mRNA_S-dermatodea_contig11504.973.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_S-dermatodea_contig11504.973.1
Unique Name	mRNA_S-dermatodea_contig11504.973.1
Type	mRNA
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)

Homology

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BLAST of mRNA_S-dermatodea_contig11504.973.1 vs. uniprot
Match: A0A6H5JG89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG89_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.290e-33
Identity = 62/89 (69.66%), Postives = 70/89 (78.65%), Query Frame = 1

Query:    1 VRSVWESKRDAGVLTYKVAELATRRETGVESGWECMFASNFGRHKPFPPAGPAESPWDPSDFNFYKGNPREFVLSYIPSFRYKREAAAA 267
            +R  W  K + GVL Y+VAEL  RR+ G E+GWE +FASN GRHKPFPPAGPAESPWDP  FNFYK +P EFVLSY PSFRY+RE AAA
Sbjct:  237 LRWFWNLKHERGVLAYEVAELNERRDVGQETGWEVVFASNVGRHKPFPPAGPAESPWDPYAFNFYKASPLEFVLSYTPSFRYEREIAAA 325

[Close]

BLAST of mRNA_S-dermatodea_contig11504.973.1 vs. uniprot
Match: D7G939_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G939_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 2.560e-32
Identity = 59/85 (69.41%), Postives = 66/85 (77.65%), Query Frame = 1

Query:    1 VRSVWESKRDAGVLTYKVAELATRRETGVESGWECMFASNFGRHKPFPPAGPAESPWDPSDFNFYKGNPREFVLSYIPSFRYKRE 255
            +R  W  K + GVL Y+VAEL  RR+ G E+GW  +FASN GRHKPFPPAGPAESPWDPS FNFYK +P EFVLSY PSFRY RE
Sbjct:  143 LRWFWNLKHERGVLAYEVAELNERRDVGQETGWGVVFASNVGRHKPFPPAGPAESPWDPSAFNFYKASPLEFVLSYTPSFRYGRE 227

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig11504.973.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig11504.973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JG89_9PHAE	1.290e-33	69.66	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G939_ECTSI	2.560e-32	69.41	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig11504	contig	S-dermatodea_contig11504:2646..4979 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	129.4
Seed ortholog evalue	1.5e-27
Seed eggNOG ortholog	2880.D7G939
Preferred name	GDPGP1
KEGG rclass	RC00002
KEGG ko	ko:K14190,ko:K15630
KEGG Reaction	R07678
KEGG Pathway	ko00053,ko01100,ko01110,map00053,map01100,map01110
KEGG Module	M00114
GOs	GO:0000302,GO:0001101,GO:0003674,GO:0003824,GO:0004645,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006950,GO:0006952,GO:0006979,GO:0008150,GO:0008152,GO:0008194,GO:0008905,GO:0008928,GO:0009058,GO:0009108,GO:0009110,GO:0009266,GO:0009408,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009719,GO:0009725,GO:0009753,GO:0009987,GO:0010033,GO:0010035,GO:0010193,GO:0010471,GO:0010472,GO:0010473,GO:0010474,GO:0010475,GO:0016043,GO:0016051,GO:0016053,GO:0016740,GO:0016757,GO:0016758,GO:0016772,GO:0016779,GO:0019318,GO:0019752,GO:0019852,GO:0019853,GO:0033036,GO:0033037,GO:0033554,GO:0035251,GO:0042221,GO:0042364,GO:0042493,GO:0042545,GO:0042742,GO:0043207,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0045229,GO:0046364,GO:0046394,GO:0046527,GO:0046677,GO:0050896,GO:0051179,GO:0051186,GO:0051188,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0052386,GO:0052482,GO:0052542,GO:0052543,GO:0052544,GO:0052545,GO:0070568,GO:0070727,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0080046,GO:0080048,GO:0098542,GO:1901576,GO:1901700
EggNOG free text desc.	GDP-D-glucose phosphorylase activity
EggNOG OGs	KOG2720@1,KOG2720@2759
EC	2.7.7.69,2.7.7.78
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000
Hectar predicted targeting category	other localisation
Exons	3
Model size	486
Cds size	483
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig11504.973.1	prot_S-dermatodea_contig11504.973.1	Saccorhiza dermatodea SderLu1190fm monoicous	polypeptide	S-dermatodea_contig11504 2646..4977 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622924206.4279277-CDS-S-dermatodea_contig11504:2645..2769	1622924206.4279277-CDS-S-dermatodea_contig11504:2645..2769	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig11504 2646..2769 +
1694079092.3078227-CDS-S-dermatodea_contig11504:2645..2769	1694079092.3078227-CDS-S-dermatodea_contig11504:2645..2769	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig11504 2646..2769 +
1622924206.4373686-CDS-S-dermatodea_contig11504:3311..3349	1622924206.4373686-CDS-S-dermatodea_contig11504:3311..3349	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig11504 3312..3349 +
1694079092.3216538-CDS-S-dermatodea_contig11504:3311..3349	1694079092.3216538-CDS-S-dermatodea_contig11504:3311..3349	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig11504 3312..3349 +
1622924206.4468157-CDS-S-dermatodea_contig11504:4656..4977	1622924206.4468157-CDS-S-dermatodea_contig11504:4656..4977	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig11504 4657..4977 +
1694079092.331862-CDS-S-dermatodea_contig11504:4656..4977	1694079092.331862-CDS-S-dermatodea_contig11504:4656..4977	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig11504 4657..4977 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at S-dermatodea_contig11504:2646..4979+
coding sequence from alignment at S-dermatodea_contig11504:2646..4979+

