mRNA_S-dermatodea_contig11500.972.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11500.972.1
Unique NamemRNA_S-dermatodea_contig11500.972.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig11500.972.1 vs. uniprot
Match: D8LI69_ECTSI (U-box domain containing protein, expressed n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI69_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.730e-24
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:   22 MSVWRGPVDVFEAIDRRDWQTVKDAVMPGKANLRDAHHDATLLHWVVNEGHVPTVQHLLACGADV 216
            M+++R  VDVFEAI++ DWQ VKD V+PGKAN RD+ +DATLLHW VNEGH+PTV+HLLACGADV
Sbjct:    1 MNLFRSRVDVFEAINKGDWQKVKDNVVPGKANARDSQYDATLLHWAVNEGHMPTVEHLLACGADV 65
[Close]
BLAST of mRNA_S-dermatodea_contig11500.972.1 vs. uniprot
Match: A0A6H5KWH5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWH5_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.970e-24
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:   22 MSVWRGPVDVFEAIDRRDWQTVKDAVMPGKANLRDAHHDATLLHWVVNEGHVPTVQHLLACGADV 216
            M+++R  VDVFEAI++ DWQ VKD V+PGKAN RD+ +DATLLHW VNEGH+PTV+HLLACGADV
Sbjct:    1 MNLFRSRVDVFEAINKGDWQKVKDNVVPGKANARDSQYDATLLHWAVNEGHMPTVEHLLACGADV 65
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11500.972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI69_ECTSI1.730e-2472.31U-box domain containing protein, expressed n=1 Tax... [more]
A0A6H5KWH5_9PHAE1.970e-2472.31Protein kinase domain-containing protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11500contigS-dermatodea_contig11500:1500..4742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue1.3e-20
Seed eggNOG ortholog2880.D8LI69
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0515@1,COG0666@1,KOG0504@2759,KOG1187@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size304
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11500.972.1prot_S-dermatodea_contig11500.972.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11500 1500..4721 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924206.3705492-CDS-S-dermatodea_contig11500:1499..15661622924206.3705492-CDS-S-dermatodea_contig11500:1499..1566Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11500 1500..1566 -
1694079092.2733939-CDS-S-dermatodea_contig11500:1499..15661694079092.2733939-CDS-S-dermatodea_contig11500:1499..1566Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11500 1500..1566 -
1622924206.379348-CDS-S-dermatodea_contig11500:3010..31351622924206.379348-CDS-S-dermatodea_contig11500:3010..3135Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11500 3011..3135 -
1694079092.2829344-CDS-S-dermatodea_contig11500:3010..31351694079092.2829344-CDS-S-dermatodea_contig11500:3010..3135Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11500 3011..3135 -
