mRNA_S-dermatodea_contig11640.1044.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11640.1044.1
Unique NamemRNA_S-dermatodea_contig11640.1044.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11640.1044.1 vs. uniprot
Match: D8LDU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU5_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 2.990e-19
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:  130 AEECSREALDPAKRHELDLYDKDVFIDRTCSERSIDPVNHCNMFDIGQNCRGCFTTCTGAIRYMNDFRGEYEVVG-DDLFKFCPEAEVDFFGEC 408
            AEEC   +L  A + +L +YDKD++++  C   +     HCN   +GQ CRGCF TC GA RY++DF  E  V G D +  FCP+AEV+   EC
Sbjct:   22 AEECIVSSLSDAAQEQLSMYDKDLYLEPDCVNGASPMPVHCNYMGLGQECRGCFMTCDGATRYLDDFAEEISVWGVDAIVHFCPDAEVELLEEC 115
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BLAST of mRNA_S-dermatodea_contig11640.1044.1 vs. uniprot
Match: D8LDU6_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU6_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 6.130e-12
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:  130 AEECSREALDPAKRHELDLYDKDVFIDRTCSERSIDPVNHCNMFDIGQNCRGCFTTCTGAIRYMNDFRGEYEVVGDD-LFKFCPEAEVDFFGEC 408
            A  CS ++L+ A + +L LYD D++++  C   S      CN   +GQ CRGCF TC GA+ Y++D        G+D +  FCP++EV    EC
Sbjct:  581 APSCSMDSLNDADQQQLALYDNDMYLEDDCVNDSTPLPLGCNYMGLGQECRGCFLTCAGALTYIDDKAEHILEYGEDAVINFCPQSEVSDLAEC 674
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11640.1044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDU5_ECTSI2.990e-1944.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LDU6_ECTSI6.130e-1238.30N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11640contigS-dermatodea_contig11640:356..4642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size893
Cds size891
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11640.1044.1prot_S-dermatodea_contig11640.1044.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11640 358..4642 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924211.854195-CDS-S-dermatodea_contig11640:357..8971622924211.854195-CDS-S-dermatodea_contig11640:357..897Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11640 358..897 -
1694079096.391214-CDS-S-dermatodea_contig11640:357..8971694079096.391214-CDS-S-dermatodea_contig11640:357..897Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11640 358..897 -
1622924211.8627303-CDS-S-dermatodea_contig11640:2333..25661622924211.8627303-CDS-S-dermatodea_contig11640:2333..2566Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11640 2334..2566 -
1694079096.3992238-CDS-S-dermatodea_contig11640:2333..25661694079096.3992238-CDS-S-dermatodea_contig11640:2333..2566Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11640 2334..2566 -
