... [more]
A0A8H7UTX6_9FUNG2.870e-1135.90PINc domain-containing protein n=1 Tax=Mucor plumb... [more]
A0A068SE92_9FUNG3.760e-1132.68PINc domain-containing protein n=1 Tax=Lichtheimia... [more]
A0A367KXB2_RHIST1.000e-1035.26PINc domain-containing protein n=1 Tax=Rhizopus st... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11787contigS-dermatodea_contig11787:112..6237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue3.7e-22
Seed eggNOG ortholog227086.JGI_V11_73744
Preferred nameSWT1
KEGG koko:K01669
GOsGO:0000956,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006351,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0018130,GO:0019222,GO:0019438,GO:0019439,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0071025,GO:0071027,GO:0071028,GO:0071032,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097659,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576
EggNOG free text desc.nuclear mRNA surveillance of mRNP export
EggNOG OGsKOG4689@1,KOG4689@2759
EC4.1.99.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons7
Model size990
Cds size933
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924217.6452475-UTR-S-dermatodea_contig11787:111..1441622924217.6452475-UTR-S-dermatodea_contig11787:111..144Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11787 112..144 -
1694079100.4453042-UTR-S-dermatodea_contig11787:111..1441694079100.4453042-UTR-S-dermatodea_contig11787:111..144Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11787 112..144 -
1622924217.7357435-UTR-S-dermatodea_contig11787:6213..62371622924217.7357435-UTR-S-dermatodea_contig11787:6213..6237Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11787 6214..6237 -
1694079100.5162601-UTR-S-dermatodea_contig11787:6213..62371694079100.5162601-UTR-S-dermatodea_contig11787:6213..6237Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11787 6214..6237 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924217.654749-CDS-S-dermatodea_contig11787:144..3031622924217.654749-CDS-S-dermatodea_contig11787:144..303Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11787 145..303 -
1694079100.4551592-CDS-S-dermatodea_contig11787:144..3031694079100.4551592-CDS-S-dermatodea_contig11787:144..303Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11787 145..303 -
1622924217.670212-CDS-S-dermatodea_contig11787:1552..16521622924217.670212-CDS-S-dermatodea_contig11787:1552..1652Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11787 1553..1652 -