1622924206.3873866-CDS-S-dermatodea_contig11500:4631..47211622924206.3873866-CDS-S-dermatodea_contig11500:4631..4721Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11500 4632..4721 -
1694079092.2905087-CDS-S-dermatodea_contig11500:4631..47211694079092.2905087-CDS-S-dermatodea_contig11500:4631..4721Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11500 4632..4721 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924206.397718-UTR-S-dermatodea_contig11500:4721..47421622924206.397718-UTR-S-dermatodea_contig11500:4721..4742Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11500 4722..4742 -
1694079092.298459-UTR-S-dermatodea_contig11500:4721..47421694079092.298459-UTR-S-dermatodea_contig11500:4721..4742Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11500 4722..4742 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11500.972.1

>prot_S-dermatodea_contig11500.972.1 ID=prot_S-dermatodea_contig11500.972.1|Name=mRNA_S-dermatodea_contig11500.972.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=94bp
MSVWRGPVDVFEAIDRRDWQTVKDAVMPGKANLRDAHHDATLLHWVVNEG
HVPTVQHLLACGADVHSRDGKHFASPLHWAAAKGHVVAVRLLLT
back to top

mRNA from alignment at S-dermatodea_contig11500:1500..4742-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11500.972.1 ID=mRNA_S-dermatodea_contig11500.972.1|Name=mRNA_S-dermatodea_contig11500.972.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3243bp|location=Sequence derived from alignment at S-dermatodea_contig11500:1500..4742- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTGTCGTAGTGCGGGTGGCGATGAGCGTCTGGCGGGGCCCCGTGGACGT
CTTCGAGGCAATCGATCGGCGTGACTGGCAAACGGTGAAGGATGCCGTCA
TGCCGGGCAAGGTGAATTTTTTAAAGATGGATCAAGCAAGCTCGCATTTT
TACCCGTTTCTCTTGTACGTACACATGCTCTTCTGCGTTTTTTGTTTTTC
ACACTACATGTCTGTTGTACTTGTAGCCTGGCCACGTACTGGGTGAGCGG
GATCTACGAGCTGTTGTGAGTCGGGTTCAGGGGGTCCTAGTTTTCGGTTC
TGGGCGTTTGAACCCTCAGAAGCAAACGTATCTCGCCACACCCTTGCCGG
CGACACGGCTAATACGCACATTAAGTCGGTAGAATCTTGAGCTGTTATCA
CGAAAACGTCGCAACGCGCGTCCAAGTCTGGACGGGCGAGGCTTCGTCGT
AAGGACCTCCCCCCCCCTCCGTGCTCGTTTTGGTGGAGGCGTGTGCCAAG
GTTAGCACCGGTACCCTCGACTTTCGTGCTGTCGAATCGACACAATCGCG
TGCATCGGGAATGCCTGCGGGGATGGCGCTTTTCCAAGCGCGCGCGCCAC
CTCCTCGATACAGCTGTCTTTATGTCATTTGACGCCCCCTGCCTTCGCAG
CTGCAGTGAGGCTTTCGTTCCTCGTATTTCTGTACTTGTATTGTTAATAG
TGGAGATTGATGATACTGCGTTCGAACAGCCGGCAGGCGTGCGTGACACT
CGTGGATGTTTATTTTTATTTTTCACGAGAGGGAGAGAGAGCGTCCGTGA
CGTAGGCGAGTGGACGGGAAATGCGTGGACATGGATTGGAATAGTTTCCG
ATCTAGAGAAAATACACGCACGTTCCGTCGCCTGGCCCTTGCACGTGCAA
GTACATGCGTAGACCAAGTAGGCTTATACGTCGCATGGCGGTTCGGATGC
TTCCACCCATAGCGAGGTATATATACAATCCGCGGTCAACCCCCCCCCCC
CCTCTTGGACGCGATCACTATTTTGCGGTATTTACTCGGTCGTTCATCGG
GTTCAAGCGGCTGGATGTGGACTCTGTTTTTGCGAAAGAAGCCGCCCGTG
GGTGCTAGCTAGGATCGCTTGCGCGTGATGATGATGAACCCTTCAAATGT
GATTTGCTGCATGCACGAAGTAGACAAGACCTCGCGTTACGTTGTTTCCG
CACTTCTGCTCGGTTTTCCATCTCACTTTTGTTTCAATTCATTTTACTTT
TTTGCTTCACCCCGCCTTGTTTGCACTTGTCGCTTGCGCTTTCAGCTCAG
CGGTATCGTGCCGCGCTCGCGTAGATCGCCGCGCTCGGGGTGCCCACTCG