1622924211.8706393-CDS-S-dermatodea_contig11640:4524..46421622924211.8706393-CDS-S-dermatodea_contig11640:4524..4642Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11640 4525..4642 -
1694079096.4068465-CDS-S-dermatodea_contig11640:4524..46421694079096.4068465-CDS-S-dermatodea_contig11640:4524..4642Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11640 4525..4642 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11640.1044.1

>prot_S-dermatodea_contig11640.1044.1 ID=prot_S-dermatodea_contig11640.1044.1|Name=mRNA_S-dermatodea_contig11640.1044.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=297bp
THILPPSDPVPSPAVGQLGLSCTMRTAQSLVWLALLSRAAAQNAEECSRE
ALDPAKRHELDLYDKDVFIDRTCSERSIDPVNHCNMFDIGQNCRGCFTTC
TGAIRYMNDFRGEYEVVGDDLFKFCPEAEVDFFGECEGSAPTTPAPTTIV
ISALPDSGFSDDNGEDFSYPFADSEDEEDVLPVPGPAPASADAPVYVPDV
APVRDEEEPESMSYSFYFDEDFMAPSPVPAPTEDVSPKPTAPVRAPAAHP
MAAPPTSGDGMPPARPPAAAPTEDVSPKPSAPVASPVAAPAKAPVAA
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mRNA from alignment at S-dermatodea_contig11640:356..4642-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11640.1044.1 ID=mRNA_S-dermatodea_contig11640.1044.1|Name=mRNA_S-dermatodea_contig11640.1044.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4287bp|location=Sequence derived from alignment at S-dermatodea_contig11640:356..4642- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACACACATCCTGCCTCCCAGCGACCCCGTCCCATCTCCAGCTGTCGGGCA
ACTGGGGCTGAGTTGCACCATGAGAACCGCCCAAAGCCTGGTATGGTTGG
CGCTTCTGTCGAGGGCAGGTGAGCCGCGGGTAGCACCGGCGTTTGCAGAG
TTCTGCTTCTAGCGCTCGAAGCGCGTGTGTGTGCAAAATACATTCAGGTG
ATCGTTCACGTATCATTGTCGTATGTACTATATTAGTACGTGAGACTATA
TGTATGATGAATGGTCCGCTCAAACCTCTGCTGCTCTTGCTGATGCACGC
GCGGGGTGGGAATGTATCGTGCGTGGCATGCCGCCAGAAGCAGAGCACCC
GAGCCGTAATAAAAGAGGGAAGAGCACTTGCGCTGCTGTTTTGCTGCTCT
TCGCCCTACTGGCTTTGCCTGCGTGTGTGTGTGTGTTGCCTGTCATTCTG
CAGAGGACCGCGCCTTTGATCGTTTCTCATCCGGTATATATGTGTTAATA
TATATAGAAAAAAGAACAGAGCGGATATTCCGCACGTCAGGGCTCCAACC
CGTTGAGACAGCGCCTTTGGATCTATCGATCGCCTTTGCCCCTCAGAGCC
GCCCCGCCCTAGGCAAACTTCGAGGGCCGCAGAGGAGCTGCGTGTCCCGC
TGTTGATGAGATCGTGAGCGCGTTGCCTTGCCCGCCGCAGGCGCACGTGG
TATCGCCGTGCGGGCATGTCGAAAATAATTCGTGTTTTTTTTGTATGTTG
ATTGTTTTGGATTTCTGCGCGCAGAGTATTTTGGCTCTACATACATAAAT
ACACACAACACTCTATATGTCTATATGTACACAACTGGTACAAGGCTTCA
CACGAACATAGTAGTACTGCTGTTTTATGAGCGGTAAAAAACTTTTACTC
TCCGTAGAGCGCTATGTGAGAGTTCGTTCATCATCATCATACAAGCGCAT
GATAGCATTGTACATCACACATGCCCGTGGAGGCGCCTCTTCAGTGGCGG
CGCAGTGAGTTTGCGGAGTCCGTAGTAAGGATGGATGTTGAGAATACGAT
AGATACCTGTGGGTTGGTTGCAGGAAACGGAAACAAACGCTTCACAGCAG
TTCTCCCGCCGCGCAGCTTTTTCGCAACTCTTGGTTTCTCCGTATGAAGC
TGCGAGCGACAACAGCATATTTCTATGTAGGCATCGCGCGTGCGGGCGCA
GGGAAGGCGAGGGGGTTGCTGTTGTTTGCTGAGGGCACAGCGAGCAGCAC
