mRNA_S-dermatodea_contig11490.967.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11490.967.1
Unique NamemRNA_S-dermatodea_contig11490.967.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11490.967.1 vs. uniprot
Match: D8LTI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTI8_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 1.210e-32
Identity = 173/383 (45.17%), Postives = 192/383 (50.13%), Query Frame = 1 
Query:    1 QTCRRDMSKKEEQLLSPEDHERLAAGALESDILRDRAYGGGASGGGDSEGTISDSENSTTGDPDAEYAFGNSNGGDDEHGGSANEGLLGERAATVEAISARSPH----------------SPVSSGGSQDGDVSDPEGRGRRGSCCVDGEMRDDERGPLSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSSLHSPHRFFSPMEDDTSPPGSPSAISP-RRFTSPSGRRSXXXXXXXXXPGSSRSGSVADGHVMFESG-SLDRR--DAVCRPPLAHSAWGQRRRTPH------DPSSSR----WEDNPMDERRLDSMSHRAAADRMNGRGGGRDDVQGMGMG 1059
            + CRRDMSKKEEQLLS EDHERLAA ALESD+LR R YG GA  GGDSEGTISDSENSTTGD D  Y   +                                                 S  +  GS+DG   + + R +  S          + GP +S                                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSS+HSP R FSPMED +      S ++P RRFTSPSGRRS         PGSSRSGSVADGHVMFESG S D+   D VCRPPLAH+ WG      H      D S SR    WE      R     SH A      GRGG  + ++G G G
Sbjct:  125 EACRRDMSKKEEQLLSLEDHERLAAAALESDVLRGRGYGSGA--GGDSEGTISDSENSTTGDLDGGYQSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDDASETAXAGSEDGKRKEGDARAKERS-------NPQQNGPRTS--------------------LKNNSGAPNNLSDSQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSSIHSPQRCFSPMEDSSPLGAQSSTMAPQRRFTSPSGRRSPPRSPSVSSPGSSRSGSVADGHVMFESGESSDQSHGDTVCRPPLAHNPWGNHHEHQHQQPWELDASGSREKPRWESGRG--RINGGGSHAAGDPARRGRGGRVEGLRGRGRG 476
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BLAST of mRNA_S-dermatodea_contig11490.967.1 vs. uniprot
Match: A0A6H5K7H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7H2_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.880e-32
Identity = 160/319 (50.16%), Postives = 174/319 (54.55%), Query Frame = 1 
Query:    1 QTCRRDMSKKEEQLLSPEDHERLAAGALESDILRDRAYGGGASGGGDSEGTISDSENSTTGDPDAEYAFGNSNGGDDEHGGSANEGLLGERAATVEAISARS-PHSPVSSGGSQDGD------VSDPEGRGRRGSCCVDGEMRDDERGPLSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSSLHSPHRFFSPMEDDTSPPGSPSAISP-RRFTSPSGRRSXXXXXXXXXPGSSRSGSVADGHVMFESG-SLDR--RDAVCRPPLAHSAWGQRRRTPH 924
            + CRRDMSKKEEQLLS EDHERLAA ALESD+LR R YG GA  GGDSEGTISDSENSTTGD D  Y   +                                P+S        DGD      V+  E   R+     +G+ R  ER  L                                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSS+HSP R FSPME  +      SA++P RRFTSPSGRRS         PGSSRSGSVADGHVMFESG S D+  RD VCRPPLAH+ WG      H