TTTTTGTTTGGATCACGGGCCGCAAACCACCTAGTTGTAGTGGGTGTCTT
TCTGGCACCGATGTACAGACCCCACGTGCTCCTCCTCCCCTTCTTTGCGC
GAAGAATTCGCCCTTATTCAACCGTTCACCGCCGTTTTTACGCTGTTTCT
TGACACCAACTTTCGGCGTTCTTCTTGTGCGTTTCGTGTCTGGGCTCGCA
CCACAACACTATCGTTTTTCGTTTTTCGTTTTTCGTTTTTCGTTTTTTTT
TTAACAGGCTAACCTGCGCGACGCGCACCACGACGCAACCCTCCTACACT
GGGTCGTCAACGAGGGTCACGTGCCCACCGTGCAGCACCTGCTGGCCTGC
GGCGCCGACGTACACTCGAGAGACGGCAAACAGTGAGGACTGCAATACAC
TCGCTTGTAGAGCAAGCAGTTGCTCATGCACGTACTGTAACATCCCAACC
GCTGTATTTCATGAGTTTTGTGCTACAAAATATACACACTTTGGTGTTGA
GAACATGCTGCAACACATTGTAATAGTACATTGTAATGTGCGTTATAAAA
TATATTATACTACAGCAGTGCTGCTGCGGTATTAGACATGGGGGTGGTTG
TTGAGAATATGATCATGGACGTGCGTTGGTTGTCCTCGCACGACTGGCAT
GCATCGTGTCCGGGAAGCAGAGCTTTGTGACCCTGAAAACTGAGAGCCTT
CGCCCCGAGAATCCCGAGAAGATGGGGAGAGCATTGGGGCTTCACTATAT
AAGTGCGCTAGGCATGGTCGGAAAATGCGAAAGCTCCATCGTCAAGCGAG
AGCGTCAGCGAGACCTGAGCAGGAAGCGAGCGACAATCGCGCTTGAGTGG
GAGGCGAGCGAACTGGAAAATTTCCTCCAGAGCGCATCGCACGCGCCGTA
GAAAAATAAATCCCATACCAGTGTAGCTATGCATGCACCACCAGCAGTGG
TCATACAGTAGTGTACCAGTAGTATTTGTTGGAAGAGATCTCTTTGCGGG
CGAAACCTGCGATCCTTCCAGGTCGCTGTACCCGTCGTCAGGGGCCTCAG
GAATGATCGAGTTACCGACTTCCCGCCGCCACGTGGTCACTCCTTTGATC
CACGACTCGGCCTCTGTTCACCCTTGATTGCTACCTCCCCCCCGTTAAGC
TGAGACCTACAACCCCCCTGCCTTTGAGGTTCGAGGTGGGGTTGGTCGAG
GTAGGGTTGGCTCTGGTGGCATGGGGCTGTAAAACTGCTATTTGTTTATA
AGGCATGGGGTGGTTCATGCAGTATGTCCTGTGAGCTCGGAGACCTCGGT
GGAAGAGTCTTGTCTCTCCCCAAACGGGTGAAACGCCATCACATCCTACA
GGGCACCTGTTGAACATTGGGATGTTGGGAAGCCCTGGAGCAACCACTGA
CTTATGAGTGGTACTCCGCCAGGAGTACTCATGATCAGATTATAGTCCGA
GTGTATCATACGTCTGTCGTGGTGTAGTTGTGTGCGTGCGGCGCTTTTGC
GTTCACACCGAGATCGAAGTCCCTTTGCGGTACTTGGAGTATAGTCACGC
CTACTGATTGTGCAACAGTTTTGTTGACCGGTATGACATGTCCAATGGAC
CCATGGCATACTGTTTGGCGTCGCAAACGCGAGAGGGATGACCAGCAGCT
GGTAACATCCTTGTGAAACGCAGCCTGGCCGGCGAAAAGCCGGCATATCG
CTCCTCTCCGTCCCGGCATTGTTGGGACGCATGGTCGATGTCCGTCTGGA
TACGACATGCGTTTAACATAAGTACACCCCGCATCATGTCCCGCGCGCGG
TTGTTTTTTCTTGGTTTGCGATTCAGCTTCGCGTCGCCGCTGCACTGGGC
AGCCGCTAAGGGCCACGTGGTGGCGGTGCGGCTTCTCCTTACG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig11500:1500..4742-

>mRNA_S-dermatodea_contig11500.972.1 ID=mRNA_S-dermatodea_contig11500.972.1|Name=mRNA_S-dermatodea_contig11500.972.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at S-dermatodea_contig11500:1500..4742- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGCGTCTGGCGGGGCCCCGTGGACGTCTTCGAGGCAATCGATCGGCG
TGACTGGCAAACGGTGAAGGATGCCGTCATGCCGGGCAAGATGAGCGTCT
GGCGGGGCCCCGTGGACGTCTTCGAGGCAATCGATCGGCGTGACTGGCAA
ACGGTGAAGGATGCCGTCATGCCGGGCAAGGCTAACCTGCGCGACGCGCA
CCACGACGCAACCCTCCTACACTGGGTCGTCAACGAGGGTCACGTGCCCA
CCGTGCAGCACCTGCTGGCCTGCGGCGCCGACGTACACTCGAGAGACGGC
AAACAGCTAACCTGCGCGACGCGCACCACGACGCAACCCTCCTACACTGG
GTCGTCAACGAGGGTCACGTGCCCACCGTGCAGCACCTGCTGGCCTGCGG
CGCCGACGTACACTCGAGAGACGGCAAACACTTCGCGTCGCCGCTGCACT
GGGCAGCCGCTAAGGGCCACGTGGTGGCGGTGCGGCTTCTCCTTACGCTT
CGCGTCGCCGCTGCACTGGGCAGCCGCTAAGGGCCACGTGGTGGCGGTGC
GGCTTCTCCTTACG
back to top