mRNA_S-dermatodea_contig11708.1091.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11708.1091.1
Unique NamemRNA_S-dermatodea_contig11708.1091.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11708.1091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11708contigS-dermatodea_contig11708:4502..5305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size338
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924214.9686782-CDS-S-dermatodea_contig11708:4501..47071622924214.9686782-CDS-S-dermatodea_contig11708:4501..4707Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11708 4502..4707 -
1694079098.523494-CDS-S-dermatodea_contig11708:4501..47071694079098.523494-CDS-S-dermatodea_contig11708:4501..4707Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11708 4502..4707 -
1622924214.977345-CDS-S-dermatodea_contig11708:5175..53051622924214.977345-CDS-S-dermatodea_contig11708:5175..5305Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11708 5176..5305 -
1694079098.533121-CDS-S-dermatodea_contig11708:5175..53051694079098.533121-CDS-S-dermatodea_contig11708:5175..5305Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11708 5176..5305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11708.1091.1prot_S-dermatodea_contig11708.1091.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11708 4502..5305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11708.1091.1

>prot_S-dermatodea_contig11708.1091.1 ID=prot_S-dermatodea_contig11708.1091.1|Name=mRNA_S-dermatodea_contig11708.1091.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=112bp
SLSLRPSLSLAPGAGWGGGPPEISPMYHQSRLRRIGEPKGPLKGPQPETA
TKMTRRRGTPPLGTLAILAIYLLSLPSGSDAAATAKVGKPRPHRRGSMQE
VDQVAGGGGETA
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mRNA from alignment at S-dermatodea_contig11708:4502..5305-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11708.1091.1 ID=mRNA_S-dermatodea_contig11708.1091.1|Name=mRNA_S-dermatodea_contig11708.1091.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=804bp|location=Sequence derived from alignment at S-dermatodea_contig11708:4502..5305- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCTCTCTCTTTGCGCCCCTCTCTGTCGCTGGCTCCCGGGGCTGGATGGGG
AGGCGGTCCACCAGAAATTTCTCCAATGTATCACCAGTCCCGCTTGAGGA
GGATTGGTGAGCCGAAAGGACCTCTAAAAGGTGATTAATTCGAGAGTACT
TTCCCACCTTTTTGAAGCCCCTGCTCCCTGACGTGAAAAGTACGTTTCTT
TACCGAAGAAGAGAGGTGAGACGCGTGCTTGCTTGGGCAACTTTGGGGGG
TGATAATCTCTCAGGTATGATACTCCTGAAGGCTACTACAGTACGACGCG
TATGGCTTCCTTCCTCGCCTCTCCGTGCGATACCTCGTCCTGCCTATCGA
AGGAACACCGCCCTATCTCAATCTTGAGAGGCAGGCGAGCGGCGGTGTCT
CTGCTGTGGTGGCATCCTTTCTTTGCCACCAGCATATGTTTCCGATTCTG
CATACATATACAAGTGATATATATTGCTGTGTACTCCGTATGATACTCGT
ACTGGTATATCATATGTTTGATATGCATATGGCATAAATACCCGTGTTCC
TTCCCCCCTCTGAACCCCCTTTTTCGCACTCACTCGCTACCTCTCCAGGC
CCTCAACCCGAGACCGCAACAAAAATGACGCGACGGCGAGGGACTCCACC
TCTCGGCACGCTGGCGATTCTAGCAATCTATCTTCTATCGCTCCCCTCCG
GCTCCGACGCAGCAGCAACAGCCAAGGTGGGCAAACCTCGGCCGCACCGA
CGGGGATCTATGCAGGAGGTGGACCAGGTCGCCGGCGGCGGCGGAGAAAC
GGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11708:4502..5305-

>mRNA_S-dermatodea_contig11708.1091.1 ID=mRNA_S-dermatodea_contig11708.1091.1|Name=mRNA_S-dermatodea_contig11708.1091.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at S-dermatodea_contig11708:4502..5305- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCTCTCTCTTTGCGCCCCTCTCTGTCGCTGGCTCCCGGGGCTGGATGGGG
AGGCGGTCCACCAGAAATTTCTCCAATGTATCACCAGTCCCGCTTGAGGA
GGATTGGTGAGCCGAAAGGACCTCTAAAAGTCTCTCTCTTTGCGCCCCTC
TCTGTCGCTGGCTCCCGGGGCTGGATGGGGAGGCGGTCCACCAGAAATTT
CTCCAATGTATCACCAGTCCCGCTTGAGGAGGATTGGTGAGCCGAAAGGA
CCTCTAAAAGGCCCTCAACCCGAGACCGCAACAAAAATGACGCGACGGCG
AGGGACTCCACCTCTCGGCACGCTGGCGATTCTAGCAATCTATCTTCTAT
CGCTCCCCTCCGGCTCCGACGCAGCAGCAACAGCCAAGGTGGGCAAACCT
CGGCCGCACCGACGGGGATCTATGCAGGAGGTGGACCAGGTCGCCGGCGG
CGGCGGAGAAACGGCGGCCCTCAACCCGAGACCGCAACAAAAATGACGCG
ACGGCGAGGGACTCCACCTCTCGGCACGCTGGCGATTCTAGCAATCTATC
TTCTATCGCTCCCCTCCGGCTCCGACGCAGCAGCAACAGCCAAGGTGGGC
AAACCTCGGCCGCACCGACGGGGATCTATGCAGGAGGTGGACCAGGTCGC
CGGCGGCGGCGGAGAAACGGCG
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