mRNA_S-dermatodea_contig11647.1049.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11647.1049.1
Unique NamemRNA_S-dermatodea_contig11647.1049.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig11647.1049.1 vs. uniprot
Match: A0A6H5JPZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPZ0_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 1.140e-64
Identity = 106/136 (77.94%), Postives = 120/136 (88.24%), Query Frame = 1 
Query:    1 PTGAALLRLLASGQPHWYVGQEALPTGECKTVLYIPERSQRRRMAVTCESMSLKLLTGQSRLVEALAGMYMKSMLFVADEGRGEFTVPGAPQAFLPVERALWAAGMRDGDVVTLVDGLPATQATLAKLGTKAHSQC 408
            P+G ALLRLLA+GQPHWYVGQEALPTGE KT+L+IP   ++ R+ VTCE+MSL+LLT QSRLVEALAGMYMKS +F ADEG GE ++PGAPQAFLPVERAL+AAGMRDGDVVTLVDGLPATQ TL  LG KAHS+C
Sbjct:  268 PSGVALLRLLANGQPHWYVGQEALPTGERKTMLFIPASGRQGRVGVTCETMSLQLLTAQSRLVEALAGMYMKSTMFRADEGLGELSLPGAPQAFLPVERALYAAGMRDGDVVTLVDGLPATQDTLGALGDKAHSKC 403
[Close]
BLAST of mRNA_S-dermatodea_contig11647.1049.1 vs. uniprot
Match: D7FJW8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJW8_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 2.950e-46
Identity = 79/105 (75.24%), Postives = 90/105 (85.71%), Query Frame = 1 
Query:   94 VLYIPERSQRRRMAVTCESMSLKLLTGQSRLVEALAGMYMKSMLFVADEGRGEFTVPGAPQAFLPVERALWAAGMRDGDVVTLVDGLPATQATLAKLGTKAHSQC 408
            +L+IP   ++ R+ VTCE+MSL+LLT QSRLVEALAGMYMKS +F ADEG GE ++PGAPQAFLPVERAL+AAGMRDGDVVTLVDGLPATQ TL  LG KAHS C
Sbjct:    1 MLFIPASGRQGRVGVTCETMSLQLLTAQSRLVEALAGMYMKSTMFRADEGLGELSLPGAPQAFLPVERALYAAGMRDGDVVTLVDGLPATQETLGALGDKAHSNC 105
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11647.1049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPZ0_9PHAE1.140e-6477.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJW8_ECTSI2.950e-4675.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11647contigS-dermatodea_contig11647:1182..4362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_000750.1
Exons3
Model size408
Cds size408
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11647.1049.1prot_S-dermatodea_contig11647.1049.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11647 1182..4362 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924212.1989672-CDS-S-dermatodea_contig11647:1181..13131622924212.1989672-CDS-S-dermatodea_contig11647:1181..1313Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11647 1182..1313 -
1694079096.628427-CDS-S-dermatodea_contig11647:1181..13131694079096.628427-CDS-S-dermatodea_contig11647:1181..1313Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11647 1182..1313 -
1622924212.2102785-CDS-S-dermatodea_contig11647:2874..30421622924212.2102785-CDS-S-dermatodea_contig11647:2874..3042Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11647 2875..3042 -
1694079096.6383414-CDS-S-dermatodea_contig11647:2874..30421694079096.6383414-CDS-S-dermatodea_contig11647:2874..3042Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11647 2875..3042 -