1694079100.4627643-CDS-S-dermatodea_contig11787:1552..16521694079100.4627643-CDS-S-dermatodea_contig11787:1552..1652Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11787 1553..1652 -
1622924217.6803894-CDS-S-dermatodea_contig11787:2545..26491622924217.6803894-CDS-S-dermatodea_contig11787:2545..2649Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11787 2546..2649 -
1694079100.4703517-CDS-S-dermatodea_contig11787:2545..26491694079100.4703517-CDS-S-dermatodea_contig11787:2545..2649Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11787 2546..2649 -
1622924217.6886992-CDS-S-dermatodea_contig11787:3744..39441622924217.6886992-CDS-S-dermatodea_contig11787:3744..3944Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11787 3745..3944 -
1694079100.4780796-CDS-S-dermatodea_contig11787:3744..39441694079100.4780796-CDS-S-dermatodea_contig11787:3744..3944Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11787 3745..3944 -
1622924217.7023242-CDS-S-dermatodea_contig11787:4626..47351622924217.7023242-CDS-S-dermatodea_contig11787:4626..4735Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11787 4627..4735 -
1694079100.4859173-CDS-S-dermatodea_contig11787:4626..47351694079100.4859173-CDS-S-dermatodea_contig11787:4626..4735Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11787 4627..4735 -
1622924217.7147298-CDS-S-dermatodea_contig11787:5347..54961622924217.7147298-CDS-S-dermatodea_contig11787:5347..5496Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11787 5348..5496 -
1694079100.4951704-CDS-S-dermatodea_contig11787:5347..54961694079100.4951704-CDS-S-dermatodea_contig11787:5347..5496Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11787 5348..5496 -
1622924217.7256715-CDS-S-dermatodea_contig11787:6101..62131622924217.7256715-CDS-S-dermatodea_contig11787:6101..6213Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11787 6102..6213 -
1694079100.5055482-CDS-S-dermatodea_contig11787:6101..62131694079100.5055482-CDS-S-dermatodea_contig11787:6101..6213Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11787 6102..6213 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11787.1132.1prot_S-dermatodea_contig11787.1132.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11787 145..6213 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11787.1132.1

