mRNA_S-dermatodea_contig10148.111.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10148.111.1
Unique NamemRNA_S-dermatodea_contig10148.111.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10148.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10148contigS-dermatodea_contig10148:3262..6114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_001860.1
Exons2
Model size254
Cds size168
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10148.111.1prot_S-dermatodea_contig10148.111.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10148 3346..6114 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924141.813527-UTR-S-dermatodea_contig10148:3261..33451622924141.813527-UTR-S-dermatodea_contig10148:3261..3345Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10148 3262..3345 +
1694079046.1345937-UTR-S-dermatodea_contig10148:3261..33451694079046.1345937-UTR-S-dermatodea_contig10148:3261..3345Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10148 3262..3345 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924141.823162-CDS-S-dermatodea_contig10148:3345..33791622924141.823162-CDS-S-dermatodea_contig10148:3345..3379Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10148 3346..3379 +
1694079046.1440666-CDS-S-dermatodea_contig10148:3345..33791694079046.1440666-CDS-S-dermatodea_contig10148:3345..3379Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10148 3346..3379 +
1622924141.8339353-CDS-S-dermatodea_contig10148:5980..61141622924141.8339353-CDS-S-dermatodea_contig10148:5980..6114Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10148 5981..6114 +
1694079046.151846-CDS-S-dermatodea_contig10148:5980..61141694079046.151846-CDS-S-dermatodea_contig10148:5980..6114Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10148 5981..6114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10148.111.1

>prot_S-dermatodea_contig10148.111.1 ID=prot_S-dermatodea_contig10148.111.1|Name=mRNA_S-dermatodea_contig10148.111.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=56bp
MKVSAVALACAGCVSGTTAFQPSLFRGGSLQGATGATAADASTSRGIVCR
GAAGGG
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mRNA from alignment at S-dermatodea_contig10148:3262..6114+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10148.111.1 ID=mRNA_S-dermatodea_contig10148.111.1|Name=mRNA_S-dermatodea_contig10148.111.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2853bp|location=Sequence derived from alignment at S-dermatodea_contig10148:3262..6114+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGCTCACGTGAGGCACCGAACAGGACTCTGGCCGGAGACTCAGCTACCG
TGGCGACCCCTCTTTCTGGTATCCCTCCTGAGCGATGAAAGTGTCGGCTG
TGGCATTGGCCTGTGCAGGTGCGAGGGCAAGGAGCGGGCAGACTAGCGGA
CATGCTCGCTCGGGATGAGAGGGTATCCGCGTAATGCACATGCACTTCTT
TGCTGTATCGTACATACAAGTACTGATTGCTGCTGCAGCTGCGTGGACAT
GGCTCGTTTGTGGCGTGATTTTAGCGCCGGAGCTAGGGCCCACTGGGCAA
GATTCTCGTGCACCACCGCAAGCACTGCGCGTGGGTCTCATATCGAACAG
AACAGCAAGGTTCGCGCTCCTGTGTGGCAGAAACGCTTGCGATGTCGAAA
CATGATTCCCAGCGTTTGTCTGGGTTCAACTCACAGGACACCGCTAACAA
ACTCCATGTACTGTAGGGCTCCCGATAACTATAACTATTATGCTGCTGTA
CTGCTGACTCTGTACAAGCAGTATACTGCATGTGTGCATGTAGCGTAATG