Sbjct:  970 EACRRDMSKKEEQLLSLEDHERLAAAALESDVLRGRGYGSGA--GGDSEGTISDSENSTTGDLDGGYQSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLPNSXXXXXXXXDGDDASETAVARSEDDKRK-----EGDARAKERSSLQQ--------------NGPRTSLKNNSGAPNNLSDSQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSSIHSPQRCFSPMEGGSPLGAQSSAMAPQRRFTSPSGRRSPPRSPSVSSPGSSRSGSVADGHVMFESGESSDQSHRDTVCRPPLAHNPWGHHHEHQH 1267
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11490.967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTI8_ECTSI1.210e-3245.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7H2_9PHAE1.880e-3250.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11490contigS-dermatodea_contig11490:4827..6908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_005780.1
Exons3
Model size1059
Cds size1041
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11490.967.1prot_S-dermatodea_contig11490.967.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11490 4827..6890 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924205.4445553-CDS-S-dermatodea_contig11490:4826..50251622924205.4445553-CDS-S-dermatodea_contig11490:4826..5025Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11490 4827..5025 -
1694079091.4017148-CDS-S-dermatodea_contig11490:4826..50251694079091.4017148-CDS-S-dermatodea_contig11490:4826..5025Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11490 4827..5025 -
1622924205.461228-CDS-S-dermatodea_contig11490:5461..62141622924205.461228-CDS-S-dermatodea_contig11490:5461..6214Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11490 5462..6214 -
1694079091.4109488-CDS-S-dermatodea_contig11490:5461..62141694079091.4109488-CDS-S-dermatodea_contig11490:5461..6214Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11490 5462..6214 -
1622924205.471886-CDS-S-dermatodea_contig11490:6801..68901622924205.471886-CDS-S-dermatodea_contig11490:6801..6890Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11490 6802..6890 -
1694079091.4202826-CDS-S-dermatodea_contig11490:6801..68901694079091.4202826-CDS-S-dermatodea_contig11490:6801..6890Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11490 6802..6890 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924205.482648-UTR-S-dermatodea_contig11490:6890..69081622924205.482648-UTR-S-dermatodea_contig11490:6890..6908Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11490 6891..6908 -
1694079091.4294927-UTR-S-dermatodea_contig11490:6890..69081694079091.4294927-UTR-S-dermatodea_contig11490:6890..6908Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11490 6891..6908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11490.967.1

>prot_S-dermatodea_contig11490.967.1 ID=prot_S-dermatodea_contig11490.967.1|Name=mRNA_S-dermatodea_contig11490.967.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=347bp
MSKKEEQLLSPEDHERLAAGALESDILRDRAYGGGASGGGDSEGTISDSE