>prot_S-dermatodea_contig11787.1132.1 ID=prot_S-dermatodea_contig11787.1132.1|Name=mRNA_S-dermatodea_contig11787.1132.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=311bp
MALELNSKKKSAAEEGEAGSPGRVYLSLDEYKAATAAGDMKPYKGTKYKT
VDDRYADGWAYNPTTSRWLKVACQEKKAAIEAHPALIARLEMLESKVKLS
TQRSQLLETKAEKILMDKTTRPTATLSTPTAPELMVFDTNWLIHDLGDAK
CRIADIAGRHPDTSILIPKEVLRELDRLKTGGKDDATRYSAREANRYLLS
LLEKPLEDRREFPVVRGQDDTELYRDDGYHDRPGYLRGDDSILNCCMFFS
QGIKTPRKVTLCTGDNNFAIRARSNGLSTESRPRCVPGRCPMPLCPGPPR
QSPFARNSYR*
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mRNA from alignment at S-dermatodea_contig11787:112..6237-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11787.1132.1 ID=mRNA_S-dermatodea_contig11787.1132.1|Name=mRNA_S-dermatodea_contig11787.1132.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6126bp|location=Sequence derived from alignment at S-dermatodea_contig11787:112..6237- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCGAGCAGATCACTAGCCAGATAATGGCTCTAGAGTTGAACTCGAAGAA
GAAGAGCGCGGCCGAGGAAGGCGAGGCCGGCAGCCCCGGAAGGGTGTACC
TTTCGCTTGATGAGTACAAGGCTGCGACGGCGGCAGGTACACTACCGAGT
GAATTTTCTGCATATCACGTCTTGCATCGTCGGTCGGGTATTATCTACTG
CTCTGTTGGCTGACACTGCAAGTATTTTGTAGGCTTTGCCCTCGATGGAA
GAAGACGTGCGTGTGTTTTACGTTGCCCGTAGATGGAGGATTGCGTACAG
CTCGCTTGTTGGCTCTTCGCCCCTTTCTCCTTGGCCATCGAAAAGGTTTC
ACTCCGCTGTTGCAGTTTCAGTGCAGCACAGTATTCCGAGGGTTTCGTCT
GTAGTCTCCTCTGTCTGCTCAACCCCGAGCTTTTTCCGCGCATCTTTTTT
CATTTTTGGGAGGGCGATACGCTTCTTACCCAACAATCGTCTCCATCGTC
ACTCCCGTGCTTACCGCCCAGACCATATGGGTACCACTGCTCTCCGCCGA
AATCAGATCGGCCGTTATGCTCTCCGCTCCCCGGGATTTCGTGTCAATAA
GCGTGTCTTGCCGTAACTCCTGCTTTGATAAAACACCGCACCTATTATAG
TACCTCATCCATCCACGCTCGCGTCGCGACGCCCCCCCTAACCCCCCCCC
CCCAAATACACACAAACACACGCCTCTTTTCCCGGGACCAGGCGACATGA
AGCCTTACAAAGGCACCAAGTACAAGACCGTGGACGACCGCTACGCTGAC
GGTTGGGCCTACAACCCAACCACCAGCCGCTGGCTCAAAGTCGCATGCCA
GGAAAAGAAGGCGGCCATCGAGGCCCACCCCGCCCTTATCGTGAGTGATT
CGAGATTTGTGTAAAGTCGTCGTCGTGCGCCGTGAATGATAATGTTTTCC
CCCGTTCGGAGTCATATAATGCCAAGCCACAGAAAGCAGCTCGTGCCGTG
TTTGGAGCGCTGCGATAGCAGGTGGCGATTTCGTGCCAGGTTTCAAGTCG
TGGGATCCTATAGCATGTGCGCGAGTTTGCCCCGCGCCGTGCTTTTCTGC
CGTCCGCGGTGTTACGGTCGCCCGGGCGGGCTGACGGGCAGACGCGGCAA
TCCAGCGATTCCGTATTGTTCGCAGGTGCATTGGTGGGCATAACGCAGAC
CCAAGCTCACTTGAATATTGTTGCTATTCTACGTATGCTCTATCGATACG
TGTAAGCGGCGGCACACACGCCATGGCCGCTATCTATTCCGGAATCGTGT
TGTTGACGTGCTTTTTGTGTCGCGTGGGTCGATCTCAGAGAGAGACTCGC
AGGCAGGTGAAGCCATTTTTCCGGCGCGTTTACGAAACACAGGTCGTCCT
GCTTTCATTCAGTGCGAGTATGTATACGGGCTTTCGAAGAGTTCGTTCAA