AGAGCTCAGTAGCGAACCGTGCTCTTCTGGAGATGAGACACACACCTAGG
GGGTGCTGACAAAATGTACTCTGTAAATACCAAAATCTGCATCTTGTTGC
CGCTCAAAGCTGCTGCAAAAGTTGCGGTCGGCCCCCTTTTTATATCTTGT
CTGCAGAGTGCGTGATCATCACGATGGGTTAAGTCATGGGTGCCACTGGG
TCGCCACAGCAGTGTGGCCGTCCACACCACAACCCTTCCGTGTGTTTTCG
TAAACGTGAACGAATTAGCGCGCGCGGTGCGAGCCGTGCGTCCACCGTTT
GCTCTTTTCGCTCTCCTCGCTCGAGGACGAACAACCATGAAGGGGGTGTC
TAGAAAGTTGCTCCCCCATGATGGTGCTGCTGGTGTGTAAAACGAGAACT
ATAGTATATCGGCATTATATTTTTTATGTTGTTGTAAAAAGTAGGATTAT
ATTTATTATTACAGTAGAAGGAAGTCGGGATTTGTTTTGGATATGCACAT
CAATCAACATTGAAAAAAGCTCTTCGTCATGGCCAAGACAAAGCCACCAA
CCAGTACGTCAGGATCTCCCCAAAATGACAATACAAACGATCGATATATA
TATACAGTACAGTATATATACAGCAGTAGTATCGATTATATCATCCCGAT
ATCATACAAAAAATATTATACTGTACACACCTGACGCACATCAACGAGAG
TAAGTATCATACCTGGACGGAGAATTATGTACATACACAGCGCACGGACA
TCTATCTAACGCGCCCAACAGCTCACTCTTCTCTCCTTTCTCCCCGTGTT
ATTGATTCTTTTGTATTTTGGTGCAGCGGCGCAAAATGCGGAAGAATGCT
CGAGGGAGGCGCTTGACCCCGCGAAGCGGCATGAGCTCGACCTCTACGAC
AAGGACGTGTTTATCGACCGAACTTGCTCGGAGCGCTCCATCGACCCTGT
AAACCACTGCAACATGTTCGACATAGGGCAAAACTGCAGGGGGTGCTTCA
CCACTTGCACGGGCGCCATCCGGTACATGAACGACTTCCGGGGAGAGTAC
GAGGTCGTGGTGAGTTAGAAGAGCTGATTCAGTTTACTATTGTATATCGA
TATATAGTATCATACTACATTATACTATAATGATGTAAATTACCGGTGGT
AGCCAGAAAAACGGTACTGTACCTGGTAACGGTATAACGGGGTATTTTTT
ATACTATCAATATCCTACAGCTGTATATATATATTTACAGGTGAATATCA
TATCAAATCATACGATGTTCATTTACTATTTATTTTATTTTGTCGGTTCC
ACGGCAGCAGCTGCTGCAGAAACGGCTGCGGCAGGTAATCGATATATATG
TGCTGCTGCTGCTGCTTTTTTTTGTGCGCGCACTCTAGCGCGTAGCGGAT
AACAAGATCTACTGCTTTGAGATGGGTCTGTGTCTTCACATATACCTGGT
ATCTAACACGTTCCTCCACGCGCATTATTTCCGCGGGGAAATGCCCCCCT
CCGATCTACAGCAGCAGTAGGATATCGTATAATACAAACAAGTGAATAGC
GCGGGTTTTTTTTACGCAATCAAACTCCCCAACTCTTGCACCAGGGCACT
CTCTCCCTGATACTCTATACCCCCCACACAGCGCGCCATTCCAGACGATG
CGTTCGATGTTGCGCAACACAACATGTAGGGCCGCCAGTGCTCTATTAAT
AGGTAAATGCGCGGCATGTGCTGCAGGCTGTTATTTATGTCGCGATGATA
TCATAAACGACGTCAGCAGCGTATTTATTGATTGATTTGATTTGCAAACT
TGAAGCCGATCGGCTTAATCCGACCTGTGATGGTGTATAACAGTACATTG
ATTGCATTAAACTGTACAGCAGTAATTGCACCAAGGTGGCGGAGACGTTC
GAGGCCATTGCGGTTTCATAGATGTATTGTTGTGTAACTGTTATAGTGAT
TATAGTGGGTAGCCACAGCTACGCCTGTGTGAGGTGTGCGTTGGCAGGAC
GGCTTCATATGCCGACGGAACGCGACACGGAGGTCGAACGCGGTCGAGCT
ATGCCCTGTTGAGCGTGTCGCTGTTGTGCGTATCATTGTTTCCGTGTTTT
CGTTTTATATTTTTTAATAAATTAACAACAACTTGTTTGGTATCAGACAG
CATCCTTGTCTAAAATCCATGTACACAATCGGTCAATGTTGCCTCAACCG
AACAAGATATCGTACAACAGTTAGTATCATATACACCGAGAAGTAGATTT
CGTTTTTTTGTAATGAAAATAAGGAAGGAAAGGACTTCACTCCTGTGCCT
TTTACCCGCCGTTAAAAACGCGCACGGATCCGTACCGTCTCTGCTCGGCC
CCATCGTGCTTCTCTGTATACATCCGCACTATGTATTATTGCTCACAGGC
TATTAATAACCCCCGTCCCACCATTCCTTACAGTGTAAGTATAGACTATT
AATAACAACCCCCGTCCCACCATTCCCCTCTCTTACGCATACCAGGGTGA
CGACCTGTTCAAATTCTGCCCGGAAGCTGAGGTCGATTTCTTCGGAGAGT
GCGAAGGCTCGGCCCCGACCACTCCTGCCCCAACCACGATCGTGATCAGC
