mRNA_S-dermatodea_contig1151.978.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1151.978.1
Unique NamemRNA_S-dermatodea_contig1151.978.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1151.978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1151contigS-dermatodea_contig1151:18562..21002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size361
Cds size327
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1151.978.1prot_S-dermatodea_contig1151.978.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1151 18562..20970 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924206.7115765-CDS-S-dermatodea_contig1151:18561..186271622924206.7115765-CDS-S-dermatodea_contig1151:18561..18627Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1151 18562..18627 -
1694079092.4941628-CDS-S-dermatodea_contig1151:18561..186271694079092.4941628-CDS-S-dermatodea_contig1151:18561..18627Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1151 18562..18627 -
1622924206.720547-CDS-S-dermatodea_contig1151:20709..209701622924206.720547-CDS-S-dermatodea_contig1151:20709..20970Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1151 20710..20970 -
1694079092.5055392-CDS-S-dermatodea_contig1151:20709..209701694079092.5055392-CDS-S-dermatodea_contig1151:20709..20970Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1151 20710..20970 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924206.7290018-UTR-S-dermatodea_contig1151:20970..210021622924206.7290018-UTR-S-dermatodea_contig1151:20970..21002Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1151 20971..21002 -
1694079092.514769-UTR-S-dermatodea_contig1151:20970..210021694079092.514769-UTR-S-dermatodea_contig1151:20970..21002Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1151 20971..21002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1151.978.1

>prot_S-dermatodea_contig1151.978.1 ID=prot_S-dermatodea_contig1151.978.1|Name=mRNA_S-dermatodea_contig1151.978.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=109bp
MVSLVARTTGAVVALMFLSSPSTAFFASPMGASPSSRDIRDAGSRTRATA
ATARPFCSSRTGRRHEAYRRGASPAGWRGPRTYIVLQAATDGGEQQLSES
DTLEAQQGA
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mRNA from alignment at S-dermatodea_contig1151:18562..21002-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1151.978.1 ID=mRNA_S-dermatodea_contig1151.978.1|Name=mRNA_S-dermatodea_contig1151.978.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2441bp|location=Sequence derived from alignment at S-dermatodea_contig1151:18562..21002- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGCTGCCCTTCATCCAGTGTGTTTGGCGGCGATGGTGTCCCTCGTTGCT
CGCACGACGGGTGCGGTGGTTGCGTTGATGTTCCTGTCGTCACCATCTAC
CGCTTTTTTCGCGTCACCGATGGGAGCATCCCCTTCCTCTCGCGATATCA
GAGACGCTGGTAGTAGGACAAGAGCAACAGCAGCAACCGCCCGACCTTTT
TGCTCCTCCAGGACCGGCCGCAGACACGAGGCCTACCGAAGGGGGGCTTC
GCCAGCCGGATGGCGGGGGCCGCGAACATACATAGTGCTTCAGGTGCGAG
ATGCAGAGAAGCCGTGATTGGCGAGCGGTCTCTCTTGGCCTGTCGATACA
CCTCAAATGTACATGCAAATCCACAAGTAGAAATATTGTGAGGTTCGATC
AAACATGTGTCGATGTGTCCATGTTGACGTTCAGCGTATGTATGATGTAT