GCGTTGTTGAGGTTTCGCTTCCCGGACGCCTGCCTCGCCCCCGGCTCCGC
AGGCCAGGCTAGAAATGCTGGAGAGCAAGGTGAAGCTGTCCACCCAGCGG
TCCCAGCTACTGGAAACCAAGGCGGAGAAGATTCTGATGGACAAGACGAC
AAGGCCGACAGGTAGGTGATGGTGGACGGCGGACGATTAGGGATGCATGA
TACAGGAGTCCCGTGTATACTGCTTCGTGCTAAGGCCACGCCTTATGGGA
CCAGAAAAATACAAAAATATAATACCAACATTTGTTCATTTCCGTTCCAA
AATTTCTGTACGTTGTTTTCATGTGCGCCGCCTTATGGGCTTTGCGCAAA
AAATAAATAAAGCACGGAAATGGGAGACGGAGACCCGGACTTCTAAATCT
TTACTGACCCAATTCAACTTGAATTGAGAGGGTATGTGCTAATTACTATA
TATTTGTTCCTTCTCGTTGTGTGAAGCTTTTCGTATGCACCTACAAGTGT
GCAGATAGCTCTAATTCCGTAGATTTTTTCGAGTTCATGATTCATCATCG
GCCCATGAGCGGGATCGGCCATGAATTGGCGGGCCGGTCGGATGTAAAGT
GTGATAATCAACCAACCAATCAATCCATCAGCGGATCAGGTCGTTCACAA
CACGCGAATACACGATTTCGTGGTGCTACGATAGCTACCGTACGTACGTC
TGTAGAACCACGCACGAAGACTAGCACTTCCCTTCGTCACCATCGTATCG
CCCGCGTCTAGCGGCACACGCTCGCGTGCATGTTTTCTATTATTAACGCA
CCCTACGGCTCCGTCATAAACTCGTCAACCTTGCCAACGACAGCGACGCT
GTCGACTCCCACGGCTCCCGAGCTGATGGTGTTCGACACAAACTGGCTCA
TCCACGACCTTGGCGACGCCAAGTGCCGTATCGCCGACATCGCCGGCCGC
CACCCCGACACATCGATTCTCATTCCGAAGGAGGTGCTGAGGGAGCTGGA
TAGGCTCAAGACCGGGGGGAAGGATGATGCCACGCGCTACAGCGTAAGTT
ACTTTTCTTTTGCTGTGTTTTTTTTTTTAATTTATTTTTTCATTCCCGTG
AAAGTTCCCTGCTTCGCTGCATATTGCAAACGTTTTTAGCGTTGTTCTGA
TGCTGTATTAAAATCCGCGTCGGCATGGACTGAGGGCAAGGCTAATATTG
GTTTCGGCATCGCCCCGTCGCCACCGCTCGGGTTTCGTATGTTTGTATGC
GTTTAGAGACTGCGGCAATTGATTGTTTCCTTGGATTCATACGGTTTGTT
TGCTCGCGCCTATCATAGAAGGGCCACGTGGCTTGCTCACGTGGGGCTGG
TTGGTCAAGTTTACCGGCGGTTCGTTAGGTTTTGCTCTTTTCGTTTTTCT
TGAGAACCCTAATAAATGTTGCTCTTTTTTCAAGTGTTTTTTCATATATT
CTCGGTACGGTTTTGTTTACACCCCAATCCCCCTTAATCAAGTAGACCTC
CACAATTCATTGGATTGAGACACTGGTTTCCCCGTGGCCTCTTTGTCGTG
TACTGTTGAGTATGAAGGGGTTCCAGAGTAAGTTTCCATGGTGAAAATTA
CTTTAGTTATATATGGAGCGATGATGTACAGATATGACCCACTGTAGGTA
ATATTCGTGAATGCTACACTTTGTGGTTAATTAATGGATACTCTGGCTTG
GCCGCTACACCCAGCCACGGCTTTGGCAGCAGTACAAGTGACGGTGGTAT
CATAGCAGCAGTACTCCCGTGCTGTGGCGTTTTTGCAGAAACATGTATCA
TGCACCTTCACTGCTCAGGCTAAGATCGAGGGGGTGGTATGTCGTGGACA
TGTCATGCAGGAGGTTATCCTGGTATTAAAACACCATGTCTCCAACACTC
GTAGGTCGACAAGGCAGAGAAACGCTGACCAAATCCAGCCCCCCCCCCCC
TCCCCCCCCTCTGCTCCGTCCTCCCTAGGACGCGTGGCCAATGACCTAGC
AGCTAAGGTTGCAAAACTTACCTCTGCTCCGTCCTGTCTAGGACGCGTGG
CCAATGGCCTAGCAGCTAAGGTTGCAAAACTTGAGTACGCCCCCCCCCCC
CCCGCCCCCGTTATTGCCGCCCAACCGTGGCCATTCAGGCGCGTGAAGCC
AATCGGTACCTGCTGTCCCTCCTAGAGAAGCCGCTCGAGGACCGGAGAGA
GTTCCCAGTTGTGCGCGGCCAGGATGACACGGAGCTTTACCGGTAAGCGG
GGATACTGCCATCATGGAACGTGCACCGCATGAGTGCCGCATGTTTGCTA
GAGAAGAAGGCGTGCGTGCGACGGATCGAGGTGTCGAGGCTCTTTTCATT