1622924212.220372-CDS-S-dermatodea_contig11647:4254..43621622924212.220372-CDS-S-dermatodea_contig11647:4254..4362Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11647 4255..4362 -
1694079096.6491308-CDS-S-dermatodea_contig11647:4254..43621694079096.6491308-CDS-S-dermatodea_contig11647:4254..4362Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11647 4255..4362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11647.1049.1

>prot_S-dermatodea_contig11647.1049.1 ID=prot_S-dermatodea_contig11647.1049.1|Name=mRNA_S-dermatodea_contig11647.1049.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=136bp
PTGAALLRLLASGQPHWYVGQEALPTGECKTVLYIPERSQRRRMAVTCES
MSLKLLTGQSRLVEALAGMYMKSMLFVADEGRGEFTVPGAPQAFLPVERA
LWAAGMRDGDVVTLVDGLPATQATLAKLGTKAHSQC
back to top

mRNA from alignment at S-dermatodea_contig11647:1182..4362-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11647.1049.1 ID=mRNA_S-dermatodea_contig11647.1049.1|Name=mRNA_S-dermatodea_contig11647.1049.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3181bp|location=Sequence derived from alignment at S-dermatodea_contig11647:1182..4362- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCACTGGAGCGGCGCTGCTGAGGCTGCTCGCGTCGGGGCAGCCGCACTG
GTATGTCGGTCAGGAAGCGTTGCCTACGGGAGAGTGCAAGACTGTGCTCT
ACATCCCGGTGAGAAGCGGGTTTTCGCGTTTCGGAGGAAGGCGTTTCTTT
TCTTTTATATCCCTTTTTTTTGGGGGGGGGGGGGGTTGAGCATAGCATTT
TTTTGGGGGGGGGGGTGAGCCTCCATAGGTGTAGCTTGGACCATCTTCCC
TCTTGAAAAGGTGGGACCCCAACGCTCGCTCTTTGTTTTTTTTTGTTTTT
TTTAGGGGGAGGTGATGATTGCCACCGCCGGGTGTATGTTTTTTGCTGTG
GCGGCTGGCGCGCATGCACACGAGCCGCGGTGCATGCAAACTAAGACTAA
GAGCGTGGGAGGGTTTTCCTTTTCCAAAGCCATTACGGCGATCAGTAGAG
CTAGCCACCGTTCGGGTACTGCTGTACCTGTTCGATGTCGCCCGAAAATC
GAACTCGGTCCGAAAAAGGTTCAATTCACGAGAGGGTCTCGTGGTGTTGT
TGCTGTTGTTTTTTTTTTTTTTTTTTTTTTGCACACACTTGATGGACCGA
CCGACTTTTCCGAGGTCTCATCTGTGGTCACAAAGGATGATCCCATCTCT
CCTATGCACGGTTTTTTTGGGACTAAGGCTGTTTTCGGCTAAGTGTTTGC
TATTATTATACGAAGTATACCTTTTTGTTTCCGGACTAAGCCTGTATTCG
GGTAACTGCTTGCTATTATTATGTACCCTCTTGTTTCGGGACTAAGGCTG
TTTTCGGGTAACCGTTTGCTATTATGGTAGCCAACAGTTACCCGAAAACA
GGCATCATCCCCAGGCTTAGTCCCAAAAGGGAATTATAACAATAGCAAAC
AGTTACCCGAAAACAGCTTTAGTCCCTAAAGGGTTAACCTTTTTATCGCG
CACTGGTTTCGGCACTCCCGCAGCTTGCCGATTTCTCGGATTCTGCGTAC
TCACGCACTCACGCTGTCGCGCTTTCCGCATGACGATCCCCCCATGGCAT
ATCGGTTGGCGTCGCAAACGCAAGGATGATGGCTAGCAGCTGGTATCATA
CCATCCGTGTGCAACGCAGCCTGCCCGGCGAAAACCCGGCAAATCGCCCC
GTCCCGGCATTATTTGTTTCGCGCGGTCTGTCTCCGCCTGGATACCACGT
GCATCTAACGTAGGTACCCCCCCCCCCCCCCCCCCGACCGACCGGCATTC
TTGATTCGATGCTTTACCGCTGCTCCGACTGCCGCTGGCGACGCCGCGCT
ATCGATCTCGATCGCGAAAGGAGCGATCACAACGGCGGCGCATGGCGGTG
ACGTGCGAGAGCATGTCTCTAAAGCTCCTGACGGGGCAGTCGAGGCTGGT
GGAAGCTCTGGCGGGCATGTACATGAAGAGCATGCTCTTCGTGGCGGACG
AGGGGCGCGGGGAGTTCACCGTCCCGGGCGCTCCGCAGGTATGGAAGGCG
TTTTTTTCTCTTGCAGGAATGTGTGTTACTTTTCTTTTTTTTTCCACACT