protein sequence of mRNA_S-dermatodea_contig11504.973.1

>prot_S-dermatodea_contig11504.973.1 ID=prot_S-dermatodea_contig11504.973.1|Name=mRNA_S-dermatodea_contig11504.973.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=161bp
VRSVWESKRDAGVLTYKVAELATRRETGVESGWECMFASNFGRHKPFPPA
GPAESPWDPSDFNFYKGNPREFVLSYIPSFRYKREAAAAAFEKSTGSAPA
LPVGAEPLLKIGEGDVDSPVAGLRGGAERQLLESQTGEESRTGEQRRELA
YFPSVECGDVS

mRNA from alignment at S-dermatodea_contig11504:2646..4979+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_S-dermatodea_contig11504.973.1 ID=mRNA_S-dermatodea_contig11504.973.1|Name=mRNA_S-dermatodea_contig11504.973.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2334bp|location=Sequence derived from alignment at S-dermatodea_contig11504:2646..4979+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCCGATCGGTGTGGGAGTCGAAGCGCGACGCGGGAGTCCTGACGTACAA
GGTGGCGGAGCTGGCGACGCGGCGAGAGACTGGGGTGGAGAGCGGTTGGG
AGTGCATGTTCGCCTCGAACTTTGGTGCGTTGGTGGTTCGGTTTTGTTGG
GTTTGGTTGGGGTGTAGGTACCATTTGGAACGGTGTGCTGGCGGGGGTGA
GGAAAGGGGTAAGGTAGGGTAGAGTTGTTTCGTTTCCATGCTGGGAACGG
TTTGACGGAGTTGGGTTCTGTGAGTGCAGTAGTGTGTGGTGTCAAGCTCT
GATTGCACCGCTTTCGTATCGGAACTGCAATCCCTTCGTCCCTCGTCCCG
AGGTATTTCTCTTCTATCGCTTCTTCTTGCCCGGCAACCGTTGCTTGTTG
TGGTGGCCCACCAGAGCCATACACACATCGACGAATTAAGTGCAGCGAAG
TAGTGGCACGCGCTAGATCGATGGGCCGAGCGTACACCCAGCGGTGCCAA
TTTGCACCACCGCGATACTTTCGACGCCATGGAACGGCTGTCGTACTAAT
GGCTCATCTCCACCTTCACCCGCTTCCCCTCTCCTCTGTCCCCAATCCGT
TCTACCGGCCGGCTGCCTTTGCACAACTTTCGTGGCCGACTGCACTGCCC
TTGCTGGCCGCTAAAGGACGCCATAAGCCGTTCCCTCCCGCGGGACCAGC
AGAGGTGAGGTGTGCCGGGGTTGCAGGGACTACCTGGTGCTGCCCCCGAT
TCTGGATCTAGATGGCATGCTCGGGGGCGGAAATCAGCCATGAAGAAAGC
GCCGCCGGTTTCACCACATGACGTCGTTCGGGAGTTCGAAGTTGGCGCCG
TTCAGTCGATTTTTCGGTCTTGTTGTTGCAGCGATTGTGTTCGTTTGGGA
GTTCGAAGTTGGCGTTTTTCAGTCGCTTTTTCGGTTTTGTGGTTGCCTGC
GGTTTTTCTTGACGCGCGCGATTGCCGGCACGGTTCGTCGTTGCTGATTC
GTTTTTTGTTCCTTTCCGTGGGGGGTAGGATTCCACCTAGTCAGCAATGT
ATTAATAATATGCAGTACAGTTGTACTTATAGCAGGACCCACAGCACCAT
ATAAAATGTAGGCTTCCACTTAGTGAAAAATGGTTGCAAGCCACGGCTGT
CGCCCGTGAGGTGTGCGTTGGCGGGACGATGTGCGGGTTAGGTNNNNNNN
NNNCTTCAGTTTGAAAATGTGAAATCGTATGTAATTTAGTATGCCTACAC
TTTATTGTAGTGTAAAACATTGGTTGACTCTTGTATTAATTAATAAGGAT
ACTGAATACAGTACGATGGTATTAATACAGCACCCCATGCCAAAATATAT
AACGTAGGCTTCCACTGAGTTAGATTGGGCCATCATTTTCATTTTCCTCT
ACCACAAAGATTGGACCCCAAAGCTATTAATACAGTAGTTAGTTCTGTTC
TTATCAATATGTACTGTCTTTTCGAGGGGGGGTCGAGGTTTTGATTTCGG
TGCTACAGGTTTGCCTCTGTTTCGAAAGTAATTTTGATGGCGTCACGGAA
CGAGATGCCGTGCGCTATGCCAAATCGAGCGCACCATGGACCCCGTACGA
TACCAGATGGCGCATGTGATCGTGCGCGTCGGATGACCACGGTGCGTCCC
GTCAAGCGCGCCCAACTATCCGTGTGCCGCTACGAACGCCTGCCCACTTA
GAGGGGCACGTCTTTTTCACGGCGCACTAAACAGTGTACCAGTACTTATT
GGCAAGTTTTTCGGTCCGCCGTAGGTTCGCTTGTTGCCTCAGCCAGTCAG
TTTTTCCCCAAGAAAAACTTTTACTTGTTGCACCTCTGCTGGGCCACAGC
ATCTCCCTTTGCGGCCTATTTGTTTGCAATAAACGAAACCTGTTTCCTGC
GTTTTTAGTATCCTGGAAAACCCCTTACCCCCCCCCCCCCCGCGCCCCCC
GCCCAACACCTCATACTTCACCCTCCGTCAAATCACCCCGCACCCCCTCT
TTCCACAAAAGTCCCCCTGGGACCCGTCCGATTTCAACTTCTACAAGGGT
AACCCCCGGGAGTTCGTGCTATCCTACATTCCGAGCTTCCGGTACAAACG
AGAGGCGGCGGCGGCGGCGTTCGAGAAAAGTACAGGGAGCGCCCCGGCAT
TACCGGTAGGGGCCGAACCCTTGTTGAAAATTGGAGAAGGAGACGTAGAC
TCGCCGGTAGCCGGGCTTCGAGGTGGAGCCGAGCGCCAGTTGCTGGAGAG
TCAGACGGGGGAGGAGTCCCGCACGGGGGAGCAGCGGCGCGAGCTGGCTT
ACTTCCCCTCGGTGGAGTGCGGGGATGTTTCGAC

