mRNA_S-dermatodea_contig11599.1015.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11599.1015.1
Unique NamemRNA_S-dermatodea_contig11599.1015.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11599.1015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11599contigS-dermatodea_contig11599:2059..3043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue1.8e-09
Seed eggNOG ortholog2880.D8LTB3
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG0265@1,KOG1320@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptiontrypsin-like serine protease
Ec32 orthologEc-12_005910.1
Exons2
Model size272
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924209.8237906-CDS-S-dermatodea_contig11599:2059..21861622924209.8237906-CDS-S-dermatodea_contig11599:2059..2186Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11599 2060..2186 -
1694079094.89675-CDS-S-dermatodea_contig11599:2059..21861694079094.89675-CDS-S-dermatodea_contig11599:2059..2186Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11599 2060..2186 -
1622924209.8396282-CDS-S-dermatodea_contig11599:2900..30431622924209.8396282-CDS-S-dermatodea_contig11599:2900..3043Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11599 2901..3043 -
1694079094.909118-CDS-S-dermatodea_contig11599:2900..30431694079094.909118-CDS-S-dermatodea_contig11599:2900..3043Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11599 2901..3043 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11599.1015.1prot_S-dermatodea_contig11599.1015.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11599 2060..3043 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11599.1015.1

>prot_S-dermatodea_contig11599.1015.1 ID=prot_S-dermatodea_contig11599.1015.1|Name=mRNA_S-dermatodea_contig11599.1015.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=90bp
FGRPARFFERKVDACRSFIIGRERVHWVALGMAVYIASTSIVPRLGSGSS
ARTENSNFRGEEESALSPGYHSGEESQPYGSARARRGGHR
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mRNA from alignment at S-dermatodea_contig11599:2059..3043-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11599.1015.1 ID=mRNA_S-dermatodea_contig11599.1015.1|Name=mRNA_S-dermatodea_contig11599.1015.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=985bp|location=Sequence derived from alignment at S-dermatodea_contig11599:2059..3043- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCGGGAGGCCGGCGCGGTTCTTTGAGCGGAAGGTGGACGCGTGCAGGTC
GTTTATCATCGGTCGCGAGCGTGTTCACTGGGTAGCTCTGGGGATGGCCG
TCTACATCGCATCAACGTCGATCGTGCCGCGTCTGGGAAGTGGGTGGGTT
TTCATGTTAAACTAAAGAAACTTTTCATCGTCATCGGCACTTTTAAAAGC
GTCGTGAAATGCGCTGTGGACTGAATGAGGCGCTCGTGCAACCTGAAATT
AAGTACATGGCCGCGGTCATTTCGTATGTAACAGCTTGTAGATGCGTGTA
CCAGTTTTTCTGTGCCTTCCTTTCTCGCTTGCAAATCATGTGCGGCACGC
GACTCCGCACCGCTTCTGTAGCTGCCTGTCGGTCGGGTCAGGGGTTCCTC
AGCATCCGCAGGACGTCGGTGTCCATTTCTTTCCCTGTCTCGTGGTGTCT
CGCGAGTTTTTGAGTCCATTCTCGACGGCTTCCTTACAGTAGCGTTGGGC
GTTGTGTGACGGTGCCTCAAGGGGGGACATCCGCGCTGCTTCAACAGCGC
GCAACACGCCACGTACCCGCGCAGCCCCAGCGGGGACAAGGGGGCAGCAC
CAGTACATACTAGTGGAACAAAGAGAAAGACACCATTCACAGCGCAGACT
TTAAGCCTCTTGCGAAAATCTGCTTGGTATCGATCCTCAAACCACATTCG
TCTACAGAAAGTGCTTCCTTAAAGATCCGGCAAGGTTAGGAGTTCAGGGC
AGATACCCAACATATAATAGCCTTCGTGTCCCGCCCCCGCTCCCCCTACC
TCTCGCCTCACGCTCCCCTCGCCTCCTCATCATCCCCGTTTTCTGCTTCC
CCTCAAGGTCTTCGGCCCGTACGGAAAACAGCAACTTCCGGGGAGAAGAA
GAATCGGCGCTGTCACCGGGGTATCATAGCGGCGAAGAATCCCAACCCTA
CGGCTCGGCGCGCGCCCGGCGAGGTGGCCACCGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11599:2059..3043-

>mRNA_S-dermatodea_contig11599.1015.1 ID=mRNA_S-dermatodea_contig11599.1015.1|Name=mRNA_S-dermatodea_contig11599.1015.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at S-dermatodea_contig11599:2059..3043- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCGGGAGGCCGGCGCGGTTCTTTGAGCGGAAGGTGGACGCGTGCAGGTC
GTTTATCATCGGTCGCGAGCGTGTTCACTGGGTAGCTCTGGGGATGGCCG
TCTACATCGCATCAACGTCGATCGTGCCGCGTCTGGGAAGTGGTTCGGGA
GGCCGGCGCGGTTCTTTGAGCGGAAGGTGGACGCGTGCAGGTCGTTTATC
ATCGGTCGCGAGCGTGTTCACTGGGTAGCTCTGGGGATGGCCGTCTACAT
CGCATCAACGTCGATCGTGCCGCGTCTGGGAAGTGGGTCTTCGGCCCGTA
CGGAAAACAGCAACTTCCGGGGAGAAGAAGAATCGGCGCTGTCACCGGGG
TATCATAGCGGCGAAGAATCCCAACCCTACGGCTCGGCGCGCGCCCGGCG
AGGTGGCCACCGGGTCTTCGGCCCGTACGGAAAACAGCAACTTCCGGGGA
GAAGAAGAATCGGCGCTGTCACCGGGGTATCATAGCGGCGAAGAATCCCA
ACCCTACGGCTCGGCGCGCGCCCGGCGAGGTGGCCACCGG
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