TTTTTGTTTTTTTGACGGGACCGTATTTTTTTCTGAGGTCCGTCTGTGGT
CACAAAGGATCAATCATCCCATATCTCTTATCGTATCCCCGGTAGTTCTT
AGTTTCCTTACTAATACCGGTAGGTTTTTATCGCGAATGCATTGGGTCCG
GTTCGGCACTCCCGCAGCTCGCCGATTTCTCGGATATTTACTGGGTTCAG
AGTAACTTAGAGTCAATGAATCCGTCGGCCAGTAACATAAACATTGATAC
CGGCCAGTAATCTGAGACCCGATAGGGCCCTGGGGGAAAAAGCCTCCATA
TTGTCTTGTTTTTTTGTTTTGATTTTGGTGTGCCGACGTCGATCAGTCAC
GTGACCAAAGCCTGATTTAGGTGGCAGAATAGTCATTTTTTATCTTTTAG
GAATGGCAAACTCTTCTAGCCCCCCACCCCCCGAGGTGGTGTGCTTTTGC
CTTGTTTTTTGTGGCGTTTTCTTAAGGCAAGCAGGCTCTTTTGCAATTAC
CCAAGTTTTTTTTCCGTTTTCTGTTTGTCGATTTTCTGTGTAGAAGTGGG
TTTGATATTTATTTTTTCTTCACAGGTTCTACAATCATAGGTTTTGCCGC
GGTTTTTGCAGCGGCGCCTACATTGTTGTGTAGATAAAGAGGCGTGTTTT
TGTTTTCGCAATTTGTCTTTTCGCGATGTCCTTGTACAACTGTTTTGACG
GCCAGGGTTCTTCTTTCTCTCTTCGGAGTCACGATAATTTGTTTTCTACC
GTTTTGGTTGTAGAGGCGACCAGGCGTTTTTATCAACGCAGTTTTTTCCC
TTTCTGCACCATTTTGTGTTGTTGACCACCAGGCGTTGTCTTGAAAGAGG
AACACGCTTCATCATCTATTTACAGGGGCACACAGCAATGGCAGTATATT
AGTACTGTAATCAGGACCAATAATAATCCTGCTCTTTTGGCCTCAAAATC
GTACAGAAAATAGTATGGAAAATCGGCCTAAAAAAATCGGCCTCAAAATC
GTATAGGAAATAGGATGGAAAAAAGGTTCAAAGGGTGTTATTTTAATTAT
AATTATTAAATATTTGCGATTGTTATAGTAATAAGTGAGGACACGGTGGT
CCCACCAAGTTGAGTGCACCCAACAAAACGATCTATGATTTCAATCTGGC
CTTACAACATGACCGACCATCTGCAGTCAGTCTTCCATCTTTCAGAGCCC
GAAATGCCGATAAACCTTCAAGCAAAAACGATTATTAGTACAAGCTGTTG
GGGCCGGCGTTTAGAAAACAAAGCTTTTATCATACAGTACTTGTACACGT
CATCGAGCAGAAATCTGTTCCTGATTACAGCACCTCCGTAAATGTCATAT
TATACAAAAGTCTTTTTACCTCGCGTTCTGGTCGGAGCAACCCGCGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTTTTTTTTTTTTTTTCTTA
ACAAACGTTATATTTATGTTTTTTGACGCGTTTTTGTGTTGACGTGCAGG
CGTTTTTGCCGGTGGAGCGTGCGCTGTGGGCGGCGGGGATGAGAGACGGC
GACGTCGTCACGCTTGTCGACGGGCTGCCGGCTACCCAGGCAACGCTCGC
AAAGCTTGGGACGAAGGCGCACTCGCAATGC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11647:1182..4362-

>mRNA_S-dermatodea_contig11647.1049.1 ID=mRNA_S-dermatodea_contig11647.1049.1|Name=mRNA_S-dermatodea_contig11647.1049.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at S-dermatodea_contig11647:1182..4362- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCACTGGAGCGGCGCTGCTGAGGCTGCTCGCGTCGGGGCAGCCGCACTG
GTATGTCGGTCAGGAAGCGTTGCCTACGGGAGAGTGCAAGACTGTGCTCT
ACATCCCGCCCACTGGAGCGGCGCTGCTGAGGCTGCTCGCGTCGGGGCAG
CCGCACTGGTATGTCGGTCAGGAAGCGTTGCCTACGGGAGAGTGCAAGAC
TGTGCTCTACATCCCGGAGCGATCACAACGGCGGCGCATGGCGGTGACGT
GCGAGAGCATGTCTCTAAAGCTCCTGACGGGGCAGTCGAGGCTGGTGGAA
GCTCTGGCGGGCATGTACATGAAGAGCATGCTCTTCGTGGCGGACGAGGG
GCGCGGGGAGTTCACCGTCCCGGGCGCTCCGCAGGAGCGATCACAACGGC
GGCGCATGGCGGTGACGTGCGAGAGCATGTCTCTAAAGCTCCTGACGGGG
CAGTCGAGGCTGGTGGAAGCTCTGGCGGGCATGTACATGAAGAGCATGCT
CTTCGTGGCGGACGAGGGGCGCGGGGAGTTCACCGTCCCGGGCGCTCCGC
AGGCGTTTTTGCCGGTGGAGCGTGCGCTGTGGGCGGCGGGGATGAGAGAC
GGCGACGTCGTCACGCTTGTCGACGGGCTGCCGGCTACCCAGGCAACGCT
CGCAAAGCTTGGGACGAAGGCGCACTCGCAATGCGCGTTTTTGCCGGTGG
AGCGTGCGCTGTGGGCGGCGGGGATGAGAGACGGCGACGTCGTCACGCTT
GTCGACGGGCTGCCGGCTACCCAGGCAACGCTCGCAAAGCTTGGGACGAA
GGCGCACTCGCAATGC
back to top