GCTCTCCCCGACAGTGGCTTCTCCGATGACAACGGTGAAGACTTTTCCTA
CCCGTTCGCGGACTCGGAAGATGAAGAAGATGTCCTCCCCGTGCCCGGAC
CCGCGCCGGCGTCGGCGGACGCCCCAGTGTACGTGCCCGACGTCGCGCCT
GTGAGGGATGAGGAGGAGCCCGAGTCAATGTCGTACTCGTTCTACTTCGA
CGAAGATTTCATGGCCCCATCGCCCGTGCCCGCGCCGACGGAAGACGTGT
CGCCCAAACCCACGGCTCCGGTGAGGGCTCCGGCCGCCCACCCCATGGCG
GCCCCTCCGACATCTGGCGACGGGATGCCTCCTGCGAGGCCTCCTGCGGC
CGCGCCTACGGAAGACGTGTCGCCCAAACCCTCGGCTCCAGTGGCGTCTC
CGGTCGCGGCTCCCGCGAAGGCTCCGGTCGCGGCTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11640:356..4642-

>mRNA_S-dermatodea_contig11640.1044.1 ID=mRNA_S-dermatodea_contig11640.1044.1|Name=mRNA_S-dermatodea_contig11640.1044.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1782bp|location=Sequence derived from alignment at S-dermatodea_contig11640:356..4642- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACACACATCCTGCCTCCCAGCGACCCCGTCCCATCTCCAGCTGTCGGGCA
ACTGGGGCTGAGTTGCACCATGAGAACCGCCCAAAGCCTGGTATGGTTGG
CGCTTCTGTCGAGGGCAGACACACATCCTGCCTCCCAGCGACCCCGTCCC
ATCTCCAGCTGTCGGGCAACTGGGGCTGAGTTGCACCATGAGAACCGCCC
AAAGCCTGGTATGGTTGGCGCTTCTGTCGAGGGCAGCGGCGCAAAATGCG
GAAGAATGCTCGAGGGAGGCGCTTGACCCCGCGAAGCGGCATGAGCTCGA
CCTCTACGACAAGGACGTGTTTATCGACCGAACTTGCTCGGAGCGCTCCA
TCGACCCTGTAAACCACTGCAACATGTTCGACATAGGGCAAAACTGCAGG
GGGTGCTTCACCACTTGCACGGGCGCCATCCGGTACATGAACGACTTCCG
GGGAGAGTACGAGGTCGTGCGGCGCAAAATGCGGAAGAATGCTCGAGGGA
GGCGCTTGACCCCGCGAAGCGGCATGAGCTCGACCTCTACGACAAGGACG
TGTTTATCGACCGAACTTGCTCGGAGCGCTCCATCGACCCTGTAAACCAC
TGCAACATGTTCGACATAGGGCAAAACTGCAGGGGGTGCTTCACCACTTG
CACGGGCGCCATCCGGTACATGAACGACTTCCGGGGAGAGTACGAGGTCG
TGGGTGACGACCTGTTCAAATTCTGCCCGGAAGCTGAGGTCGATTTCTTC
GGAGAGTGCGAAGGCTCGGCCCCGACCACTCCTGCCCCAACCACGATCGT
GATCAGCGCTCTCCCCGACAGTGGCTTCTCCGATGACAACGGTGAAGACT
TTTCCTACCCGTTCGCGGACTCGGAAGATGAAGAAGATGTCCTCCCCGTG
CCCGGACCCGCGCCGGCGTCGGCGGACGCCCCAGTGTACGTGCCCGACGT
CGCGCCTGTGAGGGATGAGGAGGAGCCCGAGTCAATGTCGTACTCGTTCT
ACTTCGACGAAGATTTCATGGCCCCATCGCCCGTGCCCGCGCCGACGGAA
GACGTGTCGCCCAAACCCACGGCTCCGGTGAGGGCTCCGGCCGCCCACCC
CATGGCGGCCCCTCCGACATCTGGCGACGGGATGCCTCCTGCGAGGCCTC
CTGCGGCCGCGCCTACGGAAGACGTGTCGCCCAAACCCTCGGCTCCAGTG
GCGTCTCCGGTCGCGGCTCCCGCGAAGGCTCCGGTCGCGGCTGGTGACGA
CCTGTTCAAATTCTGCCCGGAAGCTGAGGTCGATTTCTTCGGAGAGTGCG
AAGGCTCGGCCCCGACCACTCCTGCCCCAACCACGATCGTGATCAGCGCT
CTCCCCGACAGTGGCTTCTCCGATGACAACGGTGAAGACTTTTCCTACCC
GTTCGCGGACTCGGAAGATGAAGAAGATGTCCTCCCCGTGCCCGGACCCG
CGCCGGCGTCGGCGGACGCCCCAGTGTACGTGCCCGACGTCGCGCCTGTG
AGGGATGAGGAGGAGCCCGAGTCAATGTCGTACTCGTTCTACTTCGACGA
AGATTTCATGGCCCCATCGCCCGTGCCCGCGCCGACGGAAGACGTGTCGC
CCAAACCCACGGCTCCGGTGAGGGCTCCGGCCGCCCACCCCATGGCGGCC
CCTCCGACATCTGGCGACGGGATGCCTCCTGCGAGGCCTCCTGCGGCCGC
GCCTACGGAAGACGTGTCGCCCAAACCCTCGGCTCCAGTGGCGTCTCCGG
TCGCGGCTCCCGCGAAGGCTCCGGTCGCGGCT
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