Coding sequence (CDS) from alignment at S-dermatodea_contig11504:2646..4979+

>mRNA_S-dermatodea_contig11504.973.1 ID=mRNA_S-dermatodea_contig11504.973.1|Name=mRNA_S-dermatodea_contig11504.973.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at S-dermatodea_contig11504:2646..4979+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCCGATCGGTGTGGGAGTCGAAGCGCGACGCGGGAGTCCTGACGTACAA
GGTGGCGGAGCTGGCGACGCGGCGAGAGACTGGGGTGGAGAGCGGTTGGG
AGTGCATGTTCGCCTCGAACTTTGGTCCGATCGGTGTGGGAGTCGAAGCG
CGACGCGGGAGTCCTGACGTACAAGGTGGCGGAGCTGGCGACGCGGCGAG
AGACTGGGGTGGAGAGCGGTTGGGAGTGCATGTTCGCCTCGAACTTTGGA
CGCCATAAGCCGTTCCCTCCCGCGGGACCAGCAGAGGACGCCATAAGCCG
TTCCCTCCCGCGGGACCAGCAGAGTCCCCCTGGGACCCGTCCGATTTCAA
CTTCTACAAGGGTAACCCCCGGGAGTTCGTGCTATCCTACATTCCGAGCT
TCCGGTACAAACGAGAGGCGGCGGCGGCGGCGTTCGAGAAAAGTACAGGG
AGCGCCCCGGCATTACCGGTAGGGGCCGAACCCTTGTTGAAAATTGGAGA
AGGAGACGTAGACTCGCCGGTAGCCGGGCTTCGAGGTGGAGCCGAGCGCC
AGTTGCTGGAGAGTCAGACGGGGGAGGAGTCCCGCACGGGGGAGCAGCGG
CGCGAGCTGGCTTACTTCCCCTCGGTGGAGTGCGGGGATGTTTCGTCCCC
CTGGGACCCGTCCGATTTCAACTTCTACAAGGGTAACCCCCGGGAGTTCG
TGCTATCCTACATTCCGAGCTTCCGGTACAAACGAGAGGCGGCGGCGGCG
GCGTTCGAGAAAAGTACAGGGAGCGCCCCGGCATTACCGGTAGGGGCCGA
ACCCTTGTTGAAAATTGGAGAAGGAGACGTAGACTCGCCGGTAGCCGGGC
TTCGAGGTGGAGCCGAGCGCCAGTTGCTGGAGAGTCAGACGGGGGAGGAG
TCCCGCACGGGGGAGCAGCGGCGCGAGCTGGCTTACTTCCCCTCGGTGGA
GTGCGGGGATGTTTCG