GATGCTCACCTGTGTTGTGTGCTCTTGGGGGGGCTTCACAAGCACATGCC
GAGGCTGATCGCAGAGCTGTAATTACTGGTGAGGTGGCGGTTGTGACTAA
GTCTGTCCTCGTGAAGTGCTGTAATATTCGCTTCCTAGTTCCTGGCGCCG
CCTGGAATGTTACGGCGAAATTAGTATGTACTATCATAGTTGAAAGCCAC
GGCTGTCGCCCGTAAGGTGTGCGTTGGCAGGACGATGTGCGGGTTTGGTT
TGGGATACGGTGTGGCGACCCACGGCAGGCGTATCGCTATGCATTTGAAA
AAGTAAATCGTATCGGATTTAGTATACCCAATCCGGCTTCAGTTGTAAAT
CGTATAGGATTTTTATAAAAGAATGGTTCACTCTTGTAATAATTAATAAG
GATGTACACAAGTACCGGACGCGAGGACGTTATAGTACCGATATTCTCAA
CATTCATCCTTATTCTAATTATTTGCAATCCGTCGAAATAACGATCATGT
CATATCACATGTTCATGTTATGCTCGCCGTCAACGACCCTGCTAACCGTC
AACGACTCCCCTAAAAGTACAACAACTATTTGACTTGTATGGTACCTGGT
ACGTATTACTGTATATACATGTGTTGGTAGTTTTTGACGCGTCTGCACAG
TAGTACAAGTATGACGCGTCTACTTGTAGATGATACGTGCAGGTGCGGCA
TAGTTTTCAGACCCAAATATCGAGTTGTAAACACAAGCAACCAATGCAAT
CGCCCCGAGCACCTTCTCCGGATTTTCTCTTTTATTTTCTAGAACGCGCA
CATTTTGCCCGGAAGATTGTGCACAGATAGTTGAGATGTTGAGATAGATG
TTGTATGATACTGTAGGTATTGTAGAGGTTTAAGGCCAGCATGCGTGTAC
TTGTAATGCTGTGGTATGCACTTTTCACTCAGAGGTTGGTTTACTATTGG
GGAAAACATTTCGTGCCTATAATACTGTAGATCGGATAGATTTGGTTCCA
TTAAACGTGTTCCTCCGTAATATAAGAAGTAGGGCGAAAAAGACCCGGGG
CAAGTGTGTATATACTTTACTTGTACGTAACCCAGTACCGGCGCTAATGG
CCCGGGGTCGGCCGTGCAACAGACAAAACAGGTGCCGACGCCGGTGCGAC
ACTGCCGGCGACCTGACACACCAACCGTCTTAGCCATGGCGAAGCCTGGC
GCGGGGCGCTCTCGTGGTTTTGTTTCGCCTGCTTGGCGCTCGGCTCGGGC
TTGTCCCCAGGTCGGCGCAAGCTTCCCCACGATTAATCTGCCTGATTATT
GTGGGCCCCCTCGCAGACTACGTATGCCCTCTGCCTAACAACATCTCCCC
TGCCAAACGGAAAAGCGGGCCCTGGGGAACCGATTTTCCTTGTATCGACC
CGAGGCCGTCGCAGTAACCAAGGCATGCAATTTTACCCGCTACGGTGTCA
ACGATCCGTCGGCCTCAGCGGCTAAACGGACAAACAGAGAAACAACCCTG
AGTCGTTCACCCCGATCTTAACGGTACTGCATATGATACGTGTCGTAAAT
TAGGCGCGCAAAACCATATTTATGCGCACCATATGATATGATACGTTAGT
TTAACCTCGGACGACTGCTGAATTCTCCCCATGTAATGATATACATACGT
ACGCTGTCGCTGCACACGAACACGATCACTGTCGATGTCCAACCAGGTGT
AACCTGCTTTTTGTTGTCTACTCGGTATATTTCAAGCCTGTACGATACGC
AACTTTTACACACAACAAGCAGCGTTAATCGCACTGATTGGACCTAAACA
GCTGTGCTCAGCGTACCTCTTTGCCAACCCCTGACCCACGTTGTTCGAGA
TTGCCGGCGTCCCGCCCTCGTGCAGCAACCAATTAACCTCATAAAATATA
CATTAATATGTCGGAAACCGCGCAGGCAGCGACGGACGGGGGCGAGCAGC
AGCTCAGCGAAAGCGACACGTTAGAAGCGCAACAAGGCGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1151:18562..21002-

>mRNA_S-dermatodea_contig1151.978.1 ID=mRNA_S-dermatodea_contig1151.978.1|Name=mRNA_S-dermatodea_contig1151.978.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at S-dermatodea_contig1151:18562..21002- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGTCCCTCGTTGCTCGCACGACGGGTGCGGTGGTTGCGTTGATGTT
CCTGTCGTCACCATCTACCGCTTTTTTCGCGTCACCGATGGGAGCATCCC
CTTCCTCTCGCGATATCAGAGACGCTGGTAGTAGGACAAGAGCAACAGCA
GCAACCGCCCGACCTTTTTGCTCCTCCAGGACCGGCCGCAGACACGAGGC
CTACCGAAGGGGGGCTTCGCCAGCCGGATGGCGGGGGCCGCGAACATACA
TAGTGCTTCAGATGGTGTCCCTCGTTGCTCGCACGACGGGTGCGGTGGTT
GCGTTGATGTTCCTGTCGTCACCATCTACCGCTTTTTTCGCGTCACCGAT
GGGAGCATCCCCTTCCTCTCGCGATATCAGAGACGCTGGTAGTAGGACAA
GAGCAACAGCAGCAACCGCCCGACCTTTTTGCTCCTCCAGGACCGGCCGC
AGACACGAGGCCTACCGAAGGGGGGCTTCGCCAGCCGGATGGCGGGGGCC
GCGAACATACATAGTGCTTCAGGCAGCGACGGACGGGGGCGAGCAGCAGC
TCAGCGAAAGCGACACGTTAGAAGCGCAACAAGGCGCGGCAGCGACGGAC
GGGGGCGAGCAGCAGCTCAGCGAAAGCGACACGTTAGAAGCGCAACAAGG
CGCG
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