NSTTGDPDAEYAFGNSNGGDDEHGGSANEGLLGERAATVEAISARSPHSP
VSSGGSQDGDVSDPEGRGRRGSCCVDGEMRDDERGPLSSPRGSPRGRPRD
SPRSSPRNSPRNSPRNTPQSSPPHSTEGSLQNSPDNSPQNSPRNHKRGPG
SEGGSESGCSSLHSPHRFFSPMEDDTSPPGSPSAISPRRFTSPSGRRSPP
GSPTVSSPGSSRSGSVADGHVMFESGSLDRRDAVCRPPLAHSAWGQRRRT
PHDPSSSRWEDNPMDERRLDSMSHRAAADRMNGRGGGRDDVQGMGMG
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mRNA from alignment at S-dermatodea_contig11490:4827..6908-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11490.967.1 ID=mRNA_S-dermatodea_contig11490.967.1|Name=mRNA_S-dermatodea_contig11490.967.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2082bp|location=Sequence derived from alignment at S-dermatodea_contig11490:4827..6908- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGACTTGCAGGAGGGACATGTCGAAGAAGGAGGAGCAGCTGCTTAGCCC
GGAAGACCACGAGAGGCTTGCGGCGGGAGCGCTGGAATCCGACATTCTGA
GGGATAGGTGAGCCCTGGGTGGCGCGGCGATTTGCACGGGGCCGCCGTCA
AGTGCTCGCAGCCGTTGCCTCACAGGGGGTTTGATTTGTTGATTGATTGA
TTGGCGCGTGAATTTGTTTTCACGGTCATGATCGTAGCCGATCAGTTAAA
CGTCCGACCCAGCTTGTGGTCAGAGATGCGCGAGGAATCAGGGGAATAAA
TCATAAATCTGCCTGGAATTTTTCAGCGGTTCTTTCGTACAAGAAATAAT
ATACTATTACAGTGCTGTGAAATAAAAATACAATCTATCCCCCACGGCGG
TGTCGTGGTAATAATGCTGTATTTGCGTCACGGGTGCGGCTGCTGTATTC
ACATGACAAAACGCGGCTGATAGGCCGACTGCCTGCTCTTGGCAGAAGCC
AACTAAAAACTGGCTATTTCTTTTCTGACAAATGGCTAGATTGGATTCGT
CGCGGACCAAGTACTTTGTGAGGATGAAGCCAATCAATCACACATACACG
CACACACACCGACAGCAGCAGTTCCCTGTATTAACAGCATATTCCCTACA
ACCTCTGTCTTCCCCCACCCTTGCCCCAACGTCGCACGGGACAGGGCATA
CGGAGGTGGCGCCAGCGGAGGGGGCGACAGCGAGGGCACCATCTCAGATT
CCGAAAACAGCACCACGGGAGACCCGGATGCGGAATACGCGTTCGGAAAC
AGCAACGGCGGTGACGATGAGCATGGTGGCTCTGCTAACGAAGGCTTGCT
TGGCGAAAGGGCGGCGACAGTGGAGGCGATATCAGCGAGGTCACCTCATT
CCCCGGTCTCCTCGGGTGGATCTCAAGACGGAGATGTGAGCGACCCCGAG
GGAAGGGGGAGGCGGGGCAGCTGCTGCGTGGACGGCGAAATGAGAGATGA
TGAACGCGGCCCGCTGAGCAGCCCGCGTGGCAGCCCGCGTGGCCGTCCAA
GGGATAGCCCACGGAGCAGTCCAAGGAATAGTCCAAGGAACAGCCCGCGG
AATACTCCGCAGAGCAGTCCGCCGCATAGCACAGAGGGTAGCCTGCAGAA
CAGTCCCGATAACAGCCCGCAGAACAGTCCGAGGAACCACAAACGGGGTC
CGGGGAGTGAGGGGGGATCGGAATCGGGCTGTTCGTCTCTGCACTCCCCT
CACAGGTTTTTCTCGCCCATGGAGGACGATACGTCACCCCCTGGTTCGCC
GTCAGCGATATCTCCTAGGCGGTTCACATCGCCCAGTGGGAGGCGATCTC
CTCCGGGGTCACCAACGGTTTCGTCCCCGGGATCCTCGCGATCGGGGAGT
GTCGCGGACGGGCACGTGATGTTTGAAAGCGGGTCATTGGACAGGAGGTG
AGCAAAAGCTGGGGCGACGGGCGGGGAGGGAGGGCGTGCAAGCGAGCGAG
CTACTTTTTGGGCGCGACGCCCCTACACTGTTGTGTTTCGAGTGGAAAGC
GACCCAGCCGCGGTTACTCTGGCCTAAATAGCGGCGGTGGGCGAAAGCCT
CGCCCTTCTATCATATGCCTACTATAGTTCTCCCGCAACGTAGACGCTTG
CATGCACGTTGCACGCCTCAAGCCGCGTATTGCCGCGAACACGATACTAC
TATGATATAGCCGAGGAACGGACTCAGTTGCGAAAGGCTTAACTCTAACA
TTTGGCCTTGGTTTTTGGTTTGTTAGCCGGTACCCAGAGAGGCACGCCAG
CAAAACAAAGTACCCCTCGTTTTAGTTTTTTAACTCCAAAAAAATCACGG
CGCCGCCGAACTCCCCTCCTCGTCCTGCCGCAGGGATGCCGTCTGTCGCC
