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Homology
BLAST of mRNA_S-dermatodea_contig1153.985.1 vs. uniprot
Match: D7FMX6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMX6_ECTSI) HSP 1 Score: 65.5 bits (158), Expect = 2.230e-7 Identity = 35/53 (66.04%), Postives = 38/53 (71.70%), Query Frame = 0
Query: 110 RQTRAARAKLMQTFKSLGRSGLWMEALTQAQAARGRGVVFDVYTYSALISAVA 162
RQ R+KL+QT KS GR G W EALT A AR GVVFDVYTYS L+SAVA
Sbjct: 28 RQRNRRRSKLIQTLKSQGRKGQWKEALTAANLAREDGVVFDVYTYSVLMSAVA 80
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 150..198
e-value: 1.5E-8
score: 34.7 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13812 | PPR_3 | coord: 488..547
e-value: 1.3E-11
score: 44.4
coord: 419..478
e-value: 5.2E-8
score: 32.9 |
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 432..466
e-value: 1.2E-5
score: 23.1
coord: 258..291
e-value: 3.9E-7
score: 27.8
coord: 502..535
e-value: 1.4E-7
score: 29.2
coord: 468..501
e-value: 8.9E-6
score: 23.6
coord: 222..256
e-value: 2.1E-4
score: 19.3
coord: 398..430
e-value: 9.5E-5
score: 20.3
coord: 362..396
e-value: 7.7E-6
score: 23.8
coord: 590..616
e-value: 2.1E-4
score: 19.3
coord: 152..185
e-value: 1.8E-8
score: 32.1
coord: 328..361
e-value: 1.4E-7
score: 29.2
coord: 292..326
e-value: 3.7E-7
score: 27.9
coord: 189..221
e-value: 4.8E-6
score: 24.4
coord: 537..563
e-value: 1.7E-5
score: 22.7 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 222..251
e-value: 0.021
score: 15.0
coord: 590..616
e-value: 0.0038
score: 17.4 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 290..324
score: 12.101 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 325..359
score: 12.945 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 395..429
score: 9.24 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 465..499
score: 10.413 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 500..534
score: 12.233 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 185..219
score: 11.203 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 150..184
score: 13.428 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 255..289
score: 11.882 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 588..618
score: 9.087 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 535..565
score: 8.572 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 360..394
score: 11.148 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 430..464
score: 10.665 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 220..254
score: 10.479 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 285..376
e-value: 8.4E-30
score: 105.4
coord: 402..511
e-value: 1.0E-29
score: 105.2
coord: 512..629
e-value: 1.2E-19
score: 72.3 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 116..284
e-value: 3.3E-47
score: 163.3 |
| IPR033443 | Pentacotripeptide-repeat region of PRORP | PFAM | PF17177 | PPR_long | coord: 258..402
e-value: 8.8E-15
score: 54.6 |
| None | No IPR available | PANTHER | PTHR46128 | FAMILY NOT NAMED | coord: 287..427
coord: 408..564
coord: 119..310 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_S-dermatodea_contig1153.985.1 ID=prot_S-dermatodea_contig1153.985.1|Name=mRNA_S-dermatodea_contig1153.985.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=684bp
MYESAGLAFVPAGHHVSLLVKAPTTAAATAVGMPMPTRAWAADEVPPHPL
PPSRPARCLKRVRQLSMSAVDVYRVGGVVLSGDSSSSDGGGGGSVGSVGE
PARVAPQQRRQTRAARAKLMQTFKSLGRSGLWMEALTQAQAARGRGVVFD
VYTYSALISAVASSGRWEEALALLDMMRSEGVTPDHFAFGAAVNACAKGG
EWERAVALLGQMRSEGLPPNVVCFNAAAHACARGGQWQRALGLLAEMVGV
GLSPNVNTFSAAVAACGNAGQWERALALLDQMIEEGVPPNEVTYSTAVSA
CGKAGQWRPALSILKRMRAAGCNPNVTTYTAAIDACGKAGEWERAQALLD
EMRAKGVAPNVISFNSAISALGNGGEWQRALDLLEGMPSMGVQPNVNSFT
AAVTACGDNKRWAKALAVHQQMMSRGIQGDDVSFTAAIDACAQGAQWHTA
LCLLDEMRAEGIPPTVRSFSAAISACGKAQEWARAVALLREMEADGVPPN
EVSFNAAIHACGRAGQWRAALSVLDRMSAAGVPPGTITYNAVIAACAKGK
EWSRAVSLLHEMLPDHQSEHRSSGNRSRTEVARAPTADIVSYSAAMDSCV
RAGRWDEAVAVLGLLRQDHRLDVRRQRMARSQEGLRRTKYATLTLEHLDR
FATVFDRCDDEGVRMQASELLGAMRARVTARNG* back to top
Annotated Terms
The following terms have been associated with this polypeptide:
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