TTCATCGCCGCTCTGGTTGGTTAACTGCGGGCTGTTGAGAGGACGCCTCG
ATGTAGCGAAAGCGTGGGTGACTGCGACCGTTACGTTGTTGGAGCGTGGC
ATCTGCAGGGACCGATGTTCAGAGCGCGTGCGCGTGTTTACGTCATCGCC
TGCAAGGGGTTTGCAGAGGCTGTAGACGCGTTTCATGTGCAACTGTCGAA
TTTTGTCGCACCAGTTACTTTGAGAAATTCAATGTCAAATTGACTTGCGT
TTTGCCGACCGTCTATTGCGTGGTATGTACAGTCCGGCAAGGAACTGCTG
TTTTACATGTTGCCGAAAACCCTCCCCATTCACGCTTAAAACTGGGCCCT
GTGTTGCCTTGGTCACGGTTGTGGCCCGCCGACGTACACTCAACTTGAAA
TCTAGCAACATTGACATTCACGTTCTTGATCCGCGGGACAATCGTCGTTC
AAAGGTGCAGCTTGTAACGTTGATGTGCCACCACGTATCGCTGTTACATC
GTGTTATAATGAGTATGTGTTGGCGGGGGGCGGGGGGCGGGAGGGAGGGG
GGGGGGAGGGAGCTCAACTATATCGAACGTTGTCACCATAACTGTTTGAA
CAGAAAATCACTGATACAATGAAACCACTTTACCGCACAGCTTGTGTTTG
GCCACCCTGTTTTCTGCTAGCTTATAGTAAAACACATGGCGGAGAGTTTT
CGGCCAATCGAGATCCTCCTTTCAACAACAATGGACCAACCAGAAACCTG
CGGGCGCCTTTCTCGTTCCTTTCTGTTACTCGCAGGGATGACGGGTACCA
CGACAGGCCTGGCTATCTCCGCGGCGACGATTCGATCCTGAACTGCTGCA
TGTTCTTCAGCCAGGGGATCAAGACACCCCGCAAGGTTAGGCCACAAGCT
GAGAGCTGTATGGATGGTGGACGTGCGTATGTGGCGCACTCTCTCATTTC
CAGGGTGATCATAATTAAGTCATGCACACATTCGAAGCGCACATTTGGGC
GGAGGCCATCTGCGGCTTGCCGCAGAACAAAAAAATGGGCCGCAAATTTT
TCGCCACAGGCGGGGGAAAAAATTTCGGGTAAGCTCTTCGATTTTGTTTT
AGACAAAAAAAAGCCAGATACGCGTCGTTTTCTGATGCGATTTCGCCACT
TTTTATGCGCTTAACGCCAATGTTTCGCCTCCGGCGGATCCTCCGGGAGC
CCTGCGGGTGTACTCATTGGTCGTGCATGCCGTAGTCGTTAGACCATAGA
CCTCGCATCCGTACAAAGCCGGGANNNNNNNNNNTATCTTGCGTATGGAT
GACAGCCTCGAATGAGCTGCTTTATTATCTGGTGTCGCCACTTCCGGAGT
CAGCCAGGGGGGCGCGTATCGCCTCTGGCGTGATATGCGCGCAGCGCGCA
TCCCGCCGGAAACGTAATGATTTCCCTGCTCACACCGTCGCGCGTTGGTG
CTGCTTCTTACTAACCCTTTCGGTACTATCGTATTATTAATAGTATTCAA
TTACTCTTGTACTCGTATCAGTAGGGCTCTCCGAAACGACCGAGAACCCT
CTTGATGGCAGTCGAAAACTACAGCCTCGCTTCCCATGAGCTCCGTTCTC
TCTCCTTCCTGCTTCGTAACCCATGAGGTTCCCCCGCTCTGCTTCAAGCA
CGCCTCATTACGCGCTAACCAACGCTCCAAGCAGGGGGCTAGTACCTAAA
GGGTCATTATGTTATTTATAGTTAAAGTCAACCCTTTTGGGACTGAGTCC
GTTTTCCGCCCACAATCATGACTACGGGTTCGCGCGTCGACGGAGCCACG
CACAAGTGCAGCACCGTGCATGCAAGCTTTTGGCAGAGTGCAGCTGTGCC
ACCGCCGCTAAGGCGCTAAGGCGACCAGTAGCCGCCGTTCGGTCGATATT
ACTCTGTCAGGTTCGCGTCGACTTGCCCGAAAAACGGACCCAGTCCCAAG
AGGGTTTAGCCCGCATCGGCCAATATCGATGTGGGCTCGCTCCGCGTCGC
TCATTCATGCGAGCCTACACAACTATGCCGACACACTTACTCAATGACAC
CAACCAATGACACCGACGTTCAACACCCCCCGCGCGCGCCCTCACACAAT
TTCACCGGCGATACACGCTCATCTCGCGGCGCAGGTGACCCTCTGCACGG
GAGACAACAATTTCGCCATACGCGCCAGATCAAACGGCCTGAGCACCGAG
AGCCGTCCCCGGTGCGTACCGGGACGTTGCCCAATGCCCCTCTGCCCCGG
TCCACCTCGGCAGTCCCCGTTCGCGCGTAACTCCTACCGATAAAAGGAAC
GGGGGATCTATTGGCGGGGTGGCGTT