CCCCCCTGGCGCACAGCGCTTGGGGGCAGCGCCGCCGCACCCCCCACGAC
CCCTCATCCTCTCGGTGGGAAGATAACCCCATGGATGAGCGACGCCTCGA
CAGCATGTCGCACCGAGCTGCCGCCGACCGCATGAACGGCAGGGGCGGCG
GGCGAGACGACGTGCAGGGCATGGGCATGGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11490:4827..6908-

>mRNA_S-dermatodea_contig11490.967.1 ID=mRNA_S-dermatodea_contig11490.967.1|Name=mRNA_S-dermatodea_contig11490.967.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2082bp|location=Sequence derived from alignment at S-dermatodea_contig11490:4827..6908- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGAAGAAGGAGGAGCAGCTGCTTAGCCCGGAAGACCACGAGAGGCT
TGCGGCGGGAGCGCTGGAATCCGACATTCTGAGGGATAGATGTCGAAGAA
GGAGGAGCAGCTGCTTAGCCCGGAAGACCACGAGAGGCTTGCGGCGGGAG
CGCTGGAATCCGACATTCTGAGGGATAGGGCATACGGAGGTGGCGCCAGC
GGAGGGGGCGACAGCGAGGGCACCATCTCAGATTCCGAAAACAGCACCAC
GGGAGACCCGGATGCGGAATACGCGTTCGGAAACAGCAACGGCGGTGACG
ATGAGCATGGTGGCTCTGCTAACGAAGGCTTGCTTGGCGAAAGGGCGGCG
ACAGTGGAGGCGATATCAGCGAGGTCACCTCATTCCCCGGTCTCCTCGGG
TGGATCTCAAGACGGAGATGTGAGCGACCCCGAGGGAAGGGGGAGGCGGG
GCAGCTGCTGCGTGGACGGCGAAATGAGAGATGATGAACGCGGCCCGCTG
AGCAGCCCGCGTGGCAGCCCGCGTGGCCGTCCAAGGGATAGCCCACGGAG
CAGTCCAAGGAATAGTCCAAGGAACAGCCCGCGGAATACTCCGCAGAGCA
GTCCGCCGCATAGCACAGAGGGTAGCCTGCAGAACAGTCCCGATAACAGC
CCGCAGAACAGTCCGAGGAACCACAAACGGGGTCCGGGGAGTGAGGGGGG
ATCGGAATCGGGCTGTTCGTCTCTGCACTCCCCTCACAGGTTTTTCTCGC
CCATGGAGGACGATACGTCACCCCCTGGTTCGCCGTCAGCGATATCTCCT
AGGCGGTTCACATCGCCCAGTGGGAGGCGATCTCCTCCGGGGTCACCAAC
GGTTTCGTCCCCGGGATCCTCGCGATCGGGGAGTGTCGCGGACGGGCACG
TGATGTTTGAAAGCGGGTCATTGGACAGGAGGGCATACGGAGGTGGCGCC
AGCGGAGGGGGCGACAGCGAGGGCACCATCTCAGATTCCGAAAACAGCAC
CACGGGAGACCCGGATGCGGAATACGCGTTCGGAAACAGCAACGGCGGTG
ACGATGAGCATGGTGGCTCTGCTAACGAAGGCTTGCTTGGCGAAAGGGCG
GCGACAGTGGAGGCGATATCAGCGAGGTCACCTCATTCCCCGGTCTCCTC
GGGTGGATCTCAAGACGGAGATGTGAGCGACCCCGAGGGAAGGGGGAGGC
GGGGCAGCTGCTGCGTGGACGGCGAAATGAGAGATGATGAACGCGGCCCG
CTGAGCAGCCCGCGTGGCAGCCCGCGTGGCCGTCCAAGGGATAGCCCACG
GAGCAGTCCAAGGAATAGTCCAAGGAACAGCCCGCGGAATACTCCGCAGA
GCAGTCCGCCGCATAGCACAGAGGGTAGCCTGCAGAACAGTCCCGATAAC
AGCCCGCAGAACAGTCCGAGGAACCACAAACGGGGTCCGGGGAGTGAGGG
GGGATCGGAATCGGGCTGTTCGTCTCTGCACTCCCCTCACAGGTTTTTCT
CGCCCATGGAGGACGATACGTCACCCCCTGGTTCGCCGTCAGCGATATCT
CCTAGGCGGTTCACATCGCCCAGTGGGAGGCGATCTCCTCCGGGGTCACC
AACGGTTTCGTCCCCGGGATCCTCGCGATCGGGGAGTGTCGCGGACGGGC
ACGTGATGTTTGAAAGCGGGTCATTGGACAGGAGGGATGCCGTCTGTCGC
CCCCCCCTGGCGCACAGCGCTTGGGGGCAGCGCCGCCGCACCCCCCACGA
CCCCTCATCCTCTCGGTGGGAAGATAACCCCATGGATGAGCGACGCCTCG
ACAGCATGTCGCACCGAGCTGCCGCCGACCGCATGAACGGCAGGGGCGGC
GGGCGAGACGACGTGCAGGGCATGGGCATGGGCGGATGCCGTCTGTCGCC
CCCCCCTGGCGCACAGCGCTTGGGGGCAGCGCCGCCGCACCCCCCACGAC
CCCTCATCCTCTCGGTGGGAAGATAACCCCATGGATGAGCGACGCCTCGA
CAGCATGTCGCACCGAGCTGCCGCCGACCGCATGAACGGCAGGGGCGGCG
GGCGAGACGACGTGCAGGGCATGGGCATGGGC
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