GTCAGTACGTTACTTTCCATTCGGACAAGTATATGATAAGAGCTACTACT
CTCTACAAGTGCTTGCAGCTCGCCACTTGTAGTCCTGTATATAGCCGGGT
AGATATAGGTCGGCCGAGAGGGCAAGTGTGCGCGGGCGGGGCCACCAGTC
AGCGCGCCCAGTCATCGCAGTCTTGCTTGAAGCACACGCTAGCTTCGGGT
TATTAGGTGATGGAAGTCTCTGCCATGCAAGTTCTCCCGTTTTGTTCAAT
TGTACCAGACTACCAGGCTATATCATACATACAGCACCCTACACATTACA
TGCATAGTATGTACTGGTATCATAAAATATTACTTGTATTCGTACTTACA
ATAACGTCAACTGAGATGTGCAACAACCTCTCTACAGCAGTACAGCAGTA
CAGAGTAGAGCCCTTCGTAGCTCTGTGTGTGACTACTGCTGTAAATCATA
CCTGACGTGTCAAAGTTGACGAATGAATCTCGTTGGGGGTCCGCGGGGGC
GAAGACGACGACGGGGGGGGAGGGGAGGGGAGGGTGCCGCTTCACCTGTA
AGGCGAGCATATGCGGTGCTTCTGTTTGTGGCGCTGTCAGATTCTTGGTT
GCTGCCGCACGCCATGAATATGTGGTGGTGGCACTCTTTTTACTGTGACA
ATTGATTCTGCGTCCTGCCAGCTGTACGTGTATAGCATTTGACTAAATTG
TCACGGCCCGCAGCGCCGTGGTGTGGTGCATCAAACCTGACGCAGTGTTC
CGCACACTATCTTGGATCTATCGGGACTCTATAGGATAGAGATGACGCGA
CGGCTCACTTCTCTCTTAAGTCGGTGTGCTTGGGGTAATGTGTTGATTGG
TAGGCGGCTCCCTCGAAGATGGCTTCACTATAAATAGCTTAGCTCTTCTC
TCGGCTGTATGCCGATCCACAAGCCGTTAAGCAGAGCACAACCACAAGAC
GCCTTCAAAGGTGTTAGTGGATGTTACTGGATGCCGCGTCTTGCGGCTTC
GTTCGAGACTGTGGCACTCTGGACATGCATGCTGCGGCAAGCGTCGAAGT
GGTATGTCTTACCTCAGCAGCCACGTATTTGCTGATTCGACTAAAATAAA
TGTAAGTGCAGCCGACTTCCAGCAGTGACTTCGTGTGCTGTCACAATTCG
GCGTCTTTCAGGGTGAAAAATGCAGTAAAACGTCTTGATACAAAATGCTA
TCAGTACTATAATACTGTGTTAGAGGGAGTCCCTGCACGCCTACATTGTG
AAGGACAAACCCCGACCAACTCCACAGCATACTCTTATGCCTCTCAGCTT
TTCCAAGTTGCCGTGCCTGAAGAGGACGCAATCTTAGCGCGTGAGTTGTT
ACCTTCGATATCGAACGCACAGCAACACGTTTCGCGAGCATGATCGTGGG
TGCCGAGACGCCCGGCAAGTCGGGCGGAGGCTGCGTCGACGCTCCTCGGA
GTCACAGCTAGCCTTGCACGCATTATCGAAGCGTCGACTTCGCCGCCCGT
GGTGTCTTAGAAACCGTATGCAGCGCCCATATACACTGGCCGCTGCCGAA
AAGTCTTTGCAGCTCGTTGCTGCGCTTGGTGCGGCTTGGAGTTGTGGCAA
GCTCGGAAAGTGTCCCGACGCCCGCCCCCGTCCCCGAAGACTATGATTTT
TTCCAACATGCCGTCCCCGCGGGAGCTGTCTGTCTGTTCTGCCGCCGCTG
TGACTCAGCGATAAGGGCAACTCCGCCCCTAAAAACACAGAGCCGAAAAC
AAAAAAATCGATTGGTTTTCCCGCGCGAGGGACTGCTCCTTGTGTCCCAA
GCGCCACCAAAATTAGCGGCTAATCCTATATTGTTACGCATGCGCTCGAT
CCTGGAGTGCATATTTTTTTCCACGTGCTCTGGGAATGAGCGTTAGGTGG
CGCGCCCGCCACTACTGTCTGTTGTGGCGCCCACGGGCCCAGCGATCATC
ACCGCTTGGCCGTGAACTTCGCCGGTCTCTCATAGGAATACGGTAGACAT
GCCTAAGCGCCCTTGGACAGTAAGTTGCCGCTGAAGGACAGCCCCTTTCA
CGCCTCGCTCTGTCCAGCCCAGCCGAGCCCCGCCCAGCAACGCCCTGATG
CTTGACCATCCCTGCTCTCCACCCCCCCCCGCTTTGCACACCGTCGAAAC
TTGAAACCGCAAACCTCAGGATGCGTCTCTGGCACAACAGCGTTCCAACC
ATCGCTGTTCCGAGGTGGTAGCCTCCAGGGAGCGACAGGCGCGACCGCGG
CCGATGCGTCAACGTCACGAGGCATCGTGTGCAGAGGGGCGGCGGGAGGG
GGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10148:3262..6114+

>mRNA_S-dermatodea_contig10148.111.1 ID=mRNA_S-dermatodea_contig10148.111.1|Name=mRNA_S-dermatodea_contig10148.111.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at S-dermatodea_contig10148:3262..6114+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAAGTGTCGGCTGTGGCATTGGCCTGTGCAGATGAAAGTGTCGGCTG
TGGCATTGGCCTGTGCAGGATGCGTCTCTGGCACAACAGCGTTCCAACCA
TCGCTGTTCCGAGGTGGTAGCCTCCAGGGAGCGACAGGCGCGACCGCGGC
CGATGCGTCAACGTCACGAGGCATCGTGTGCAGAGGGGCGGCGGGAGGGG
GCGATGCGTCTCTGGCACAACAGCGTTCCAACCATCGCTGTTCCGAGGTG
GTAGCCTCCAGGGAGCGACAGGCGCGACCGCGGCCGATGCGTCAACGTCA
CGAGGCATCGTGTGCAGAGGGGCGGCGGGAGGGGGC
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