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Coding sequence (CDS) from alignment at S-dermatodea_contig11787:112..6237-

>mRNA_S-dermatodea_contig11787.1132.1 ID=mRNA_S-dermatodea_contig11787.1132.1|Name=mRNA_S-dermatodea_contig11787.1132.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1866bp|location=Sequence derived from alignment at S-dermatodea_contig11787:112..6237- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCTCTAGAGTTGAACTCGAAGAAGAAGAGCGCGGCCGAGGAAGGCGA
GGCCGGCAGCCCCGGAAGGGTGTACCTTTCGCTTGATGAGTACAAGGCTG
CGACGGCGGCAGATGGCTCTAGAGTTGAACTCGAAGAAGAAGAGCGCGGC
CGAGGAAGGCGAGGCCGGCAGCCCCGGAAGGGTGTACCTTTCGCTTGATG
AGTACAAGGCTGCGACGGCGGCAGGCGACATGAAGCCTTACAAAGGCACC
AAGTACAAGACCGTGGACGACCGCTACGCTGACGGTTGGGCCTACAACCC
AACCACCAGCCGCTGGCTCAAAGTCGCATGCCAGGAAAAGAAGGCGGCCA
TCGAGGCCCACCCCGCCCTTATCGCGACATGAAGCCTTACAAAGGCACCA
AGTACAAGACCGTGGACGACCGCTACGCTGACGGTTGGGCCTACAACCCA
ACCACCAGCCGCTGGCTCAAAGTCGCATGCCAGGAAAAGAAGGCGGCCAT
CGAGGCCCACCCCGCCCTTATCGCCAGGCTAGAAATGCTGGAGAGCAAGG
TGAAGCTGTCCACCCAGCGGTCCCAGCTACTGGAAACCAAGGCGGAGAAG
ATTCTGATGGACAAGACGACAAGGCCGACAGGCCAGGCTAGAAATGCTGG
AGAGCAAGGTGAAGCTGTCCACCCAGCGGTCCCAGCTACTGGAAACCAAG
GCGGAGAAGATTCTGATGGACAAGACGACAAGGCCGACAGCGACGCTGTC
GACTCCCACGGCTCCCGAGCTGATGGTGTTCGACACAAACTGGCTCATCC
ACGACCTTGGCGACGCCAAGTGCCGTATCGCCGACATCGCCGGCCGCCAC
CCCGACACATCGATTCTCATTCCGAAGGAGGTGCTGAGGGAGCTGGATAG
GCTCAAGACCGGGGGGAAGGATGATGCCACGCGCTACAGCCGACGCTGTC
GACTCCCACGGCTCCCGAGCTGATGGTGTTCGACACAAACTGGCTCATCC
ACGACCTTGGCGACGCCAAGTGCCGTATCGCCGACATCGCCGGCCGCCAC
CCCGACACATCGATTCTCATTCCGAAGGAGGTGCTGAGGGAGCTGGATAG
GCTCAAGACCGGGGGGAAGGATGATGCCACGCGCTACAGCGCGCGTGAAG
CCAATCGGTACCTGCTGTCCCTCCTAGAGAAGCCGCTCGAGGACCGGAGA
GAGTTCCCAGTTGTGCGCGGCCAGGATGACACGGAGCTTTACCGGCGCGT
GAAGCCAATCGGTACCTGCTGTCCCTCCTAGAGAAGCCGCTCGAGGACCG
GAGAGAGTTCCCAGTTGTGCGCGGCCAGGATGACACGGAGCTTTACCGGG
ATGACGGGTACCACGACAGGCCTGGCTATCTCCGCGGCGACGATTCGATC
CTGAACTGCTGCATGTTCTTCAGCCAGGGGATCAAGACACCCCGCAAGGG
ATGACGGGTACCACGACAGGCCTGGCTATCTCCGCGGCGACGATTCGATC
CTGAACTGCTGCATGTTCTTCAGCCAGGGGATCAAGACACCCCGCAAGGT
GACCCTCTGCACGGGAGACAACAATTTCGCCATACGCGCCAGATCAAACG
GCCTGAGCACCGAGAGCCGTCCCCGGTGCGTACCGGGACGTTGCCCAATG
CCCCTCTGCCCCGGTCCACCTCGGCAGTCCCCGTTCGCGCGTAACTCCTA
CCGATAAGTGACCCTCTGCACGGGAGACAACAATTTCGCCATACGCGCCA
GATCAAACGGCCTGAGCACCGAGAGCCGTCCCCGGTGCGTACCGGGACGT
TGCCCAATGCCCCTCTGCCCCGGTCCACCTCGGCAGTCCCCGTTCGCGCG
TAACTCCTACCGATAA
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